Wall clock time and date at job start Tue Mar 31 2020 06:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 H 1.09000 * 109.47011 * 305.00832 * 3 2 1 5 5 C 1.50701 * 109.47000 * 185.00110 * 3 2 1 6 6 H 1.08002 * 119.99761 * 239.99828 * 5 3 2 7 7 C 1.37871 * 119.99694 * 60.28391 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 N 1.46499 * 109.46437 * 65.00436 * 3 2 1 14 14 C 1.34776 * 120.00348 * 274.99648 * 13 3 2 15 15 O 1.21284 * 119.99546 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00271 * 180.02562 * 14 13 3 17 17 H 1.09000 * 110.66233 * 304.29294 * 16 14 13 18 18 C 1.54699 * 110.75240 * 67.51624 * 16 14 13 19 19 C 1.51654 * 101.93682 * 143.61849 * 18 16 14 20 20 C 1.37748 * 132.15473 * 164.58003 * 19 18 16 21 21 C 1.38531 * 119.96159 * 180.35069 * 20 19 18 22 22 F 1.35106 * 120.14388 * 180.02562 * 21 20 19 23 23 C 1.38480 * 119.71695 * 0.05256 * 21 20 19 24 24 C 1.37932 * 120.31832 * 359.78113 * 23 21 20 25 25 C 1.38862 * 107.04152 * 344.61461 * 19 18 16 26 26 O 1.36445 * 111.31930 * 359.07785 * 25 19 18 27 27 H 1.08997 * 109.47178 * 59.99345 * 1 2 3 28 28 H 1.08998 * 109.47411 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47019 * 299.99139 * 1 2 3 30 30 H 1.08999 * 109.47019 * 240.00861 * 2 1 3 31 31 H 1.08996 * 109.47643 * 120.00914 * 2 1 3 32 32 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 33 33 H 0.97000 * 119.99954 * 95.00750 * 13 3 2 34 34 H 1.09004 * 110.93673 * 261.77558 * 18 16 14 35 35 H 1.09001 * 110.93953 * 25.42288 * 18 16 14 36 36 H 1.08002 * 120.02035 * 0.36565 * 20 19 18 37 37 H 1.08003 * 119.83560 * 179.80070 * 23 21 20 38 38 H 1.08002 * 119.85841 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1429 0.8836 -1.2308 8 7 3.4058 0.3422 -2.1759 9 14 6.0043 0.8927 -1.3880 10 1 6.5981 1.5571 -0.2002 11 1 6.5007 -0.5042 -1.4742 12 1 6.3938 1.6330 -2.6150 13 7 1.6525 2.0973 1.2519 14 6 0.4352 2.6643 1.3672 15 8 -0.3392 2.6327 0.4343 16 6 0.0368 3.3383 2.6548 17 1 0.1342 2.6508 3.4950 18 6 0.8800 4.6139 2.8895 19 6 -0.1326 5.5467 3.5252 20 6 0.0075 6.7255 4.2240 21 6 -1.1132 7.3799 4.7087 22 9 -0.9800 8.5365 5.3942 23 6 -2.3705 6.8431 4.4882 24 6 -2.5110 5.6646 3.7855 25 6 -1.3891 5.0035 3.2918 26 8 -1.3041 3.8498 2.5682 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 3.8287 -0.0519 -2.9548 33 1 2.2720 2.1230 1.9978 34 1 1.7070 4.4141 3.5709 35 1 1.2447 5.0189 1.9455 36 1 0.9905 7.1395 4.3937 37 1 -3.2453 7.3500 4.8680 38 1 -3.4952 5.2524 3.6182 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183941245.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:43 Heat of formation + Delta-G solvation = -108.140273 kcal Electronic energy + Delta-G solvation = -23058.796173 eV Core-core repulsion = 19394.346020 eV Total energy + Delta-G solvation = -3664.450153 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.85482 -42.43546 -40.43699 -38.21233 -36.87672 -34.53377 -33.86993 -32.80431 -30.81817 -30.59662 -28.83230 -25.88193 -24.76125 -23.49115 -22.91287 -22.13532 -21.20353 -19.26990 -18.73776 -18.26175 -18.16947 -17.64301 -17.17800 -16.60563 -16.48367 -16.21042 -15.77233 -15.28784 -15.22729 -14.59649 -14.47732 -14.22317 -14.17680 -13.97920 -13.78959 -13.59055 -13.41805 -13.17726 -12.90708 -12.86670 -12.70378 -12.16403 -12.08296 -12.05114 -11.81215 -11.58770 -11.04477 -10.70588 -10.52097 -10.10298 -9.70502 -9.13355 -8.15323 -6.32625 0.03670 0.11833 1.45838 1.47497 1.58462 1.59614 1.77900 2.37908 2.43293 2.67984 3.11358 3.15236 3.29232 3.53248 3.77452 3.82948 3.97838 4.06441 4.22780 4.41021 4.48676 4.56318 4.64223 4.68785 4.75222 4.82743 5.03522 5.05510 5.07992 5.23597 5.25260 5.42329 5.50107 5.52800 5.60827 5.78490 5.89601 6.02554 6.16251 6.75119 6.89536 7.32914 7.49939 8.90335 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.025051 B = 0.003493 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.446754 B = 8013.349836 C = 8927.534475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.279 3.721 4 H -0.002 1.002 5 C -0.544 4.544 6 H 0.077 0.923 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.257 1.257 11 H -0.281 1.281 12 H -0.287 1.287 13 N -0.692 5.692 14 C 0.503 3.497 15 O -0.574 6.574 16 C 0.068 3.932 17 H 0.144 0.856 18 C -0.092 4.092 19 C -0.148 4.148 20 C -0.100 4.100 21 C 0.058 3.942 22 F -0.141 7.141 23 C -0.108 4.108 24 C -0.112 4.112 25 C 0.073 3.927 26 O -0.300 6.300 27 H 0.022 0.978 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.264 0.736 33 H 0.409 0.591 34 H 0.141 0.859 35 H 0.088 0.912 36 H 0.159 0.841 37 H 0.172 0.828 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.654 10.199 16.727 20.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.176 3.824 4 H 0.016 0.984 5 C -0.583 4.583 6 H 0.096 0.904 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.181 1.181 11 H -0.207 1.207 12 H -0.214 1.214 13 N -0.342 5.342 14 C 0.288 3.712 15 O -0.454 6.454 16 C 0.009 3.991 17 H 0.161 0.839 18 C -0.129 4.129 19 C -0.149 4.149 20 C -0.119 4.119 21 C 0.039 3.961 22 F -0.120 7.120 23 C -0.127 4.127 24 C -0.130 4.130 25 C 0.027 3.973 26 O -0.214 6.214 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.244 0.756 34 H 0.159 0.841 35 H 0.106 0.894 36 H 0.176 0.824 37 H 0.189 0.811 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.337 9.994 15.776 19.722 hybrid contribution 1.101 -0.037 -0.395 1.170 sum -5.236 9.957 15.381 19.056 Atomic orbital electron populations 1.21693 0.97236 0.99212 1.00107 1.21805 0.93470 0.99193 1.01617 1.18419 0.93853 0.89113 0.81013 0.98413 1.21599 0.91131 1.38926 1.06609 0.90443 1.25766 1.03212 0.94447 0.95098 1.70057 1.37031 1.38537 1.09810 0.85328 0.79226 0.77722 0.78233 1.18094 1.20673 1.21350 1.46089 1.14653 1.55466 1.18019 1.20514 0.82535 0.79153 0.89026 1.90713 1.52458 1.60340 1.41842 1.23351 0.81031 0.97983 0.96766 0.83919 1.21790 0.97990 0.90367 1.02720 1.20573 0.94423 0.97558 1.02340 1.20375 0.99806 0.93817 0.97878 1.17530 0.94594 0.84873 0.99129 1.91496 1.96757 1.46219 1.77512 1.21112 0.97226 0.95321 0.99019 1.20339 0.97749 0.95657 0.99300 1.20099 0.95928 0.87796 0.93429 1.87023 1.30635 1.37141 1.66590 0.95831 0.93475 0.93878 0.90978 0.93497 0.92665 0.75559 0.84056 0.89412 0.82356 0.81088 0.82802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.59 8.52 71.98 0.61 -4.98 16 2 C -0.12 -5.82 5.45 30.60 0.17 -5.66 16 3 C 0.28 13.69 2.24 44.25 0.10 13.79 16 4 H 0.00 -0.12 7.58 -2.39 -0.02 -0.14 16 5 C -0.54 -27.33 8.72 25.60 0.22 -27.11 16 6 H 0.08 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.01 0.77 5.30 84.65 0.45 1.22 16 8 N -0.92 -51.30 11.30 21.45 0.24 -51.06 16 9 Si 0.97 40.65 29.54 68.60 2.03 42.68 16 10 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 11 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 13 N -0.69 -26.20 5.02 -446.09 -2.24 -28.44 16 14 C 0.50 19.07 5.69 87.66 0.50 19.57 16 15 O -0.57 -27.79 13.71 15.19 0.21 -27.59 16 16 C 0.07 1.87 4.04 30.43 0.12 1.99 16 17 H 0.14 2.92 8.14 -2.39 -0.02 2.90 16 18 C -0.09 -2.00 6.64 30.73 0.20 -1.79 16 19 C -0.15 -3.29 6.27 -19.53 -0.12 -3.42 16 20 C -0.10 -1.89 10.01 22.22 0.22 -1.67 16 21 C 0.06 1.09 7.31 22.40 0.16 1.26 16 22 F -0.14 -2.74 17.27 44.97 0.78 -1.96 16 23 C -0.11 -1.81 10.00 22.25 0.22 -1.59 16 24 C -0.11 -2.25 10.06 22.44 0.23 -2.02 16 25 C 0.07 1.86 7.04 22.67 0.16 2.02 16 26 O -0.30 -9.58 10.41 -80.45 -0.84 -10.42 16 27 H 0.02 1.14 7.85 -2.39 -0.02 1.12 16 28 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.04 1.85 5.65 -2.39 -0.01 1.84 16 30 H 0.07 3.89 5.96 -2.39 -0.01 3.87 16 31 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 33 H 0.41 12.26 8.54 -92.71 -0.79 11.47 16 34 H 0.14 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.09 2.21 7.92 -2.39 -0.02 2.19 16 36 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -68.14 322.14 3.73 -64.42 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.30 Total: 20.75 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 3.25 Total: -8.38 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -2.00 Total: -79.49 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -0.63 Total: -38.01 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -68.14 3.73 -64.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183941245.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.724 kcal (2) G-P(sol) polarization free energy of solvation -68.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds