Wall clock time and date at job start Tue Mar 31 2020 08:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47092 * 2 1 4 4 S 1.81399 * 109.47147 * 119.99935 * 2 1 3 5 5 C 1.76201 * 103.00081 * 169.85307 * 4 2 1 6 6 C 1.38979 * 120.08039 * 353.29969 * 5 4 2 7 7 C 1.38078 * 119.92020 * 179.76529 * 6 5 4 8 8 C 1.38307 * 120.08238 * 0.47992 * 7 6 5 9 9 C 1.50692 * 119.92500 * 179.74607 * 8 7 6 10 10 H 1.08997 * 109.47441 * 160.02331 * 9 8 7 11 11 C 1.53007 * 109.47060 * 280.02520 * 9 8 7 12 12 N 1.46496 * 109.47190 * 40.02052 * 9 8 7 13 13 C 1.34775 * 120.00234 * 155.00121 * 12 9 8 14 14 O 1.21684 * 120.00223 * 359.97438 * 13 12 9 15 15 C 1.46379 * 120.00313 * 180.02562 * 13 12 9 16 16 H 1.08004 * 119.99501 * 359.97438 * 15 13 12 17 17 C 1.40044 * 120.00253 * 180.02562 * 15 13 12 18 18 N 1.30669 * 120.00150 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 119.99989 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47484 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47250 * 119.99564 * 19 17 15 22 22 H 1.48504 * 109.47162 * 239.99551 * 19 17 15 23 23 C 1.38303 * 120.15657 * 359.77280 * 8 7 6 24 24 C 1.38082 * 120.08322 * 359.97438 * 23 8 7 25 25 H 1.08998 * 109.47814 * 299.99645 * 1 2 3 26 26 H 1.09005 * 109.47343 * 60.00086 * 1 2 3 27 27 H 1.09002 * 109.47148 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47814 * 240.00355 * 2 1 3 29 29 H 1.08997 * 109.47185 * 174.43581 * 3 2 1 30 30 H 1.08994 * 109.47293 * 294.44637 * 3 2 1 31 31 H 1.09004 * 109.46613 * 54.44300 * 3 2 1 32 32 H 1.08004 * 120.03830 * 359.97438 * 6 5 4 33 33 H 1.08001 * 119.96631 * 180.22514 * 7 6 5 34 34 H 1.09004 * 109.46914 * 179.97438 * 11 9 8 35 35 H 1.09001 * 109.47008 * 299.99379 * 11 9 8 36 36 H 1.08997 * 109.47147 * 59.99632 * 11 9 8 37 37 H 0.97008 * 119.99980 * 335.00178 * 12 9 8 38 38 H 0.96995 * 120.00538 * 179.97438 * 18 17 15 39 39 H 1.08006 * 119.96129 * 179.97438 * 23 8 7 40 40 H 1.07998 * 120.04332 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 2.1346 -0.8551 1.4811 5 6 3.8601 -1.0222 1.1657 6 6 4.3803 -0.6604 -0.0712 7 6 5.7337 -0.7881 -0.3132 8 6 6.5699 -1.2849 0.6701 9 6 8.0455 -1.4282 0.4003 10 1 8.5842 -1.4843 1.3462 11 6 8.2950 -2.7050 -0.4052 12 7 8.5172 -0.2698 -0.3624 13 6 9.8125 0.0971 -0.2984 14 8 10.5901 -0.5334 0.3933 15 6 10.2837 1.2550 -1.0600 16 1 9.5935 1.8149 -1.6736 17 6 11.6297 1.6359 -0.9939 18 7 12.4649 0.9582 -0.2519 19 14 12.2312 3.1130 -1.9664 20 1 11.0971 3.7035 -2.7218 21 1 12.7867 4.1267 -1.0341 22 1 13.2880 2.6829 -2.9169 23 6 6.0549 -1.6509 1.9004 24 6 4.7033 -1.5211 2.1514 25 1 -0.3635 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 3.1253 1.4442 0.0996 30 1 1.7601 1.9269 -0.9355 31 1 1.5976 1.9843 0.8361 32 1 3.7273 -0.2765 -0.8411 33 1 6.1393 -0.5037 -1.2729 34 1 9.3624 -2.8084 -0.6008 35 1 7.9441 -3.5670 0.1623 36 1 7.7564 -2.6489 -1.3511 37 1 7.8973 0.2332 -0.9136 38 1 13.3973 1.2218 -0.2064 39 1 6.7107 -2.0389 2.6659 40 1 4.3019 -1.8067 3.1124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185167323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:07 Heat of formation + Delta-G solvation = -30.883408 kcal Electronic energy + Delta-G solvation = -20566.175507 eV Core-core repulsion = 17471.288639 eV Total energy + Delta-G solvation = -3094.886868 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.42593 -37.28097 -35.25740 -34.33313 -32.41706 -31.07885 -30.49669 -28.87730 -27.52014 -26.11001 -23.73742 -22.97774 -21.80894 -20.92101 -19.21158 -17.85951 -17.21006 -16.42361 -15.57287 -15.28630 -15.15227 -14.67923 -14.26312 -13.91207 -13.82356 -13.54904 -13.45530 -13.10774 -12.75909 -12.63874 -12.54798 -12.34400 -11.77170 -11.66075 -11.63093 -11.61190 -11.25533 -11.19527 -10.98063 -10.84320 -10.49709 -10.33350 -10.20305 -10.11259 -9.48687 -8.90275 -8.86715 -7.64314 -7.53924 -7.38193 -6.19103 -4.64655 1.25117 1.40574 1.44882 2.28687 3.12406 3.20664 3.24920 3.75891 4.10467 4.40604 4.48992 4.58448 4.77786 4.83315 4.92782 4.98615 5.08016 5.21963 5.32803 5.42140 5.46052 5.51306 5.57224 5.71557 5.72882 5.76156 5.87978 5.93187 6.05787 6.10782 6.18624 6.30471 6.39578 6.48244 6.76708 6.86884 6.99646 7.42947 7.91427 8.09237 8.32532 9.02210 9.52192 10.59448 10.78076 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021924 B = 0.003317 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.805274 B = 8439.060800 C = 9328.705604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.080 4.080 3 C -0.153 4.153 4 S -0.131 6.131 5 C -0.091 4.091 6 C -0.130 4.130 7 C -0.094 4.094 8 C -0.072 4.072 9 C 0.187 3.813 10 H 0.085 0.915 11 C -0.152 4.152 12 N -0.760 5.760 13 C 0.556 3.444 14 O -0.579 6.579 15 C -0.545 4.545 16 H 0.067 0.933 17 C 0.088 3.912 18 N -0.767 5.767 19 Si 0.907 3.093 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.095 4.095 24 C -0.098 4.098 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.379 0.621 38 H 0.267 0.733 39 H 0.129 0.871 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.417 -2.244 -0.089 21.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.208 4.208 3 C -0.212 4.212 4 S 0.112 5.888 5 C -0.203 4.203 6 C -0.153 4.153 7 C -0.114 4.114 8 C -0.075 4.075 9 C 0.081 3.919 10 H 0.103 0.897 11 C -0.211 4.211 12 N -0.416 5.416 13 C 0.360 3.640 14 O -0.462 6.462 15 C -0.582 4.582 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.396 5.396 19 Si 0.731 3.269 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.116 4.116 24 C -0.121 4.121 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.211 0.789 38 H 0.078 0.922 39 H 0.147 0.853 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -21.398 -3.062 1.428 21.663 hybrid contribution 0.787 1.352 -1.853 2.425 sum -20.611 -1.710 -0.424 20.686 Atomic orbital electron populations 1.21614 0.91530 1.03034 1.02963 1.23340 0.99818 0.99300 0.98372 1.22179 1.02358 0.93836 1.02809 1.85327 1.01164 1.73423 1.28892 1.21545 0.96353 1.05053 0.97360 1.21125 0.96008 1.02590 0.95626 1.20901 0.92456 0.98599 0.99411 1.20343 0.96422 0.97129 0.93616 1.19424 0.87817 0.87736 0.96912 0.89710 1.22154 1.02756 0.96607 0.99538 1.46298 1.11777 1.31525 1.51999 1.18215 0.78968 0.84886 0.81902 1.90594 1.53954 1.57163 1.44507 1.20912 0.94641 1.12992 1.29668 0.91481 1.25697 0.96574 0.96742 0.94182 1.70024 1.03739 1.35128 1.30740 0.86335 0.79180 0.81496 0.79846 1.18811 1.20163 1.20177 1.21003 0.94494 0.99423 0.96640 1.20691 0.92871 1.00502 0.98061 0.91625 0.90865 0.91573 0.88878 0.91433 0.91619 0.91370 0.85951 0.85552 0.91423 0.93126 0.93270 0.78897 0.92174 0.85335 0.85757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 9.20 37.15 0.34 -0.53 16 2 C -0.08 -0.68 2.59 -26.73 -0.07 -0.75 16 3 C -0.15 -1.29 8.73 37.16 0.32 -0.96 16 4 S -0.13 -1.44 21.30 -107.50 -2.29 -3.73 16 5 C -0.09 -1.17 5.97 -39.03 -0.23 -1.41 16 6 C -0.13 -1.66 8.05 -39.37 -0.32 -1.98 16 7 C -0.09 -1.34 9.04 -39.61 -0.36 -1.70 16 8 C -0.07 -1.15 4.96 -104.58 -0.52 -1.66 16 9 C 0.19 3.59 2.77 -69.08 -0.19 3.40 16 10 H 0.08 1.82 7.43 -51.93 -0.39 1.43 16 11 C -0.15 -2.69 9.46 37.16 0.35 -2.33 16 12 N -0.76 -16.83 5.02 -56.35 -0.28 -17.11 16 13 C 0.56 15.65 7.71 -12.99 -0.10 15.55 16 14 O -0.58 -18.49 14.68 5.20 0.08 -18.42 16 15 C -0.55 -15.34 9.54 -35.63 -0.34 -15.68 16 16 H 0.07 1.74 7.85 -52.48 -0.41 1.32 16 17 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 18 N -0.77 -22.96 11.83 55.55 0.66 -22.31 16 19 Si 0.91 20.10 29.56 -169.99 -5.02 15.08 16 20 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 23 C -0.10 -1.37 9.66 -39.61 -0.38 -1.75 16 24 C -0.10 -1.29 9.79 -39.36 -0.39 -1.68 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.78 6.80 -51.92 -0.35 0.42 16 29 H 0.07 0.68 6.18 -51.93 -0.32 0.36 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.12 1.32 5.04 -52.48 -0.26 1.05 16 33 H 0.13 1.71 6.91 -52.49 -0.36 1.35 16 34 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.38 7.46 6.84 -40.82 -0.28 7.18 16 38 H 0.27 7.24 8.29 -40.82 -0.34 6.91 16 39 H 0.13 1.67 8.03 -52.48 -0.42 1.25 16 40 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -33.40 343.26 -9.40 -42.80 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.74 Total: 7.65 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -1.97 Total: -9.14 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.37 Total: -39.42 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.08 Total: -18.42 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.29 Total: -3.73 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.40 -9.40 -42.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185167323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.921 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds