Wall clock time and date at job start Tue Mar 31 2020 06:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47179 * 2 1 4 4 H 1.09002 * 109.46941 * 304.99989 * 3 2 1 5 5 C 1.52995 * 109.47067 * 184.99950 * 3 2 1 6 6 S 1.81398 * 109.46696 * 65.00072 * 3 2 1 7 7 C 1.76205 * 102.99702 * 191.19159 * 6 3 2 8 8 C 1.39377 * 119.99840 * 4.78330 * 7 6 3 9 9 C 1.37718 * 119.99630 * 179.97438 * 8 7 6 10 10 C 1.39375 * 120.00216 * 359.97438 * 9 8 7 11 11 N 1.39129 * 120.00020 * 180.02562 * 10 9 8 12 12 C 1.34780 * 119.99917 * 33.04271 * 11 10 9 13 13 O 1.21842 * 120.00058 * 5.92616 * 12 11 10 14 14 C 1.41363 * 119.99870 * 185.92882 * 12 11 10 15 15 H 1.08001 * 119.99931 * 359.97438 * 14 12 11 16 16 C 1.40137 * 119.99984 * 180.02562 * 14 12 11 17 17 N 1.30633 * 119.99681 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00112 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47002 * 59.99536 * 18 16 14 20 20 H 1.48494 * 109.47272 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47049 * 300.00047 * 18 16 14 22 22 C 1.39328 * 119.99931 * 0.03767 * 10 9 8 23 23 C 1.50698 * 119.99959 * 179.97438 * 22 10 9 24 24 C 1.37759 * 120.00157 * 359.95863 * 22 10 9 25 25 H 1.09002 * 109.46879 * 60.00044 * 1 2 3 26 26 H 1.09003 * 109.47450 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47451 * 300.00268 * 1 2 3 28 28 H 1.09000 * 109.47182 * 240.00337 * 2 1 3 29 29 H 1.08998 * 109.47279 * 120.00578 * 2 1 3 30 30 H 1.09002 * 109.47408 * 66.41401 * 5 3 2 31 31 H 1.09001 * 109.47202 * 186.41827 * 5 3 2 32 32 H 1.09006 * 109.47058 * 306.41906 * 5 3 2 33 33 H 1.07996 * 119.99997 * 359.70745 * 8 7 6 34 34 H 1.07996 * 119.99543 * 179.97438 * 9 8 7 35 35 H 0.96996 * 120.00323 * 213.04583 * 11 10 9 36 36 H 0.96998 * 119.99520 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.47217 * 269.97883 * 23 22 10 38 38 H 1.09005 * 109.47368 * 29.97986 * 23 22 10 39 39 H 1.09003 * 109.47350 * 149.97995 * 23 22 10 40 40 H 1.07999 * 119.99769 * 180.02562 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1257 6 16 1.5601 2.2534 1.5500 7 6 1.9235 3.9493 1.2391 8 6 2.3580 4.3488 -0.0235 9 6 2.6415 5.6743 -0.2666 10 6 2.4934 6.6165 0.7498 11 7 2.7793 7.9557 0.5040 12 6 2.5503 8.4808 -0.7160 13 8 1.9938 7.8148 -1.5712 14 6 2.9558 9.8041 -1.0034 15 1 3.4487 10.3946 -0.2452 16 6 2.7172 10.3503 -2.2717 17 7 2.1204 9.6362 -3.1886 18 14 3.2523 12.0992 -2.6513 19 1 4.7231 12.2146 -2.4818 20 1 2.8878 12.4357 -4.0509 21 1 2.5720 13.0376 -1.7228 22 6 2.0593 6.2171 2.0120 23 6 1.8998 7.2356 3.1111 24 6 1.7757 4.8911 2.2553 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8491 1.0611 -1.1057 31 1 3.9376 2.4622 -0.0115 32 1 3.9941 0.8108 0.6506 33 1 2.4764 3.6182 -0.8099 34 1 2.9785 5.9838 -1.2449 35 1 3.1435 8.5115 1.2106 36 1 1.9556 10.0142 -4.0665 37 1 2.8360 7.3251 3.6623 38 1 1.6401 8.2011 2.6769 39 1 1.1080 6.9174 3.7893 40 1 1.4388 4.5817 3.2336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184433236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:43 Heat of formation + Delta-G solvation = -52.189449 kcal Electronic energy + Delta-G solvation = -20795.809538 eV Core-core repulsion = 17699.998771 eV Total energy + Delta-G solvation = -3095.810767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.00734 -38.88323 -36.79302 -35.45924 -34.61135 -33.42183 -31.30653 -30.76902 -28.68288 -27.55585 -24.79740 -24.30479 -22.63852 -22.15883 -21.60001 -19.49883 -18.18215 -17.85070 -17.60950 -17.02767 -16.35758 -15.82815 -15.38857 -15.02048 -14.93523 -14.75867 -14.63187 -14.29865 -14.23850 -13.97392 -13.79472 -13.28569 -13.22810 -13.06328 -12.81884 -12.75116 -12.70746 -12.36069 -12.28227 -12.14368 -12.07785 -11.91298 -11.72417 -11.28806 -10.94343 -10.87614 -9.99763 -9.64261 -9.43266 -8.40791 -7.97929 -7.04100 0.30654 0.47046 0.66652 1.38259 1.40513 1.50889 1.53690 2.19346 2.32362 2.77445 2.99459 3.63190 3.68041 3.83316 3.88986 3.96576 4.14605 4.26853 4.42876 4.46204 4.56285 4.63750 4.68239 4.79372 4.82221 4.83659 4.95337 4.99856 5.08333 5.17240 5.18522 5.20337 5.22368 5.30736 5.37036 5.42162 5.56745 5.81838 5.86656 6.15863 6.40929 6.70792 7.37876 8.36306 8.54609 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.024188 B = 0.003576 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.304008 B = 7827.023421 C = 8570.996736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.097 4.097 3 C -0.077 4.077 4 H 0.080 0.920 5 C -0.149 4.149 6 S -0.118 6.118 7 C -0.127 4.127 8 C -0.116 4.116 9 C -0.137 4.137 10 C 0.161 3.839 11 N -0.690 5.690 12 C 0.529 3.471 13 O -0.615 6.615 14 C -0.565 4.565 15 H 0.091 0.909 16 C 0.032 3.968 17 N -0.800 5.800 18 Si 1.002 2.998 19 H -0.253 1.253 20 H -0.273 1.273 21 H -0.252 1.252 22 C -0.124 4.124 23 C -0.104 4.104 24 C -0.078 4.078 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.128 0.872 34 H 0.097 0.903 35 H 0.405 0.595 36 H 0.279 0.721 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.087 0.913 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.281 -13.179 9.910 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.136 4.136 3 C -0.206 4.206 4 H 0.099 0.901 5 C -0.207 4.207 6 S 0.124 5.876 7 C -0.240 4.240 8 C -0.139 4.139 9 C -0.160 4.160 10 C 0.060 3.940 11 N -0.334 5.334 12 C 0.338 3.662 13 O -0.503 6.503 14 C -0.600 4.600 15 H 0.109 0.891 16 C -0.187 4.187 17 N -0.428 5.428 18 Si 0.820 3.180 19 H -0.177 1.177 20 H -0.197 1.197 21 H -0.176 1.176 22 C -0.129 4.129 23 C -0.160 4.160 24 C -0.102 4.102 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.113 0.887 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.146 0.854 34 H 0.115 0.885 35 H 0.241 0.759 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.381 -14.199 10.048 17.399 hybrid contribution 0.798 1.804 -1.589 2.533 sum 1.179 -12.396 8.459 15.053 Atomic orbital electron populations 1.21882 0.95126 1.02546 1.02105 1.21393 0.96564 0.91545 1.04064 1.23575 1.00144 1.00376 0.96485 0.90142 1.22127 0.92474 1.02426 1.03696 1.84853 1.81750 0.96908 1.24064 1.21774 1.07582 0.98308 0.96368 1.21041 1.01517 0.95198 0.96162 1.21027 1.03176 0.92804 0.99017 1.18125 0.96599 0.85022 0.94222 1.43638 1.66601 1.08076 1.15053 1.17324 0.79848 0.88759 0.80227 1.90636 1.48251 1.64062 1.47324 1.20493 1.40557 0.98772 1.00150 0.89077 1.27045 0.92233 1.04515 0.94884 1.70168 1.29487 1.38965 1.04156 0.85003 0.79871 0.74988 0.78091 1.17703 1.19733 1.17580 1.19934 1.02282 0.95954 0.94741 1.20705 1.03600 0.96271 0.95461 1.20639 1.00346 0.90656 0.98548 0.93193 0.90865 0.92559 0.88729 0.90299 0.90296 0.93647 0.90342 0.85399 0.88450 0.75898 0.91074 0.89401 0.92530 0.89437 0.83285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.74 71.98 0.70 -2.01 16 2 C -0.10 -1.59 5.40 30.60 0.17 -1.42 16 3 C -0.08 -1.70 2.03 30.59 0.06 -1.64 16 4 H 0.08 2.01 6.82 -2.39 -0.02 1.99 16 5 C -0.15 -3.08 8.69 71.98 0.63 -2.45 16 6 S -0.12 -3.09 20.11 -56.49 -1.14 -4.22 16 7 C -0.13 -4.25 6.02 22.81 0.14 -4.12 16 8 C -0.12 -4.42 8.08 22.42 0.18 -4.24 16 9 C -0.14 -6.40 8.63 22.42 0.19 -6.21 16 10 C 0.16 7.09 6.27 38.52 0.24 7.33 16 11 N -0.69 -32.25 4.75 -311.52 -1.48 -33.73 16 12 C 0.53 30.57 7.28 85.01 0.62 31.19 16 13 O -0.62 -40.79 12.54 -4.80 -0.06 -40.85 16 14 C -0.56 -31.22 9.29 23.50 0.22 -31.00 16 15 H 0.09 4.44 7.85 -2.91 -0.02 4.42 16 16 C 0.03 1.71 5.50 85.33 0.47 2.18 16 17 N -0.80 -47.66 11.72 21.85 0.26 -47.40 16 18 Si 1.00 39.36 29.56 68.60 2.03 41.38 16 19 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 20 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 21 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 22 C -0.12 -4.37 5.90 -19.72 -0.12 -4.49 16 23 C -0.10 -2.78 9.46 71.24 0.67 -2.10 16 24 C -0.08 -2.51 9.44 22.42 0.21 -2.30 16 25 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 1.09 7.13 -2.39 -0.02 1.07 16 28 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.04 1.15 6.20 -2.39 -0.01 1.14 16 32 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.13 4.44 4.95 -2.91 -0.01 4.43 16 34 H 0.10 5.32 6.40 -2.91 -0.02 5.30 16 35 H 0.41 15.98 7.71 -92.71 -0.72 15.27 16 36 H 0.28 15.01 8.29 -92.71 -0.77 14.24 16 37 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.06 1.66 7.14 -2.38 -0.02 1.64 16 39 H 0.09 1.92 8.08 -2.39 -0.02 1.90 16 40 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -73.12 337.36 4.33 -68.79 By element: Atomic # 1 Polarization: 36.96 SS G_CDS: 0.34 Total: 37.29 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: 4.38 Total: -21.27 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -1.22 Total: -81.13 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -0.06 Total: -40.85 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.38 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -1.14 Total: -4.22 kcal Total: -73.12 4.33 -68.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184433236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.604 kcal (2) G-P(sol) polarization free energy of solvation -73.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds