Wall clock time and date at job start Tue Mar 31 2020 07:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47654 * 2 1 4 4 C 1.50700 * 109.47125 * 239.99878 * 2 1 3 5 5 O 1.21281 * 119.99588 * 333.85916 * 4 2 1 6 6 N 1.34776 * 120.00377 * 153.86283 * 4 2 1 7 7 C 1.47061 * 136.06013 * 174.75577 * 6 4 2 8 8 C 1.53500 * 88.05194 * 152.88046 * 7 6 4 9 9 O 1.42907 * 114.20568 * 272.51029 * 8 7 6 10 10 C 1.50700 * 114.20763 * 139.68208 * 8 7 6 11 11 H 1.07999 * 120.00209 * 0.02562 * 10 8 7 12 12 C 1.37877 * 119.99667 * 179.97438 * 10 8 7 13 13 N 1.31515 * 120.00226 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 119.99475 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47113 * 60.00550 * 14 12 10 16 16 H 1.48502 * 109.46996 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47656 * 300.00386 * 14 12 10 18 18 C 1.47067 * 136.05407 * 354.79650 * 6 4 2 19 19 C 1.50702 * 109.47528 * 119.99964 * 2 1 3 20 20 C 1.38269 * 119.99061 * 240.00234 * 19 2 1 21 21 C 1.38218 * 120.05312 * 179.97438 * 20 19 2 22 22 C 1.38215 * 120.02564 * 359.97438 * 21 20 19 23 23 C 1.38438 * 119.97571 * 0.02562 * 22 21 20 24 24 F 1.35095 * 120.02491 * 180.02562 * 23 22 21 25 25 C 1.38176 * 119.98443 * 59.72033 * 19 2 1 26 26 H 1.09000 * 109.47190 * 184.66273 * 1 2 3 27 27 H 1.09007 * 109.46842 * 304.66291 * 1 2 3 28 28 H 1.09001 * 109.47017 * 64.65759 * 1 2 3 29 29 H 1.08995 * 113.46945 * 267.69201 * 7 6 4 30 30 H 1.09002 * 113.46806 * 38.07201 * 7 6 4 31 31 H 0.96700 * 113.99578 * 179.97438 * 9 8 7 32 32 H 0.96998 * 119.99800 * 179.97438 * 13 12 10 33 33 H 1.08998 * 113.47259 * 321.87397 * 18 6 4 34 34 H 1.09000 * 113.46693 * 92.25669 * 18 6 4 35 35 H 1.08006 * 119.96987 * 359.97363 * 20 19 2 36 36 H 1.08004 * 119.98306 * 180.02562 * 21 20 19 37 37 H 1.08001 * 120.01558 * 180.02562 * 22 21 20 38 38 H 1.08000 * 120.01415 * 0.02562 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 1.3454 -1.5542 -1.7663 6 7 3.2448 -0.4082 -1.7353 7 6 4.0995 -0.9212 -2.8166 8 6 4.7182 0.4796 -2.9212 9 8 4.0151 1.3671 -3.7932 10 6 6.2093 0.4819 -3.1396 11 1 6.7463 -0.4525 -3.2094 12 6 6.8878 1.6769 -3.2515 13 7 6.2338 2.8148 -3.1671 14 14 8.7362 1.6797 -3.5216 15 1 9.0528 0.9677 -4.7857 16 1 9.2219 3.0804 -3.6068 17 1 9.4034 0.9931 -2.3864 18 6 4.2958 0.5792 -1.4469 19 6 2.0324 -0.7104 1.2304 20 6 2.8273 -0.0382 2.1404 21 6 3.2884 -0.6883 3.2697 22 6 2.9548 -2.0113 3.4907 23 6 2.1590 -2.6854 2.5804 24 9 1.8320 -3.9783 2.7957 25 6 1.6937 -2.0316 1.4517 26 1 -0.3633 -1.0243 0.0835 27 1 -0.3633 0.5845 0.8453 28 1 -0.3633 0.4399 -0.9288 29 1 4.8051 -1.6839 -2.4874 30 1 3.5433 -1.2176 -3.7060 31 1 4.4072 2.2487 -3.8566 32 1 6.7113 3.6555 -3.2454 33 1 3.9067 1.5596 -1.1719 34 1 5.0533 0.2165 -0.7521 35 1 3.0881 0.9957 1.9687 36 1 3.9089 -0.1620 3.9799 37 1 3.3149 -2.5190 4.3734 38 1 1.0694 -2.5553 0.7429 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186842624.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:45 Heat of formation + Delta-G solvation = -72.956878 kcal Electronic energy + Delta-G solvation = -23525.623645 eV Core-core repulsion = 19862.699158 eV Total energy + Delta-G solvation = -3662.924486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.90932 -40.12248 -38.94997 -37.45212 -34.04054 -33.90039 -32.22485 -30.62883 -29.52245 -28.78432 -25.76905 -25.14071 -24.10304 -22.73498 -21.84092 -19.93269 -18.30786 -17.62562 -17.29652 -16.66526 -16.21936 -15.88095 -15.63323 -15.40863 -14.97924 -14.87460 -14.23500 -13.94095 -13.74916 -13.36846 -13.15081 -12.91449 -12.64289 -12.41673 -12.05008 -11.95830 -11.86374 -11.76124 -11.58541 -11.21083 -11.07404 -11.03100 -10.95351 -10.52404 -10.29434 -9.69652 -9.31344 -8.95461 -8.81535 -8.68901 -8.41121 -7.87356 -6.43719 -4.53980 1.06522 1.14564 3.08613 3.13816 3.19809 3.22090 3.44175 3.61450 4.15116 4.17149 4.59574 4.68852 4.78657 4.95819 4.97159 5.10601 5.20310 5.29781 5.40066 5.55234 5.71740 5.82076 5.90086 5.93116 5.99442 6.06976 6.16071 6.21638 6.23655 6.37655 6.44332 6.49251 6.60593 6.65100 6.82501 7.07601 7.59564 7.77211 8.46450 8.50595 8.71277 9.17494 9.45696 10.62990 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.018473 B = 0.004440 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.369867 B = 6304.662115 C = 6938.345503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.068 4.068 3 H 0.100 0.900 4 C 0.543 3.457 5 O -0.559 6.559 6 N -0.631 5.631 7 C 0.106 3.894 8 C 0.241 3.759 9 O -0.571 6.571 10 C -0.534 4.534 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.899 5.899 14 Si 0.909 3.091 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.073 3.927 19 C -0.039 4.039 20 C -0.119 4.119 21 C -0.089 4.089 22 C -0.158 4.158 23 C 0.097 3.903 24 F -0.142 7.142 25 C -0.141 4.141 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.394 0.606 32 H 0.275 0.725 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.906 -2.400 12.060 13.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 H 0.118 0.882 4 C 0.332 3.668 5 O -0.439 6.439 6 N -0.363 5.363 7 C -0.017 4.017 8 C 0.199 3.801 9 O -0.384 6.384 10 C -0.572 4.572 11 H 0.090 0.910 12 C -0.129 4.129 13 N -0.539 5.539 14 Si 0.736 3.264 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.050 4.050 19 C -0.040 4.040 20 C -0.137 4.137 21 C -0.108 4.108 22 C -0.177 4.177 23 C 0.078 3.922 24 F -0.120 7.120 25 C -0.160 4.160 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.250 0.750 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.842 -3.240 11.779 13.541 hybrid contribution 1.368 0.356 0.138 1.420 sum -4.474 -2.884 11.917 13.052 Atomic orbital electron populations 1.21646 0.91598 1.03096 1.02246 1.20248 0.98030 1.00126 0.90523 0.88152 1.19726 0.80272 0.82646 0.84177 1.90631 1.56295 1.35222 1.61762 1.49717 1.14969 1.36468 1.35170 1.23328 0.90445 0.98895 0.88990 1.19553 0.89849 0.85825 0.84861 1.86053 1.56579 1.29042 1.66733 1.21393 0.91189 0.93576 1.51023 0.90991 1.25066 0.99743 0.95073 0.93061 1.69250 1.36980 0.97926 1.49780 0.86370 0.83559 0.77337 0.79172 1.19797 1.20950 1.19870 1.24253 0.86623 0.90699 1.03465 1.19342 0.96565 0.93149 0.94921 1.21191 0.97608 1.00745 0.94126 1.20972 0.98784 0.93603 0.97393 1.21131 1.00550 0.95856 1.00116 1.17655 0.99327 0.78972 0.96252 1.91489 1.91157 1.34582 1.94789 1.21114 1.02373 0.95273 0.97250 0.91492 0.91919 0.91609 0.89746 0.91538 0.74978 0.91501 0.91811 0.90156 0.84955 0.84817 0.84895 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 8.54 37.16 0.32 -1.41 16 2 C -0.07 -1.04 2.76 -92.92 -0.26 -1.30 16 3 H 0.10 1.43 7.68 -51.93 -0.40 1.03 16 4 C 0.54 10.79 6.81 -10.99 -0.07 10.71 16 5 O -0.56 -12.59 16.97 5.56 0.09 -12.50 16 6 N -0.63 -13.16 3.69 -184.98 -0.68 -13.85 16 7 C 0.11 2.31 8.03 -8.51 -0.07 2.24 16 8 C 0.24 5.68 1.59 -91.16 -0.14 5.54 16 9 O -0.57 -14.54 13.54 -35.23 -0.48 -15.02 16 10 C -0.53 -13.10 8.70 -34.44 -0.30 -13.40 16 11 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 12 C 0.07 1.77 5.40 -17.82 -0.10 1.68 16 13 N -0.90 -22.20 11.01 55.43 0.61 -21.59 16 14 Si 0.91 19.02 29.54 -169.99 -5.02 14.00 16 15 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 16 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 17 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 18 C 0.07 1.51 7.72 -8.41 -0.06 1.45 16 19 C -0.04 -0.55 4.77 -104.63 -0.50 -1.05 16 20 C -0.12 -1.43 9.67 -39.58 -0.38 -1.81 16 21 C -0.09 -0.95 10.04 -39.60 -0.40 -1.35 16 22 C -0.16 -1.80 10.03 -39.52 -0.40 -2.19 16 23 C 0.10 1.32 7.30 -39.42 -0.29 1.03 16 24 F -0.14 -2.00 17.27 2.25 0.04 -1.96 16 25 C -0.14 -2.07 8.75 -39.51 -0.35 -2.41 16 26 H 0.07 0.93 7.10 -51.93 -0.37 0.56 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.70 8.10 -51.93 -0.42 1.28 16 30 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 31 H 0.39 10.08 6.33 45.56 0.29 10.37 16 32 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 33 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 34 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 35 H 0.13 1.39 7.95 -52.48 -0.42 0.98 16 36 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 38 H 0.14 2.16 7.51 -52.49 -0.39 1.76 16 LS Contribution 330.96 15.07 4.99 4.99 Total: -1.00 -27.98 330.96 -7.66 -35.64 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -4.21 Total: 12.57 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -3.00 Total: -2.28 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.07 Total: -35.43 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.38 Total: -27.52 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.98 -7.66 -35.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186842624.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.316 kcal (2) G-P(sol) polarization free energy of solvation -27.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds