Wall clock time and date at job start Tue Mar 31 2020 06:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47195 * 2 1 4 4 H 1.08996 * 109.46639 * 54.31562 * 3 2 1 5 5 C 1.50696 * 109.46863 * 174.31293 * 3 2 1 6 6 H 1.07999 * 120.00133 * 25.65803 * 5 3 2 7 7 C 1.37880 * 120.00054 * 205.65721 * 5 3 2 8 8 N 1.31507 * 119.99545 * 353.55650 * 7 5 3 9 9 Si 1.86803 * 120.00099 * 173.27949 * 7 5 3 10 10 H 1.48501 * 109.46894 * 89.99837 * 9 7 5 11 11 H 1.48494 * 109.47032 * 210.00211 * 9 7 5 12 12 H 1.48503 * 109.46913 * 330.00307 * 9 7 5 13 13 N 1.46497 * 109.46926 * 294.31409 * 3 2 1 14 14 C 1.34771 * 120.00031 * 85.00111 * 13 3 2 15 15 O 1.21275 * 120.00190 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00031 * 179.97438 * 14 13 3 17 17 H 1.09008 * 110.66632 * 304.29735 * 16 14 13 18 18 C 1.54702 * 110.74880 * 67.51022 * 16 14 13 19 19 C 1.52151 * 101.68112 * 93.02165 * 18 16 14 20 20 C 1.37755 * 132.10241 * 195.84667 * 19 18 16 21 21 C 1.38543 * 119.95192 * 179.55015 * 20 19 18 22 22 F 1.35097 * 120.14167 * 180.02562 * 21 20 19 23 23 C 1.38470 * 119.71107 * 359.97438 * 21 20 19 24 24 C 1.37930 * 120.32868 * 0.15205 * 23 21 20 25 25 C 1.38855 * 107.07548 * 15.70538 * 19 18 16 26 26 O 1.36188 * 111.24356 * 0.61434 * 25 19 18 27 27 H 1.09003 * 109.47033 * 60.00083 * 1 2 3 28 28 H 1.08995 * 109.47502 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47375 * 300.00380 * 1 2 3 30 30 H 1.08996 * 109.46877 * 239.99791 * 2 1 3 31 31 H 1.08996 * 109.46693 * 120.00494 * 2 1 3 32 32 H 0.97000 * 120.00553 * 354.38273 * 8 7 5 33 33 H 0.97003 * 119.99433 * 264.99951 * 13 3 2 34 34 H 1.08995 * 110.94449 * 211.11364 * 18 16 14 35 35 H 1.09001 * 110.94473 * 334.81270 * 18 16 14 36 36 H 1.07993 * 120.02266 * 359.52455 * 20 19 18 37 37 H 1.07999 * 119.83468 * 180.16738 * 23 21 20 38 38 H 1.07999 * 119.86680 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5960 1.9848 0.8347 5 6 3.5404 1.4447 0.1408 6 1 4.1146 0.5896 -0.1839 7 6 4.1802 2.5386 0.6841 8 7 3.4983 3.6281 0.9621 9 14 6.0142 2.4702 1.0325 10 1 6.7627 2.9376 -0.1619 11 1 6.3313 3.3456 2.1893 12 1 6.4065 1.0728 1.3469 13 7 1.6666 2.0924 -1.2587 14 6 0.4508 2.6588 -1.3898 15 8 -0.3344 2.6301 -0.4660 16 6 0.0669 3.3279 -2.6844 17 1 0.7923 4.0971 -2.9499 18 6 -0.0682 2.2866 -3.8205 19 6 -1.5528 1.9583 -3.7625 20 6 -2.2908 0.9219 -4.2906 21 6 -3.6573 0.8634 -4.0704 22 9 -4.3847 -0.1515 -4.5860 23 6 -4.2742 1.8492 -3.3187 24 6 -3.5355 2.8883 -2.7922 25 6 -2.1619 2.9557 -3.0128 26 8 -1.2560 3.8840 -2.5977 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8899 32 1 2.5636 3.6927 0.7108 33 1 2.2946 2.1151 -1.9977 34 1 0.1978 2.7234 -4.7831 35 1 0.5372 1.4040 -3.6141 36 1 -1.8045 0.1557 -4.8761 37 1 -5.3389 1.8042 -3.1435 38 1 -4.0241 3.6529 -2.2067 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183941225.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:38 Heat of formation + Delta-G solvation = -117.364995 kcal Electronic energy + Delta-G solvation = -23833.429056 eV Core-core repulsion = 20168.578889 eV Total energy + Delta-G solvation = -3664.850167 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.89336 -42.56184 -40.30659 -38.24855 -36.93174 -34.42364 -34.00665 -33.04770 -30.82588 -30.52090 -28.53281 -25.79500 -24.85989 -23.64130 -22.94739 -22.24795 -21.27157 -19.64634 -18.63558 -18.46654 -18.23313 -17.81940 -16.77918 -16.65666 -16.44850 -15.98580 -15.62940 -15.49003 -15.25877 -14.92728 -14.55075 -14.41946 -14.23838 -14.06594 -13.90673 -13.81250 -13.45094 -12.90915 -12.79868 -12.59252 -12.55838 -12.42794 -12.16090 -11.92270 -11.88687 -11.66372 -10.94667 -10.71889 -10.54881 -10.11762 -9.62990 -9.12975 -8.68825 -6.51244 0.01828 0.09205 1.57772 1.61056 1.66613 1.83096 1.97877 2.44724 2.50421 2.56529 3.00369 3.21456 3.31621 3.48200 3.75715 3.86000 4.02069 4.08206 4.18376 4.23911 4.30487 4.43766 4.50150 4.59352 4.65538 4.78865 4.87329 4.99389 5.02879 5.04298 5.13785 5.20645 5.24907 5.45192 5.47043 5.74274 5.95743 6.00184 6.14233 6.45845 6.92661 7.37672 7.46612 8.66683 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.027640 B = 0.004132 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.778894 B = 6774.187580 C = 7107.051150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.111 4.111 3 C 0.248 3.752 4 H 0.002 0.998 5 C -0.612 4.612 6 H 0.064 0.936 7 C -0.015 4.015 8 N -0.921 5.921 9 Si 1.119 2.881 10 H -0.267 1.267 11 H -0.292 1.292 12 H -0.269 1.269 13 N -0.692 5.692 14 C 0.477 3.523 15 O -0.581 6.581 16 C 0.059 3.941 17 H 0.162 0.838 18 C -0.085 4.085 19 C -0.153 4.153 20 C -0.103 4.103 21 C 0.056 3.944 22 F -0.140 7.140 23 C -0.112 4.112 24 C -0.118 4.118 25 C 0.079 3.921 26 O -0.294 6.294 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.025 0.975 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.259 0.741 33 H 0.400 0.600 34 H 0.141 0.859 35 H 0.108 0.892 36 H 0.159 0.841 37 H 0.169 0.831 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.479 -4.185 -13.969 16.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.149 4.149 3 C 0.147 3.853 4 H 0.020 0.980 5 C -0.651 4.651 6 H 0.082 0.918 7 C -0.217 4.217 8 N -0.556 5.556 9 Si 0.940 3.060 10 H -0.193 1.193 11 H -0.218 1.218 12 H -0.193 1.193 13 N -0.343 5.343 14 C 0.263 3.737 15 O -0.462 6.462 16 C 0.000 4.000 17 H 0.179 0.821 18 C -0.122 4.122 19 C -0.154 4.154 20 C -0.121 4.121 21 C 0.037 3.963 22 F -0.119 7.119 23 C -0.131 4.131 24 C -0.137 4.137 25 C 0.033 3.967 26 O -0.206 6.206 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.235 0.765 34 H 0.159 0.841 35 H 0.126 0.874 36 H 0.177 0.823 37 H 0.187 0.813 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.851 -3.186 -12.579 15.166 hybrid contribution -1.244 -0.715 -0.552 1.538 sum -9.095 -3.901 -13.131 16.443 Atomic orbital electron populations 1.21697 0.96342 0.99898 1.00649 1.21733 0.94648 0.97279 1.01269 1.18692 0.94152 0.89653 0.82837 0.97964 1.22407 0.91777 1.04811 1.46067 0.91756 1.27389 1.10305 0.91746 0.92297 1.70851 1.11070 1.29262 1.44410 0.82915 0.69373 0.76487 0.77215 1.19255 1.21791 1.19346 1.47177 1.13938 1.55313 1.17918 1.21448 0.82977 0.79270 0.90048 1.90654 1.52125 1.60740 1.42705 1.23623 0.84858 0.98594 0.92961 0.82063 1.21948 0.91795 0.99159 0.99324 1.20837 0.96888 0.96763 1.00892 1.20383 0.91840 0.98670 1.01242 1.17504 0.89610 0.88270 1.00924 1.91484 1.77249 1.57865 1.85316 1.21073 1.02077 0.92610 0.97326 1.20342 0.90115 1.00675 1.02525 1.19994 0.92220 0.89877 0.94576 1.86907 1.15364 1.35334 1.83037 0.93858 0.92406 0.95595 0.91650 0.92592 0.93045 0.76472 0.84107 0.87405 0.82312 0.81322 0.83467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 8.53 71.98 0.61 -4.54 16 2 C -0.11 -4.59 5.58 30.60 0.17 -4.42 16 3 C 0.25 11.94 1.72 44.24 0.08 12.02 16 4 H 0.00 0.14 6.56 -2.39 -0.02 0.12 16 5 C -0.61 -30.96 8.49 25.60 0.22 -30.74 16 6 H 0.06 3.12 7.82 -2.91 -0.02 3.10 16 7 C -0.02 -0.81 5.45 84.66 0.46 -0.35 16 8 N -0.92 -53.90 13.56 21.45 0.29 -53.61 16 9 Si 1.12 46.02 29.91 68.60 2.05 48.07 16 10 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 11 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 13 N -0.69 -28.14 4.91 -446.12 -2.19 -30.33 16 14 C 0.48 19.26 5.65 87.66 0.50 19.76 16 15 O -0.58 -28.78 13.63 15.22 0.21 -28.57 16 16 C 0.06 1.78 4.10 30.43 0.12 1.90 16 17 H 0.16 3.97 8.14 -2.38 -0.02 3.95 16 18 C -0.09 -1.89 6.68 30.89 0.21 -1.68 16 19 C -0.15 -3.96 6.27 -19.36 -0.12 -4.08 16 20 C -0.10 -2.36 10.02 22.23 0.22 -2.13 16 21 C 0.06 1.32 7.31 22.40 0.16 1.48 16 22 F -0.14 -3.26 17.27 44.97 0.78 -2.48 16 23 C -0.11 -2.49 10.00 22.25 0.22 -2.27 16 24 C -0.12 -3.08 10.06 22.45 0.23 -2.86 16 25 C 0.08 2.38 6.88 22.67 0.16 2.54 16 26 O -0.29 -9.98 10.42 -77.47 -0.81 -10.79 16 27 H 0.04 1.77 5.63 -2.39 -0.01 1.76 16 28 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.02 1.14 7.89 -2.39 -0.02 1.12 16 30 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.26 15.86 6.93 -92.71 -0.64 15.22 16 33 H 0.40 14.08 8.59 -92.71 -0.80 13.29 16 34 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.11 2.26 7.85 -2.39 -0.02 2.24 16 36 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 37 H 0.17 2.69 8.06 -2.91 -0.02 2.66 16 38 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -69.31 323.91 3.99 -65.32 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.42 Total: 27.76 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 3.24 Total: -15.36 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -1.90 Total: -83.94 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -0.60 Total: -39.36 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.48 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.05 Total: 48.07 kcal Total: -69.31 3.99 -65.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183941225.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.048 kcal (2) G-P(sol) polarization free energy of solvation -69.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds