Wall clock time and date at job start Tue Mar 31 2020 07:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47654 * 2 1 4 4 C 1.50700 * 109.47125 * 239.99878 * 2 1 3 5 5 O 1.21281 * 119.99588 * 333.85916 * 4 2 1 6 6 N 1.34776 * 120.00377 * 153.86283 * 4 2 1 7 7 C 1.47061 * 136.06013 * 174.75577 * 6 4 2 8 8 C 1.53500 * 88.05194 * 152.88046 * 7 6 4 9 9 O 1.42907 * 114.20568 * 272.51029 * 8 7 6 10 10 C 1.50700 * 114.20763 * 139.68208 * 8 7 6 11 11 H 1.07999 * 120.00209 * 0.02562 * 10 8 7 12 12 C 1.37877 * 119.99667 * 179.97438 * 10 8 7 13 13 N 1.31515 * 120.00226 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 119.99475 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47113 * 60.00550 * 14 12 10 16 16 H 1.48502 * 109.46996 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47656 * 300.00386 * 14 12 10 18 18 C 1.47067 * 136.05407 * 354.79650 * 6 4 2 19 19 C 1.50702 * 109.47528 * 119.99964 * 2 1 3 20 20 C 1.38269 * 119.99061 * 240.00234 * 19 2 1 21 21 C 1.38218 * 120.05312 * 179.97438 * 20 19 2 22 22 C 1.38215 * 120.02564 * 359.97438 * 21 20 19 23 23 C 1.38438 * 119.97571 * 0.02562 * 22 21 20 24 24 F 1.35095 * 120.02491 * 180.02562 * 23 22 21 25 25 C 1.38176 * 119.98443 * 59.72033 * 19 2 1 26 26 H 1.09000 * 109.47190 * 184.66273 * 1 2 3 27 27 H 1.09007 * 109.46842 * 304.66291 * 1 2 3 28 28 H 1.09001 * 109.47017 * 64.65759 * 1 2 3 29 29 H 1.08995 * 113.46945 * 267.69201 * 7 6 4 30 30 H 1.09002 * 113.46806 * 38.07201 * 7 6 4 31 31 H 0.96700 * 113.99578 * 179.97438 * 9 8 7 32 32 H 0.96998 * 119.99800 * 179.97438 * 13 12 10 33 33 H 1.08998 * 113.47259 * 321.87397 * 18 6 4 34 34 H 1.09000 * 113.46693 * 92.25669 * 18 6 4 35 35 H 1.08006 * 119.96987 * 359.97363 * 20 19 2 36 36 H 1.08004 * 119.98306 * 180.02562 * 21 20 19 37 37 H 1.08001 * 120.01558 * 180.02562 * 22 21 20 38 38 H 1.08000 * 120.01415 * 0.02562 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 1.3454 -1.5542 -1.7663 6 7 3.2448 -0.4082 -1.7353 7 6 4.0995 -0.9212 -2.8166 8 6 4.7182 0.4796 -2.9212 9 8 4.0151 1.3671 -3.7932 10 6 6.2093 0.4819 -3.1396 11 1 6.7463 -0.4525 -3.2094 12 6 6.8878 1.6769 -3.2515 13 7 6.2338 2.8148 -3.1671 14 14 8.7362 1.6797 -3.5216 15 1 9.0528 0.9677 -4.7857 16 1 9.2219 3.0804 -3.6068 17 1 9.4034 0.9931 -2.3864 18 6 4.2958 0.5792 -1.4469 19 6 2.0324 -0.7104 1.2304 20 6 2.8273 -0.0382 2.1404 21 6 3.2884 -0.6883 3.2697 22 6 2.9548 -2.0113 3.4907 23 6 2.1590 -2.6854 2.5804 24 9 1.8320 -3.9783 2.7957 25 6 1.6937 -2.0316 1.4517 26 1 -0.3633 -1.0243 0.0835 27 1 -0.3633 0.5845 0.8453 28 1 -0.3633 0.4399 -0.9288 29 1 4.8051 -1.6839 -2.4874 30 1 3.5433 -1.2176 -3.7060 31 1 4.4072 2.2487 -3.8566 32 1 6.7113 3.6555 -3.2454 33 1 3.9067 1.5596 -1.1719 34 1 5.0533 0.2165 -0.7521 35 1 3.0881 0.9957 1.9687 36 1 3.9089 -0.1620 3.9799 37 1 3.3149 -2.5190 4.3734 38 1 1.0694 -2.5553 0.7429 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186842624.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:45 Heat of formation + Delta-G solvation = -89.923910 kcal Electronic energy + Delta-G solvation = -23526.359390 eV Core-core repulsion = 19862.699158 eV Total energy + Delta-G solvation = -3663.660232 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.95557 -41.58779 -40.24161 -39.00981 -35.89753 -35.08502 -34.11882 -31.60304 -30.67970 -30.33863 -27.48033 -26.85068 -25.32094 -23.73834 -23.06590 -21.53625 -19.89424 -19.29890 -18.46889 -18.15988 -17.27092 -17.16542 -17.02526 -16.71335 -16.52141 -16.35196 -15.95339 -15.22890 -14.87301 -14.71887 -14.56587 -14.37136 -14.08488 -13.82122 -13.52795 -13.40141 -13.10010 -12.98675 -12.82438 -12.76597 -12.72309 -12.34461 -12.21463 -12.14646 -12.00049 -11.36836 -10.95851 -10.65079 -10.25117 -9.96179 -9.69714 -9.58891 -8.26747 -6.43624 0.09213 0.17779 1.49484 1.51872 1.56386 1.59316 1.94582 2.41778 2.56692 2.95253 3.16078 3.45244 3.55939 3.73676 3.78488 4.01448 4.09521 4.15111 4.17595 4.27521 4.41003 4.45485 4.60096 4.70082 4.77234 4.81661 4.89630 4.91501 4.94296 5.06523 5.11703 5.16162 5.24326 5.31992 5.47451 5.73448 5.88324 5.91543 6.61547 6.86634 7.10031 7.30317 7.49999 8.79386 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.018473 B = 0.004440 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.369867 B = 6304.662115 C = 6938.345503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.059 4.059 3 H 0.115 0.885 4 C 0.535 3.465 5 O -0.593 6.593 6 N -0.635 5.635 7 C 0.103 3.897 8 C 0.221 3.779 9 O -0.587 6.587 10 C -0.554 4.554 11 H 0.072 0.928 12 C 0.036 3.964 13 N -0.916 5.916 14 Si 0.968 3.032 15 H -0.277 1.277 16 H -0.281 1.281 17 H -0.266 1.266 18 C 0.091 3.909 19 C -0.053 4.053 20 C -0.117 4.117 21 C -0.079 4.079 22 C -0.149 4.149 23 C 0.078 3.922 24 F -0.150 7.150 25 C -0.159 4.159 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.049 0.951 31 H 0.390 0.610 32 H 0.278 0.722 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.152 0.848 36 H 0.172 0.828 37 H 0.160 0.840 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.553 -1.453 14.387 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.080 4.080 3 H 0.133 0.867 4 C 0.326 3.674 5 O -0.476 6.476 6 N -0.367 5.367 7 C -0.020 4.020 8 C 0.179 3.821 9 O -0.400 6.400 10 C -0.592 4.592 11 H 0.090 0.910 12 C -0.164 4.164 13 N -0.556 5.556 14 Si 0.793 3.207 15 H -0.202 1.202 16 H -0.206 1.206 17 H -0.191 1.191 18 C -0.032 4.032 19 C -0.054 4.054 20 C -0.135 4.135 21 C -0.097 4.097 22 C -0.168 4.168 23 C 0.059 3.941 24 F -0.129 7.129 25 C -0.178 4.178 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.075 0.925 29 H 0.117 0.883 30 H 0.068 0.932 31 H 0.246 0.754 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.170 0.830 36 H 0.189 0.811 37 H 0.178 0.822 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.498 -2.295 14.120 14.996 hybrid contribution 0.925 0.033 -0.598 1.102 sum -3.573 -2.262 13.522 14.168 Atomic orbital electron populations 1.21656 0.90534 1.02943 1.03135 1.20253 0.98923 1.00143 0.88704 0.86744 1.20665 0.79374 0.82320 0.85017 1.90606 1.57009 1.36862 1.63081 1.49800 1.15425 1.36507 1.34943 1.23335 0.90866 0.98656 0.89169 1.19819 0.89751 0.86194 0.86323 1.86040 1.57072 1.29123 1.67738 1.21602 0.91780 0.93931 1.51862 0.90976 1.25715 1.03361 0.94700 0.92668 1.69305 1.38219 0.98281 1.49829 0.85444 0.79087 0.77263 0.78872 1.20218 1.20641 1.19128 1.24005 0.86605 0.90898 1.01647 1.19273 0.98038 0.93001 0.95092 1.21482 0.96433 1.01645 0.93919 1.21408 0.97941 0.93164 0.97188 1.21494 0.98984 0.96222 1.00072 1.17887 1.00483 0.78905 0.96823 1.91463 1.91405 1.35200 1.94842 1.21032 1.03180 0.95888 0.97704 0.92625 0.88740 0.92496 0.88256 0.93212 0.75406 0.91248 0.91336 0.88929 0.82987 0.81070 0.82244 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 8.54 71.98 0.61 -2.68 16 2 C -0.06 -1.76 2.76 -12.29 -0.03 -1.79 16 3 H 0.11 3.04 7.68 -2.39 -0.02 3.02 16 4 C 0.54 21.43 6.81 87.66 0.60 22.02 16 5 O -0.59 -27.58 16.97 -3.03 -0.05 -27.63 16 6 N -0.63 -26.44 3.69 -857.95 -3.17 -29.61 16 7 C 0.10 4.53 8.03 83.18 0.67 5.20 16 8 C 0.22 10.40 1.59 -11.14 -0.02 10.39 16 9 O -0.59 -30.30 13.54 -148.98 -2.02 -32.32 16 10 C -0.55 -26.95 8.70 25.60 0.22 -26.72 16 11 H 0.07 3.41 7.81 -2.91 -0.02 3.39 16 12 C 0.04 1.73 5.40 84.65 0.46 2.18 16 13 N -0.92 -44.57 11.01 21.45 0.24 -44.33 16 14 Si 0.97 38.07 29.54 68.60 2.03 40.10 16 15 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 16 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 17 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 18 C 0.09 3.70 7.72 83.24 0.64 4.34 16 19 C -0.05 -1.43 4.77 -19.87 -0.09 -1.52 16 20 C -0.12 -2.43 9.67 22.27 0.22 -2.22 16 21 C -0.08 -1.36 10.04 22.26 0.22 -1.13 16 22 C -0.15 -2.93 10.03 22.31 0.22 -2.71 16 23 C 0.08 2.05 7.30 22.38 0.16 2.21 16 24 F -0.15 -4.21 17.27 44.97 0.78 -3.43 16 25 C -0.16 -4.64 8.75 22.31 0.20 -4.45 16 26 H 0.05 1.57 7.10 -2.39 -0.02 1.56 16 27 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.10 4.02 8.10 -2.39 -0.02 4.00 16 30 H 0.05 2.31 8.14 -2.39 -0.02 2.30 16 31 H 0.39 20.23 6.33 -74.06 -0.47 19.76 16 32 H 0.28 12.79 8.31 -92.71 -0.77 12.02 16 33 H 0.07 2.70 8.10 -2.39 -0.02 2.68 16 34 H 0.09 3.52 8.10 -2.39 -0.02 3.50 16 35 H 0.15 2.56 7.95 -2.91 -0.02 2.53 16 36 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.12 3.83 7.51 -2.91 -0.02 3.81 16 Total: -1.00 -60.58 330.96 2.50 -58.09 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: 0.62 Total: 36.01 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 4.08 Total: 3.12 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -2.93 Total: -73.94 kcal Atomic # 8 Polarization: -57.88 SS G_CDS: -2.07 Total: -59.95 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.78 Total: -3.43 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Total: -60.58 2.50 -58.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186842624.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.835 kcal (2) G-P(sol) polarization free energy of solvation -60.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds