Wall clock time and date at job start Tue Mar 31 2020 06:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47325 * 2 1 4 4 H 1.09001 * 109.46979 * 305.00169 * 3 2 1 5 5 C 1.50700 * 109.47132 * 185.00349 * 3 2 1 6 6 H 1.07995 * 119.99741 * 239.99774 * 5 3 2 7 7 C 1.37875 * 119.99973 * 59.99939 * 5 3 2 8 8 N 1.31512 * 120.00332 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99735 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46950 * 60.00390 * 9 7 5 11 11 H 1.48504 * 109.47038 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47332 * 299.99972 * 9 7 5 13 13 N 1.46499 * 109.47288 * 64.99970 * 3 2 1 14 14 C 1.34777 * 120.00199 * 275.00460 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 H 1.09000 * 110.66783 * 57.93903 * 16 14 13 18 18 C 1.54700 * 110.74761 * 294.72124 * 16 14 13 19 19 C 1.51648 * 101.93335 * 266.97268 * 18 16 14 20 20 C 1.37753 * 132.14533 * 164.57921 * 19 18 16 21 21 C 1.38530 * 119.96346 * 180.37812 * 20 19 18 22 22 F 1.35099 * 120.14690 * 180.02562 * 21 20 19 23 23 C 1.38478 * 119.70981 * 359.97438 * 21 20 19 24 24 C 1.37931 * 120.32470 * 359.83334 * 23 21 20 25 25 C 1.38863 * 107.04511 * 344.60922 * 19 18 16 26 26 O 1.36185 * 111.22573 * 358.93078 * 25 19 18 27 27 H 1.09001 * 109.46737 * 299.99859 * 1 2 3 28 28 H 1.08994 * 109.47050 * 59.99696 * 1 2 3 29 29 H 1.08998 * 109.47298 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46737 * 240.00141 * 2 1 3 31 31 H 1.08994 * 109.47050 * 120.00304 * 2 1 3 32 32 H 0.97002 * 120.00028 * 180.02562 * 8 7 5 33 33 H 0.97000 * 119.99484 * 94.99557 * 13 3 2 34 34 H 1.09003 * 110.93731 * 25.12854 * 18 16 14 35 35 H 1.09004 * 110.94021 * 148.77509 * 18 16 14 36 36 H 1.08003 * 120.01602 * 0.34774 * 20 19 18 37 37 H 1.08007 * 119.83545 * 179.81122 * 23 21 20 38 38 H 1.08003 * 119.86381 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1433 0.8783 -1.2281 8 7 3.4062 0.3374 -2.1734 9 14 6.0049 0.8811 -1.3820 10 1 6.5975 0.1471 -0.2351 11 1 6.3978 0.2165 -2.6506 12 1 6.4995 2.2813 -1.3823 13 7 1.6526 2.0975 1.2518 14 6 0.4353 2.6644 1.3670 15 8 -0.3392 2.6326 0.4341 16 6 0.0390 3.3436 2.6526 17 1 0.7399 4.1414 2.8981 18 6 -0.0520 2.3191 3.8082 19 6 -1.5192 1.9372 3.7739 20 6 -2.2149 0.8894 4.3357 21 6 -3.5805 0.7773 4.1317 22 9 -4.2667 -0.2486 4.6814 23 6 -4.2395 1.7219 3.3629 24 6 -3.5435 2.7732 2.8037 25 6 -2.1709 2.8937 3.0066 26 8 -1.3044 3.8487 2.5687 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8292 -0.0611 -2.9500 33 1 2.2721 2.1230 1.9977 34 1 0.5806 1.4534 3.6119 35 1 0.2085 2.7817 4.7603 36 1 -1.6959 0.1555 4.9344 37 1 -5.3037 1.6347 3.2001 38 1 -4.0650 3.5059 2.2056 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183941207.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:35 Heat of formation + Delta-G solvation = -108.383035 kcal Electronic energy + Delta-G solvation = -23689.853074 eV Core-core repulsion = 20025.392394 eV Total energy + Delta-G solvation = -3664.460680 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.86758 -42.53970 -40.26612 -38.19501 -36.84142 -34.54564 -33.80690 -32.80848 -30.81445 -30.53351 -28.81820 -25.84052 -24.78953 -23.60282 -22.90080 -22.14143 -21.18015 -19.47866 -18.49397 -18.37585 -17.89129 -17.79043 -17.06789 -16.65246 -16.38388 -16.19737 -15.81034 -15.34884 -15.20326 -14.62043 -14.44957 -14.29381 -14.01393 -13.86860 -13.84367 -13.55018 -13.33510 -13.17668 -12.92248 -12.70010 -12.63087 -12.41671 -12.17116 -12.08093 -11.84697 -11.60216 -11.07076 -10.66878 -10.50432 -10.07654 -9.67739 -9.09324 -8.15016 -6.32820 0.05267 0.12859 1.46888 1.48316 1.55941 1.67260 1.97639 2.36982 2.51883 2.59211 3.06007 3.14722 3.36104 3.52209 3.80427 3.85042 4.05934 4.14036 4.23252 4.45594 4.48668 4.53151 4.65437 4.69341 4.74285 4.85263 5.03037 5.03816 5.08150 5.22366 5.23550 5.40759 5.49662 5.53813 5.60743 5.77613 5.90638 6.02952 6.16059 6.75098 6.92620 7.33849 7.53310 8.90026 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.026554 B = 0.003961 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.204964 B = 7067.019258 C = 7378.402349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.005 1.005 5 C -0.547 4.547 6 H 0.077 0.923 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.263 1.263 11 H -0.290 1.290 12 H -0.271 1.271 13 N -0.695 5.695 14 C 0.479 3.521 15 O -0.577 6.577 16 C 0.065 3.935 17 H 0.179 0.821 18 C -0.090 4.090 19 C -0.153 4.153 20 C -0.105 4.105 21 C 0.054 3.946 22 F -0.142 7.142 23 C -0.115 4.115 24 C -0.117 4.117 25 C 0.079 3.921 26 O -0.290 6.290 27 H 0.042 0.958 28 H 0.021 0.979 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.408 0.592 34 H 0.107 0.893 35 H 0.146 0.854 36 H 0.158 0.842 37 H 0.168 0.832 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.108 3.024 16.284 18.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.013 0.987 5 C -0.585 4.585 6 H 0.095 0.905 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.187 1.187 11 H -0.216 1.216 12 H -0.196 1.196 13 N -0.346 5.346 14 C 0.265 3.735 15 O -0.457 6.457 16 C 0.006 3.994 17 H 0.196 0.804 18 C -0.127 4.127 19 C -0.154 4.154 20 C -0.124 4.124 21 C 0.035 3.965 22 F -0.121 7.121 23 C -0.133 4.133 24 C -0.136 4.136 25 C 0.033 3.967 26 O -0.203 6.203 27 H 0.061 0.939 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.244 0.756 34 H 0.125 0.875 35 H 0.164 0.836 36 H 0.175 0.825 37 H 0.185 0.815 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.699 3.097 15.373 17.933 hybrid contribution 0.952 -0.353 -0.462 1.115 sum -7.747 2.744 14.911 17.026 Atomic orbital electron populations 1.21659 0.97381 0.98867 0.99977 1.21773 0.93245 0.99293 1.01470 1.18355 0.93722 0.89015 0.81258 0.98706 1.21554 0.91232 1.38955 1.06794 0.90525 1.25768 1.03231 0.94397 0.95048 1.70049 1.37175 1.38353 1.09884 0.85436 0.79178 0.78448 0.77499 1.18743 1.21579 1.19620 1.46154 1.15048 1.55587 1.17765 1.21451 0.82465 0.79254 0.90339 1.90701 1.52520 1.60458 1.42048 1.23627 0.84347 0.99479 0.91969 0.80436 1.21919 0.92001 0.99313 0.99436 1.20777 0.97224 0.96947 1.00451 1.20392 0.92219 0.98444 1.01311 1.17545 0.90319 0.88239 1.00388 1.91481 1.79488 1.57073 1.84032 1.21078 1.02065 0.92987 0.97178 1.20344 0.90625 1.00246 1.02388 1.19966 0.92633 0.89687 0.94387 1.86909 1.15765 1.35252 1.82350 0.93912 0.96023 0.93900 0.91115 0.93627 0.92679 0.75641 0.87466 0.83644 0.82471 0.81485 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.52 71.98 0.61 -4.89 16 2 C -0.12 -5.71 5.45 30.59 0.17 -5.55 16 3 C 0.28 13.80 2.24 44.24 0.10 13.90 16 4 H 0.00 -0.30 7.58 -2.39 -0.02 -0.32 16 5 C -0.55 -27.67 8.73 25.60 0.22 -27.45 16 6 H 0.08 3.54 7.74 -2.91 -0.02 3.52 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.92 -51.67 11.29 21.45 0.24 -51.43 16 9 Si 0.97 40.80 29.54 68.60 2.03 42.83 16 10 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 11 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 13 N -0.69 -26.22 4.87 -446.10 -2.17 -28.39 16 14 C 0.48 17.89 5.63 87.66 0.49 18.38 16 15 O -0.58 -27.61 13.67 15.18 0.21 -27.41 16 16 C 0.07 1.68 4.11 30.43 0.13 1.81 16 17 H 0.18 3.14 8.14 -2.39 -0.02 3.12 16 18 C -0.09 -1.75 6.64 30.73 0.20 -1.54 16 19 C -0.15 -3.76 6.26 -19.53 -0.12 -3.88 16 20 C -0.11 -2.38 10.01 22.22 0.22 -2.16 16 21 C 0.05 1.28 7.31 22.40 0.16 1.44 16 22 F -0.14 -3.36 17.27 44.97 0.78 -2.58 16 23 C -0.11 -2.51 10.00 22.25 0.22 -2.29 16 24 C -0.12 -2.95 10.06 22.45 0.23 -2.72 16 25 C 0.08 2.24 6.90 22.67 0.16 2.40 16 26 O -0.29 -8.87 10.41 -77.44 -0.81 -9.67 16 27 H 0.04 1.86 5.65 -2.39 -0.01 1.85 16 28 H 0.02 1.06 7.85 -2.39 -0.02 1.04 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 3.85 5.95 -2.39 -0.01 3.84 16 31 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 33 H 0.41 12.14 8.54 -92.71 -0.79 11.35 16 34 H 0.11 2.04 7.79 -2.39 -0.02 2.02 16 35 H 0.15 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 37 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 38 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -69.60 321.67 3.82 -65.78 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.30 Total: 22.15 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 3.24 Total: -11.28 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -1.93 Total: -79.82 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.60 Total: -37.08 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.78 Total: -2.58 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -69.60 3.82 -65.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183941207.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.604 kcal (2) G-P(sol) polarization free energy of solvation -69.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds