Wall clock time and date at job start Tue Mar 31 2020 06:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 H 1.09000 * 109.47011 * 305.00832 * 3 2 1 5 5 C 1.50701 * 109.47000 * 185.00110 * 3 2 1 6 6 H 1.08002 * 119.99761 * 239.99828 * 5 3 2 7 7 C 1.37871 * 119.99694 * 60.28391 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 N 1.46499 * 109.46437 * 65.00436 * 3 2 1 14 14 C 1.34776 * 120.00348 * 274.99648 * 13 3 2 15 15 O 1.21284 * 119.99546 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00271 * 180.02562 * 14 13 3 17 17 H 1.09000 * 110.66233 * 304.29294 * 16 14 13 18 18 C 1.54699 * 110.75240 * 67.51624 * 16 14 13 19 19 C 1.51654 * 101.93682 * 143.61849 * 18 16 14 20 20 C 1.37748 * 132.15473 * 164.58003 * 19 18 16 21 21 C 1.38531 * 119.96159 * 180.35069 * 20 19 18 22 22 F 1.35106 * 120.14388 * 180.02562 * 21 20 19 23 23 C 1.38480 * 119.71695 * 0.05256 * 21 20 19 24 24 C 1.37932 * 120.31832 * 359.78113 * 23 21 20 25 25 C 1.38862 * 107.04152 * 344.61461 * 19 18 16 26 26 O 1.36445 * 111.31930 * 359.07785 * 25 19 18 27 27 H 1.08997 * 109.47178 * 59.99345 * 1 2 3 28 28 H 1.08998 * 109.47411 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47019 * 299.99139 * 1 2 3 30 30 H 1.08999 * 109.47019 * 240.00861 * 2 1 3 31 31 H 1.08996 * 109.47643 * 120.00914 * 2 1 3 32 32 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 33 33 H 0.97000 * 119.99954 * 95.00750 * 13 3 2 34 34 H 1.09004 * 110.93673 * 261.77558 * 18 16 14 35 35 H 1.09001 * 110.93953 * 25.42288 * 18 16 14 36 36 H 1.08002 * 120.02035 * 0.36565 * 20 19 18 37 37 H 1.08003 * 119.83560 * 179.80070 * 23 21 20 38 38 H 1.08002 * 119.85841 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1429 0.8836 -1.2308 8 7 3.4058 0.3422 -2.1759 9 14 6.0043 0.8927 -1.3880 10 1 6.5981 1.5571 -0.2002 11 1 6.5007 -0.5042 -1.4742 12 1 6.3938 1.6330 -2.6150 13 7 1.6525 2.0973 1.2519 14 6 0.4352 2.6643 1.3672 15 8 -0.3392 2.6327 0.4343 16 6 0.0368 3.3383 2.6548 17 1 0.1342 2.6508 3.4950 18 6 0.8800 4.6139 2.8895 19 6 -0.1326 5.5467 3.5252 20 6 0.0075 6.7255 4.2240 21 6 -1.1132 7.3799 4.7087 22 9 -0.9800 8.5365 5.3942 23 6 -2.3705 6.8431 4.4882 24 6 -2.5110 5.6646 3.7855 25 6 -1.3891 5.0035 3.2918 26 8 -1.3041 3.8498 2.5682 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 3.8287 -0.0519 -2.9548 33 1 2.2720 2.1230 1.9978 34 1 1.7070 4.4141 3.5709 35 1 1.2447 5.0189 1.9455 36 1 0.9905 7.1395 4.3937 37 1 -3.2453 7.3500 4.8680 38 1 -3.4952 5.2524 3.6182 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183941245.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:44 Heat of formation + Delta-G solvation = -90.183056 kcal Electronic energy + Delta-G solvation = -23058.017489 eV Core-core repulsion = 19394.346020 eV Total energy + Delta-G solvation = -3663.671469 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.01648 -41.39325 -38.93969 -37.20546 -35.08223 -33.18536 -32.35988 -31.13370 -29.88059 -29.48648 -27.02831 -24.64729 -23.02607 -22.54378 -22.02640 -20.52277 -19.47305 -17.80507 -17.69998 -17.31372 -17.21390 -16.03359 -15.70761 -15.44769 -15.20981 -14.65279 -14.43053 -14.30457 -13.80784 -13.59776 -13.18701 -13.10870 -12.88495 -12.75321 -12.65196 -12.17483 -11.90251 -11.50288 -11.31551 -11.19145 -11.01396 -10.93045 -10.86144 -10.36348 -10.25883 -9.68884 -9.29041 -9.15280 -9.08805 -8.57455 -8.20269 -7.96294 -6.18711 -4.28822 0.88302 0.96427 2.81125 3.13183 3.19620 3.28181 3.28658 3.30172 3.77765 4.09286 4.26876 4.31840 4.41831 4.65032 4.83021 4.91564 4.98428 5.12898 5.21219 5.33004 5.52885 5.55212 5.71322 5.84581 5.89731 6.08742 6.34495 6.35850 6.40499 6.60186 6.92603 6.97981 7.13711 7.26855 7.33125 7.54547 7.64349 7.81620 8.10348 8.50498 8.68553 8.96211 9.38575 10.86651 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.025051 B = 0.003493 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.446754 B = 8013.349836 C = 8927.534475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.700 5.700 14 C 0.505 3.495 15 O -0.523 6.523 16 C 0.061 3.939 17 H 0.109 0.891 18 C -0.098 4.098 19 C -0.144 4.144 20 C -0.101 4.101 21 C 0.063 3.937 22 F -0.140 7.140 23 C -0.117 4.117 24 C -0.111 4.111 25 C 0.104 3.896 26 O -0.268 6.268 27 H 0.050 0.950 28 H 0.024 0.976 29 H 0.037 0.963 30 H 0.100 0.900 31 H 0.032 0.968 32 H 0.265 0.735 33 H 0.390 0.610 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.494 9.231 14.080 18.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.350 5.350 14 C 0.287 3.713 15 O -0.399 6.399 16 C 0.001 3.999 17 H 0.127 0.873 18 C -0.136 4.136 19 C -0.145 4.145 20 C -0.120 4.120 21 C 0.043 3.957 22 F -0.119 7.119 23 C -0.136 4.136 24 C -0.130 4.130 25 C 0.058 3.942 26 O -0.181 6.181 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.118 0.882 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.222 0.778 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.191 9.004 13.072 17.426 hybrid contribution 1.451 0.181 0.412 1.519 sum -5.739 9.185 13.484 17.295 Atomic orbital electron populations 1.21851 0.98287 0.98236 1.01238 1.21951 0.92634 0.99672 1.02448 1.18861 0.94371 0.89210 0.80517 0.93139 1.21234 0.90495 1.39397 1.06282 0.91923 1.24886 0.98680 0.94731 0.95348 1.69898 1.35135 1.37532 1.09216 0.86392 0.84720 0.77821 0.78153 1.19727 1.20842 1.20866 1.46420 1.13838 1.55765 1.18959 1.19720 0.83560 0.80137 0.87864 1.90735 1.51084 1.58586 1.39485 1.23390 0.80740 0.96589 0.99210 0.87339 1.21790 0.97377 0.91812 1.02584 1.20563 0.95010 0.97024 1.01902 1.20184 0.98694 0.94461 0.98620 1.17350 0.94091 0.84936 0.99280 1.91492 1.96722 1.46167 1.77508 1.20819 0.96462 0.96073 1.00215 1.20067 0.97601 0.95560 0.99758 1.19761 0.94409 0.87907 0.92165 1.87079 1.29983 1.35758 1.65233 0.93098 0.95669 0.94378 0.88159 0.94876 0.92519 0.77799 0.87722 0.87798 0.84340 0.83913 0.84197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.52 37.16 0.32 -2.72 16 2 C -0.13 -3.01 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.50 2.24 -69.08 -0.15 6.35 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 5 C -0.54 -13.46 8.72 -34.44 -0.30 -13.76 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 8 N -0.88 -23.98 11.30 55.43 0.63 -23.36 16 9 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 10 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.70 -13.35 5.02 -54.93 -0.28 -13.63 16 14 C 0.50 9.52 5.69 -10.99 -0.06 9.46 16 15 O -0.52 -12.15 13.71 -13.51 -0.19 -12.34 16 16 C 0.06 0.87 4.04 -26.99 -0.11 0.76 16 17 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 18 C -0.10 -1.17 6.64 -26.52 -0.18 -1.34 16 19 C -0.14 -1.74 6.27 -104.10 -0.65 -2.39 16 20 C -0.10 -1.08 10.01 -39.65 -0.40 -1.48 16 21 C 0.06 0.67 7.31 -39.38 -0.29 0.39 16 22 F -0.14 -1.55 17.27 2.25 0.04 -1.51 16 23 C -0.12 -1.13 10.00 -39.60 -0.40 -1.53 16 24 C -0.11 -1.22 10.06 -39.31 -0.40 -1.61 16 25 C 0.10 1.39 7.04 -38.97 -0.27 1.12 16 26 O -0.27 -4.32 10.41 -40.24 -0.42 -4.74 16 27 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.81 5.65 -51.93 -0.29 0.52 16 30 H 0.10 2.62 5.96 -51.93 -0.31 2.31 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.39 6.19 8.54 -40.82 -0.35 5.84 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.10 1.35 7.92 -51.93 -0.41 0.94 16 36 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.14 1.01 8.06 -52.48 -0.42 0.58 16 38 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 322.14 15.07 4.85 4.85 Total: -1.00 -30.17 322.14 -8.17 -38.35 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -4.66 Total: 5.74 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -3.13 Total: -8.28 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.35 Total: -36.99 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.60 Total: -17.08 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.17 -8.17 -38.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183941245.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.835 kcal (2) G-P(sol) polarization free energy of solvation -30.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds