Wall clock time and date at job start Tue Mar 31 2020 06:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47195 * 2 1 4 4 H 1.08996 * 109.46639 * 54.31562 * 3 2 1 5 5 C 1.50696 * 109.46863 * 174.31293 * 3 2 1 6 6 H 1.07999 * 120.00133 * 25.65803 * 5 3 2 7 7 C 1.37880 * 120.00054 * 205.65721 * 5 3 2 8 8 N 1.31507 * 119.99545 * 353.55650 * 7 5 3 9 9 Si 1.86803 * 120.00099 * 173.27949 * 7 5 3 10 10 H 1.48501 * 109.46894 * 89.99837 * 9 7 5 11 11 H 1.48494 * 109.47032 * 210.00211 * 9 7 5 12 12 H 1.48503 * 109.46913 * 330.00307 * 9 7 5 13 13 N 1.46497 * 109.46926 * 294.31409 * 3 2 1 14 14 C 1.34771 * 120.00031 * 85.00111 * 13 3 2 15 15 O 1.21275 * 120.00190 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00031 * 179.97438 * 14 13 3 17 17 H 1.09008 * 110.66632 * 304.29735 * 16 14 13 18 18 C 1.54702 * 110.74880 * 67.51022 * 16 14 13 19 19 C 1.52151 * 101.68112 * 93.02165 * 18 16 14 20 20 C 1.37755 * 132.10241 * 195.84667 * 19 18 16 21 21 C 1.38543 * 119.95192 * 179.55015 * 20 19 18 22 22 F 1.35097 * 120.14167 * 180.02562 * 21 20 19 23 23 C 1.38470 * 119.71107 * 359.97438 * 21 20 19 24 24 C 1.37930 * 120.32868 * 0.15205 * 23 21 20 25 25 C 1.38855 * 107.07548 * 15.70538 * 19 18 16 26 26 O 1.36188 * 111.24356 * 0.61434 * 25 19 18 27 27 H 1.09003 * 109.47033 * 60.00083 * 1 2 3 28 28 H 1.08995 * 109.47502 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47375 * 300.00380 * 1 2 3 30 30 H 1.08996 * 109.46877 * 239.99791 * 2 1 3 31 31 H 1.08996 * 109.46693 * 120.00494 * 2 1 3 32 32 H 0.97000 * 120.00553 * 354.38273 * 8 7 5 33 33 H 0.97003 * 119.99433 * 264.99951 * 13 3 2 34 34 H 1.08995 * 110.94449 * 211.11364 * 18 16 14 35 35 H 1.09001 * 110.94473 * 334.81270 * 18 16 14 36 36 H 1.07993 * 120.02266 * 359.52455 * 20 19 18 37 37 H 1.07999 * 119.83468 * 180.16738 * 23 21 20 38 38 H 1.07999 * 119.86680 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5960 1.9848 0.8347 5 6 3.5404 1.4447 0.1408 6 1 4.1146 0.5896 -0.1839 7 6 4.1802 2.5386 0.6841 8 7 3.4983 3.6281 0.9621 9 14 6.0142 2.4702 1.0325 10 1 6.7627 2.9376 -0.1619 11 1 6.3313 3.3456 2.1893 12 1 6.4065 1.0728 1.3469 13 7 1.6666 2.0924 -1.2587 14 6 0.4508 2.6588 -1.3898 15 8 -0.3344 2.6301 -0.4660 16 6 0.0669 3.3279 -2.6844 17 1 0.7923 4.0971 -2.9499 18 6 -0.0682 2.2866 -3.8205 19 6 -1.5528 1.9583 -3.7625 20 6 -2.2908 0.9219 -4.2906 21 6 -3.6573 0.8634 -4.0704 22 9 -4.3847 -0.1515 -4.5860 23 6 -4.2742 1.8492 -3.3187 24 6 -3.5355 2.8883 -2.7922 25 6 -2.1619 2.9557 -3.0128 26 8 -1.2560 3.8840 -2.5977 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8899 32 1 2.5636 3.6927 0.7108 33 1 2.2946 2.1151 -1.9977 34 1 0.1978 2.7234 -4.7831 35 1 0.5372 1.4040 -3.6141 36 1 -1.8045 0.1557 -4.8761 37 1 -5.3389 1.8042 -3.1435 38 1 -4.0241 3.6529 -2.2067 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183941225.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:39 Heat of formation + Delta-G solvation = -98.949460 kcal Electronic energy + Delta-G solvation = -23832.630498 eV Core-core repulsion = 20168.578889 eV Total energy + Delta-G solvation = -3664.051609 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.89947 -41.38684 -38.74821 -37.10418 -35.13331 -33.06465 -32.25236 -31.52785 -29.76953 -29.34659 -26.71868 -24.48299 -23.07106 -22.54727 -21.93128 -20.64848 -19.60104 -18.00170 -17.48174 -17.30059 -16.74546 -16.66964 -15.63540 -15.18564 -15.01593 -14.58774 -14.30798 -13.99014 -13.87254 -13.44895 -13.19935 -13.06439 -13.01921 -12.78715 -12.59451 -12.32321 -12.26306 -11.57888 -11.31540 -11.08937 -10.90188 -10.87224 -10.79044 -10.42177 -10.22727 -9.89383 -9.25565 -9.12717 -8.80266 -8.70228 -8.01307 -7.86712 -6.61016 -4.43154 1.02475 1.10788 2.99189 3.27778 3.30240 3.34889 3.51109 3.53454 3.92749 4.02957 4.34799 4.38851 4.50843 4.72773 4.94570 5.03995 5.10167 5.20095 5.39943 5.45316 5.58792 5.65245 5.75564 5.95770 5.96504 6.00560 6.03732 6.20426 6.22405 6.48259 6.62620 6.78294 6.88977 7.00680 7.06368 7.23977 7.56280 7.81150 8.19749 8.50051 8.66876 9.05173 9.37170 10.75690 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.027640 B = 0.004132 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.778894 B = 6774.187580 C = 7107.051150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C 0.243 3.757 4 H 0.054 0.946 5 C -0.609 4.609 6 H 0.057 0.943 7 C 0.031 3.969 8 N -0.887 5.887 9 Si 1.071 2.929 10 H -0.286 1.286 11 H -0.282 1.282 12 H -0.286 1.286 13 N -0.697 5.697 14 C 0.481 3.519 15 O -0.536 6.536 16 C 0.056 3.944 17 H 0.138 0.862 18 C -0.097 4.097 19 C -0.147 4.147 20 C -0.101 4.101 21 C 0.061 3.939 22 F -0.141 7.141 23 C -0.117 4.117 24 C -0.109 4.109 25 C 0.116 3.884 26 O -0.272 6.272 27 H 0.049 0.951 28 H 0.029 0.971 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.278 0.722 33 H 0.386 0.614 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.954 -2.812 -11.825 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C 0.144 3.856 4 H 0.072 0.928 5 C -0.647 4.647 6 H 0.075 0.925 7 C -0.178 4.178 8 N -0.520 5.520 9 Si 0.898 3.102 10 H -0.213 1.213 11 H -0.207 1.207 12 H -0.212 1.212 13 N -0.348 5.348 14 C 0.264 3.736 15 O -0.415 6.415 16 C -0.004 4.004 17 H 0.155 0.845 18 C -0.135 4.135 19 C -0.148 4.148 20 C -0.120 4.120 21 C 0.042 3.958 22 F -0.120 7.120 23 C -0.135 4.135 24 C -0.127 4.127 25 C 0.070 3.930 26 O -0.184 6.184 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.219 0.781 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.320 -1.793 -10.386 13.428 hybrid contribution -0.959 -1.086 -1.218 1.893 sum -9.279 -2.879 -11.605 15.135 Atomic orbital electron populations 1.21852 0.97051 0.98698 1.02269 1.21818 0.94129 0.99051 1.00549 1.18987 0.94990 0.88606 0.83022 0.92801 1.22149 0.90989 1.04957 1.46625 0.92457 1.26029 1.06720 0.92215 0.92818 1.70712 1.11892 1.27661 1.41743 0.83527 0.73796 0.75801 0.77084 1.21300 1.20731 1.21176 1.47732 1.13150 1.55234 1.18701 1.20693 0.84000 0.80168 0.88734 1.90678 1.50949 1.59270 1.40566 1.23598 0.84615 0.97252 0.94889 0.84506 1.21887 0.92614 0.99851 0.99114 1.20632 0.96107 0.96954 1.01118 1.20140 0.91804 0.98624 1.01406 1.17320 0.89304 0.88207 1.01003 1.91478 1.77261 1.57910 1.85347 1.20793 1.00798 0.93601 0.98357 1.20064 0.90401 0.99928 1.02342 1.19588 0.91486 0.88986 0.92974 1.86936 1.14683 1.34376 1.82387 0.93212 0.95232 0.92952 0.93667 0.92232 0.91042 0.78051 0.87926 0.88041 0.84574 0.84019 0.84331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.53 37.16 0.32 -2.54 16 2 C -0.12 -2.46 5.58 -26.73 -0.15 -2.61 16 3 C 0.24 5.76 1.72 -69.09 -0.12 5.64 16 4 H 0.05 1.50 6.56 -51.93 -0.34 1.16 16 5 C -0.61 -15.43 8.49 -34.44 -0.29 -15.72 16 6 H 0.06 1.43 7.82 -52.49 -0.41 1.02 16 7 C 0.03 0.83 5.45 -17.82 -0.10 0.73 16 8 N -0.89 -25.24 13.56 55.43 0.75 -24.49 16 9 Si 1.07 23.13 29.91 -169.99 -5.08 18.05 16 10 H -0.29 -5.92 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.29 -5.92 7.11 56.52 0.40 -5.51 16 13 N -0.70 -14.16 4.91 -54.94 -0.27 -14.43 16 14 C 0.48 9.61 5.65 -10.99 -0.06 9.55 16 15 O -0.54 -12.78 13.63 -13.50 -0.18 -12.97 16 16 C 0.06 0.88 4.10 -26.99 -0.11 0.76 16 17 H 0.14 1.79 8.14 -51.92 -0.42 1.37 16 18 C -0.10 -1.20 6.68 -26.27 -0.18 -1.38 16 19 C -0.15 -2.04 6.27 -103.85 -0.65 -2.69 16 20 C -0.10 -1.28 10.02 -39.65 -0.40 -1.68 16 21 C 0.06 0.78 7.31 -39.38 -0.29 0.49 16 22 F -0.14 -1.80 17.27 2.25 0.04 -1.76 16 23 C -0.12 -1.39 10.00 -39.61 -0.40 -1.79 16 24 C -0.11 -1.46 10.06 -39.31 -0.40 -1.85 16 25 C 0.12 1.79 6.88 -38.97 -0.27 1.52 16 26 O -0.27 -4.63 10.42 -39.41 -0.41 -5.04 16 27 H 0.05 1.03 5.63 -51.93 -0.29 0.74 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.14 7.89 -51.93 -0.41 0.73 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.28 8.11 6.93 -40.82 -0.28 7.83 16 33 H 0.39 6.99 8.59 -40.82 -0.35 6.64 16 34 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 1.22 7.85 -51.93 -0.41 0.81 16 36 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 38 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 323.91 15.07 4.88 4.88 Total: -1.00 -30.80 323.91 -8.03 -38.83 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -4.67 Total: 8.48 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -3.08 Total: -11.55 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.48 Total: -38.92 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.59 Total: -18.01 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.08 Total: 18.05 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.80 -8.03 -38.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183941225.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.115 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds