Wall clock time and date at job start Tue Mar 31 2020 08:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47092 * 2 1 4 4 S 1.81399 * 109.47147 * 119.99935 * 2 1 3 5 5 C 1.76201 * 103.00081 * 169.85307 * 4 2 1 6 6 C 1.38979 * 120.08039 * 353.29969 * 5 4 2 7 7 C 1.38078 * 119.92020 * 179.76529 * 6 5 4 8 8 C 1.38307 * 120.08238 * 0.47992 * 7 6 5 9 9 C 1.50692 * 119.92500 * 179.74607 * 8 7 6 10 10 H 1.08997 * 109.47441 * 160.02331 * 9 8 7 11 11 C 1.53007 * 109.47060 * 280.02520 * 9 8 7 12 12 N 1.46496 * 109.47190 * 40.02052 * 9 8 7 13 13 C 1.34775 * 120.00234 * 155.00121 * 12 9 8 14 14 O 1.21684 * 120.00223 * 359.97438 * 13 12 9 15 15 C 1.46379 * 120.00313 * 180.02562 * 13 12 9 16 16 H 1.08004 * 119.99501 * 359.97438 * 15 13 12 17 17 C 1.40044 * 120.00253 * 180.02562 * 15 13 12 18 18 N 1.30669 * 120.00150 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 119.99989 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47484 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47250 * 119.99564 * 19 17 15 22 22 H 1.48504 * 109.47162 * 239.99551 * 19 17 15 23 23 C 1.38303 * 120.15657 * 359.77280 * 8 7 6 24 24 C 1.38082 * 120.08322 * 359.97438 * 23 8 7 25 25 H 1.08998 * 109.47814 * 299.99645 * 1 2 3 26 26 H 1.09005 * 109.47343 * 60.00086 * 1 2 3 27 27 H 1.09002 * 109.47148 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47814 * 240.00355 * 2 1 3 29 29 H 1.08997 * 109.47185 * 174.43581 * 3 2 1 30 30 H 1.08994 * 109.47293 * 294.44637 * 3 2 1 31 31 H 1.09004 * 109.46613 * 54.44300 * 3 2 1 32 32 H 1.08004 * 120.03830 * 359.97438 * 6 5 4 33 33 H 1.08001 * 119.96631 * 180.22514 * 7 6 5 34 34 H 1.09004 * 109.46914 * 179.97438 * 11 9 8 35 35 H 1.09001 * 109.47008 * 299.99379 * 11 9 8 36 36 H 1.08997 * 109.47147 * 59.99632 * 11 9 8 37 37 H 0.97008 * 119.99980 * 335.00178 * 12 9 8 38 38 H 0.96995 * 120.00538 * 179.97438 * 18 17 15 39 39 H 1.08006 * 119.96129 * 179.97438 * 23 8 7 40 40 H 1.07998 * 120.04332 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 2.1346 -0.8551 1.4811 5 6 3.8601 -1.0222 1.1657 6 6 4.3803 -0.6604 -0.0712 7 6 5.7337 -0.7881 -0.3132 8 6 6.5699 -1.2849 0.6701 9 6 8.0455 -1.4282 0.4003 10 1 8.5842 -1.4843 1.3462 11 6 8.2950 -2.7050 -0.4052 12 7 8.5172 -0.2698 -0.3624 13 6 9.8125 0.0971 -0.2984 14 8 10.5901 -0.5334 0.3933 15 6 10.2837 1.2550 -1.0600 16 1 9.5935 1.8149 -1.6736 17 6 11.6297 1.6359 -0.9939 18 7 12.4649 0.9582 -0.2519 19 14 12.2312 3.1130 -1.9664 20 1 11.0971 3.7035 -2.7218 21 1 12.7867 4.1267 -1.0341 22 1 13.2880 2.6829 -2.9169 23 6 6.0549 -1.6509 1.9004 24 6 4.7033 -1.5211 2.1514 25 1 -0.3635 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 3.1253 1.4442 0.0996 30 1 1.7601 1.9269 -0.9355 31 1 1.5976 1.9843 0.8361 32 1 3.7273 -0.2765 -0.8411 33 1 6.1393 -0.5037 -1.2729 34 1 9.3624 -2.8084 -0.6008 35 1 7.9441 -3.5670 0.1623 36 1 7.7564 -2.6489 -1.3511 37 1 7.8973 0.2332 -0.9136 38 1 13.3973 1.2218 -0.2064 39 1 6.7107 -2.0389 2.6659 40 1 4.3019 -1.8067 3.1124 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185167323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:07 Heat of formation + Delta-G solvation = -50.947788 kcal Electronic energy + Delta-G solvation = -20567.045563 eV Core-core repulsion = 17471.288639 eV Total energy + Delta-G solvation = -3095.756925 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.69323 -39.15224 -36.21044 -35.74786 -34.54485 -32.42610 -31.84719 -30.28586 -28.19292 -28.12350 -25.04507 -24.05925 -22.61629 -22.44866 -20.97529 -19.48471 -18.47842 -17.56073 -17.32754 -16.64555 -16.39257 -15.87857 -15.50132 -15.31830 -15.11600 -14.75590 -14.62086 -14.30804 -14.26003 -13.93764 -13.72727 -13.37750 -13.20950 -13.07963 -12.78581 -12.76384 -12.61377 -12.45337 -12.29146 -12.20608 -12.12082 -11.96838 -11.66987 -10.95713 -10.93895 -10.58796 -9.97204 -9.84044 -9.49178 -8.35391 -8.26968 -6.85238 0.14806 0.37431 0.55907 1.40067 1.40172 1.43789 1.57989 2.24479 2.47879 2.64289 3.13935 3.61946 3.73104 3.76602 3.84060 3.87863 3.95292 4.25481 4.32302 4.38792 4.48607 4.54791 4.70093 4.73457 4.75912 4.78188 4.84493 4.90728 4.95500 5.06526 5.18938 5.22504 5.24203 5.25614 5.32051 5.34747 5.60427 5.87007 5.89167 6.23201 6.29981 6.87361 7.54832 8.50358 8.68309 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021924 B = 0.003317 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.805274 B = 8439.060800 C = 9328.705604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 C -0.152 4.152 4 S -0.137 6.137 5 C -0.092 4.092 6 C -0.126 4.126 7 C -0.097 4.097 8 C -0.090 4.090 9 C 0.189 3.811 10 H 0.052 0.948 11 C -0.142 4.142 12 N -0.748 5.748 13 C 0.541 3.459 14 O -0.629 6.629 15 C -0.574 4.574 16 H 0.086 0.914 17 C 0.028 3.972 18 N -0.822 5.822 19 Si 0.997 3.003 20 H -0.247 1.247 21 H -0.269 1.269 22 H -0.268 1.268 23 C -0.101 4.101 24 C -0.102 4.102 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.145 0.855 33 H 0.132 0.868 34 H 0.030 0.970 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.392 0.608 38 H 0.274 0.726 39 H 0.133 0.867 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.051 -0.875 -1.572 24.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.204 4.204 3 C -0.211 4.211 4 S 0.106 5.894 5 C -0.205 4.205 6 C -0.150 4.150 7 C -0.117 4.117 8 C -0.093 4.093 9 C 0.084 3.916 10 H 0.070 0.930 11 C -0.201 4.201 12 N -0.402 5.402 13 C 0.345 3.655 14 O -0.516 6.516 15 C -0.610 4.610 16 H 0.104 0.896 17 C -0.186 4.186 18 N -0.451 5.451 19 Si 0.817 3.183 20 H -0.170 1.170 21 H -0.194 1.194 22 H -0.193 1.193 23 C -0.121 4.121 24 C -0.125 4.125 25 H 0.084 0.916 26 H 0.111 0.889 27 H 0.086 0.914 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.163 0.837 33 H 0.150 0.850 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.227 0.773 38 H 0.084 0.916 39 H 0.151 0.849 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -24.109 -1.704 -0.062 24.169 hybrid contribution 1.427 0.891 -1.349 2.156 sum -22.681 -0.814 -1.411 22.740 Atomic orbital electron populations 1.21636 0.89879 1.03488 1.03920 1.23496 1.01024 0.98936 0.96947 1.22165 1.01133 0.93915 1.03873 1.85403 0.99404 1.73692 1.30907 1.21831 0.97755 1.03722 0.97186 1.21322 0.95514 1.01958 0.96187 1.20971 0.93087 0.98449 0.99215 1.20011 0.94209 0.99983 0.95116 1.19415 0.89937 0.87125 0.95160 0.92960 1.22042 1.00500 0.96974 1.00586 1.45966 1.10273 1.32220 1.51782 1.18567 0.80388 0.84982 0.81539 1.90549 1.55889 1.58683 1.46504 1.21455 0.95864 1.13486 1.30214 0.89584 1.26960 0.96429 1.00279 0.94980 1.70190 1.04492 1.37672 1.32775 0.84979 0.78899 0.76446 0.77997 1.16970 1.19430 1.19339 1.21095 0.95360 0.99439 0.96223 1.20890 0.92341 1.00311 0.98990 0.91633 0.88892 0.91404 0.88284 0.93182 0.89744 0.91353 0.83729 0.85031 0.95122 0.90567 0.91611 0.77343 0.91612 0.84906 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 9.20 71.98 0.66 -0.64 16 2 C -0.08 -1.06 2.59 30.59 0.08 -0.98 16 3 C -0.15 -2.14 8.73 71.98 0.63 -1.51 16 4 S -0.14 -2.72 21.30 -56.49 -1.20 -3.92 16 5 C -0.09 -2.22 5.97 22.62 0.13 -2.09 16 6 C -0.13 -2.98 8.05 22.41 0.18 -2.80 16 7 C -0.10 -2.67 9.04 22.25 0.20 -2.47 16 8 C -0.09 -2.86 4.96 -19.83 -0.10 -2.95 16 9 C 0.19 7.50 2.77 44.25 0.12 7.62 16 10 H 0.05 2.40 7.43 -2.39 -0.02 2.38 16 11 C -0.14 -5.17 9.46 71.98 0.68 -4.49 16 12 N -0.75 -34.00 5.02 -450.41 -2.26 -36.26 16 13 C 0.54 31.60 7.71 86.36 0.67 32.27 16 14 O -0.63 -42.37 14.68 -4.30 -0.06 -42.43 16 15 C -0.57 -32.72 9.54 24.83 0.24 -32.48 16 16 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 17 C 0.03 1.60 5.50 85.30 0.47 2.07 16 18 N -0.82 -50.70 11.83 21.83 0.26 -50.44 16 19 Si 1.00 41.14 29.56 68.60 2.03 43.17 16 20 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 21 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 23 C -0.10 -2.88 9.66 22.25 0.21 -2.66 16 24 C -0.10 -2.57 9.79 22.41 0.22 -2.35 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.10 1.31 6.80 -2.39 -0.02 1.29 16 29 H 0.05 0.89 6.18 -2.39 -0.01 0.88 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.15 2.70 5.04 -2.91 -0.01 2.69 16 33 H 0.13 3.39 6.91 -2.91 -0.02 3.37 16 34 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.39 15.50 6.84 -92.70 -0.63 14.86 16 38 H 0.27 15.27 8.29 -92.71 -0.77 14.50 16 39 H 0.13 3.54 8.03 -2.91 -0.02 3.52 16 40 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -75.27 343.26 3.57 -71.71 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.41 Total: 31.65 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 4.40 Total: -13.47 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -2.00 Total: -86.70 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -0.06 Total: -42.43 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: -2.72 SS G_CDS: -1.20 Total: -3.92 kcal Total: -75.27 3.57 -71.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185167323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.758 kcal (2) G-P(sol) polarization free energy of solvation -75.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds