Wall clock time and date at job start Tue Mar 31 2020 06:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47179 * 2 1 4 4 H 1.09002 * 109.46941 * 304.99989 * 3 2 1 5 5 C 1.52995 * 109.47067 * 184.99950 * 3 2 1 6 6 S 1.81398 * 109.46696 * 65.00072 * 3 2 1 7 7 C 1.76205 * 102.99702 * 191.19159 * 6 3 2 8 8 C 1.39377 * 119.99840 * 4.78330 * 7 6 3 9 9 C 1.37718 * 119.99630 * 179.97438 * 8 7 6 10 10 C 1.39375 * 120.00216 * 359.97438 * 9 8 7 11 11 N 1.39129 * 120.00020 * 180.02562 * 10 9 8 12 12 C 1.34780 * 119.99917 * 33.04271 * 11 10 9 13 13 O 1.21842 * 120.00058 * 5.92616 * 12 11 10 14 14 C 1.41363 * 119.99870 * 185.92882 * 12 11 10 15 15 H 1.08001 * 119.99931 * 359.97438 * 14 12 11 16 16 C 1.40137 * 119.99984 * 180.02562 * 14 12 11 17 17 N 1.30633 * 119.99681 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00112 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47002 * 59.99536 * 18 16 14 20 20 H 1.48494 * 109.47272 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47049 * 300.00047 * 18 16 14 22 22 C 1.39328 * 119.99931 * 0.03767 * 10 9 8 23 23 C 1.50698 * 119.99959 * 179.97438 * 22 10 9 24 24 C 1.37759 * 120.00157 * 359.95863 * 22 10 9 25 25 H 1.09002 * 109.46879 * 60.00044 * 1 2 3 26 26 H 1.09003 * 109.47450 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47451 * 300.00268 * 1 2 3 28 28 H 1.09000 * 109.47182 * 240.00337 * 2 1 3 29 29 H 1.08998 * 109.47279 * 120.00578 * 2 1 3 30 30 H 1.09002 * 109.47408 * 66.41401 * 5 3 2 31 31 H 1.09001 * 109.47202 * 186.41827 * 5 3 2 32 32 H 1.09006 * 109.47058 * 306.41906 * 5 3 2 33 33 H 1.07996 * 119.99997 * 359.70745 * 8 7 6 34 34 H 1.07996 * 119.99543 * 179.97438 * 9 8 7 35 35 H 0.96996 * 120.00323 * 213.04583 * 11 10 9 36 36 H 0.96998 * 119.99520 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.47217 * 269.97883 * 23 22 10 38 38 H 1.09005 * 109.47368 * 29.97986 * 23 22 10 39 39 H 1.09003 * 109.47350 * 149.97995 * 23 22 10 40 40 H 1.07999 * 119.99769 * 180.02562 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1257 6 16 1.5601 2.2534 1.5500 7 6 1.9235 3.9493 1.2391 8 6 2.3580 4.3488 -0.0235 9 6 2.6415 5.6743 -0.2666 10 6 2.4934 6.6165 0.7498 11 7 2.7793 7.9557 0.5040 12 6 2.5503 8.4808 -0.7160 13 8 1.9938 7.8148 -1.5712 14 6 2.9558 9.8041 -1.0034 15 1 3.4487 10.3946 -0.2452 16 6 2.7172 10.3503 -2.2717 17 7 2.1204 9.6362 -3.1886 18 14 3.2523 12.0992 -2.6513 19 1 4.7231 12.2146 -2.4818 20 1 2.8878 12.4357 -4.0509 21 1 2.5720 13.0376 -1.7228 22 6 2.0593 6.2171 2.0120 23 6 1.8998 7.2356 3.1111 24 6 1.7757 4.8911 2.2553 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8491 1.0611 -1.1057 31 1 3.9376 2.4622 -0.0115 32 1 3.9941 0.8108 0.6506 33 1 2.4764 3.6182 -0.8099 34 1 2.9785 5.9838 -1.2449 35 1 3.1435 8.5115 1.2106 36 1 1.9556 10.0142 -4.0665 37 1 2.8360 7.3251 3.6623 38 1 1.6401 8.2011 2.6769 39 1 1.1080 6.9174 3.7893 40 1 1.4388 4.5817 3.2336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184433236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:44 Heat of formation + Delta-G solvation = -34.276890 kcal Electronic energy + Delta-G solvation = -20795.032791 eV Core-core repulsion = 17699.998771 eV Total energy + Delta-G solvation = -3095.034020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.36080 -37.05932 -35.89799 -33.68972 -32.68368 -31.87240 -30.34609 -29.18755 -26.91184 -26.05568 -23.94388 -22.71274 -21.38430 -20.91632 -19.82805 -17.62287 -16.75239 -16.57999 -15.78214 -15.61602 -14.79231 -14.23621 -14.08395 -13.99228 -13.66162 -13.43927 -13.23211 -12.98855 -12.63824 -12.51846 -12.33224 -12.18342 -11.92400 -11.71858 -11.44962 -11.41833 -11.26517 -11.13134 -11.01887 -10.82121 -10.63689 -10.61991 -10.39605 -9.78017 -9.62425 -8.98399 -8.30062 -7.94927 -7.72242 -6.55458 -6.41318 -4.95085 1.78150 1.83522 1.97125 2.72046 3.04075 3.09721 3.11506 3.94605 4.14083 4.47249 4.55916 4.67092 4.74187 4.98332 5.23875 5.28484 5.37969 5.38518 5.49772 5.58646 5.65524 5.67850 5.76642 5.80315 5.82606 5.93014 5.98144 6.05763 6.10446 6.19082 6.25106 6.33268 6.60291 6.76262 6.89683 7.08708 7.18774 7.35025 7.84013 7.99335 8.18336 8.75727 9.25100 10.34197 10.55060 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.024188 B = 0.003576 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.304008 B = 7827.023421 C = 8570.996736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.102 4.102 3 C -0.075 4.075 4 H 0.093 0.907 5 C -0.151 4.151 6 S -0.139 6.139 7 C -0.129 4.129 8 C -0.112 4.112 9 C -0.112 4.112 10 C 0.199 3.801 11 N -0.697 5.697 12 C 0.542 3.458 13 O -0.567 6.567 14 C -0.538 4.538 15 H 0.069 0.931 16 C 0.088 3.912 17 N -0.746 5.746 18 Si 0.913 3.087 19 H -0.266 1.266 20 H -0.278 1.278 21 H -0.266 1.266 22 C -0.135 4.135 23 C -0.105 4.105 24 C -0.075 4.075 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.117 0.883 34 H 0.141 0.859 35 H 0.392 0.608 36 H 0.274 0.726 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.038 -12.523 7.901 14.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.140 4.140 3 C -0.204 4.204 4 H 0.111 0.889 5 C -0.210 4.210 6 S 0.102 5.898 7 C -0.242 4.242 8 C -0.136 4.136 9 C -0.134 4.134 10 C 0.098 3.902 11 N -0.340 5.340 12 C 0.352 3.648 13 O -0.450 6.450 14 C -0.573 4.573 15 H 0.088 0.912 16 C -0.135 4.135 17 N -0.373 5.373 18 Si 0.737 3.263 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.141 4.141 23 C -0.162 4.162 24 C -0.099 4.099 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.135 0.865 34 H 0.159 0.841 35 H 0.225 0.775 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.127 -13.507 7.971 15.684 hybrid contribution 0.902 1.844 -1.032 2.298 sum 1.030 -11.663 6.939 13.611 Atomic orbital electron populations 1.21876 0.95041 1.01594 1.03052 1.21363 0.96703 0.93313 1.02658 1.23398 0.99546 0.99208 0.98269 0.88909 1.22155 0.93144 1.03477 1.02185 1.84939 1.82236 0.99831 1.22754 1.21389 1.09928 0.95717 0.97172 1.20996 1.01383 0.96376 0.94804 1.21234 1.01029 0.90833 1.00351 1.17886 0.93906 0.85826 0.92623 1.44149 1.66448 1.07223 1.16156 1.16960 0.80222 0.88337 0.79316 1.90680 1.46136 1.62876 1.45325 1.19949 1.40057 0.98448 0.98867 0.91229 1.25764 0.93001 0.99184 0.95583 1.70002 1.27816 1.36130 1.03347 0.86333 0.79878 0.82024 0.78050 1.19026 1.20320 1.19024 1.19564 1.04540 0.94498 0.95460 1.20619 1.01413 0.97965 0.96227 1.20217 1.01141 0.91219 0.97326 0.92521 0.92707 0.91356 0.90705 0.91240 0.91959 0.91360 0.91647 0.86495 0.84148 0.77457 0.91552 0.91880 0.91434 0.91945 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.74 37.16 0.36 -1.15 16 2 C -0.10 -0.97 5.40 -26.73 -0.14 -1.11 16 3 C -0.08 -0.89 2.03 -26.73 -0.05 -0.94 16 4 H 0.09 1.18 6.82 -51.92 -0.35 0.83 16 5 C -0.15 -1.67 8.69 37.15 0.32 -1.35 16 6 S -0.14 -1.95 20.11 -107.50 -2.16 -4.11 16 7 C -0.13 -2.20 6.02 -38.75 -0.23 -2.43 16 8 C -0.11 -2.07 8.08 -39.35 -0.32 -2.38 16 9 C -0.11 -2.43 8.63 -39.35 -0.34 -2.77 16 10 C 0.20 4.23 6.27 -83.72 -0.52 3.71 16 11 N -0.70 -15.61 4.75 -12.47 -0.06 -15.67 16 12 C 0.54 14.87 7.28 -15.07 -0.11 14.76 16 13 O -0.57 -17.53 12.54 5.06 0.06 -17.46 16 14 C -0.54 -14.45 9.29 -37.68 -0.35 -14.80 16 15 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 16 C 0.09 2.33 5.50 -17.35 -0.10 2.24 16 17 N -0.75 -21.27 11.72 55.55 0.65 -20.62 16 18 Si 0.91 19.11 29.56 -169.99 -5.02 14.08 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 C -0.14 -2.43 5.90 -104.39 -0.62 -3.04 16 23 C -0.11 -1.53 9.46 36.00 0.34 -1.18 16 24 C -0.08 -1.27 9.44 -39.35 -0.37 -1.64 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.73 7.13 -51.93 -0.37 0.36 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.88 6.20 -51.93 -0.32 0.56 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.12 1.94 4.95 -52.49 -0.26 1.68 16 34 H 0.14 3.45 6.40 -52.49 -0.34 3.11 16 35 H 0.39 7.55 7.71 -40.82 -0.31 7.23 16 36 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 1.03 7.14 -51.93 -0.37 0.66 16 39 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 40 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 337.36 15.07 5.08 5.08 Total: -1.00 -31.44 337.36 -9.25 -40.69 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -5.68 Total: 10.13 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -2.13 Total: -12.12 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.59 Total: -36.29 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.06 Total: -17.46 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.08 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -2.16 Total: -4.11 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.44 -9.25 -40.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184433236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.415 kcal (2) G-P(sol) polarization free energy of solvation -31.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds