Wall clock time and date at job start Tue Mar 31 2020 06:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47014 * 2 1 4 4 N 1.46501 * 109.47047 * 180.02562 * 3 2 1 5 5 C 1.33330 * 119.99563 * 82.97071 * 4 3 2 6 6 H 1.08007 * 119.99927 * 171.77945 * 5 4 3 7 7 C 1.46780 * 120.00570 * 351.77531 * 5 4 3 8 8 N 1.29321 * 119.99804 * 1.77198 * 7 5 4 9 9 Si 1.86805 * 120.00311 * 181.77306 * 7 5 4 10 10 H 1.48499 * 109.47164 * 59.99805 * 9 7 5 11 11 H 1.48495 * 109.47210 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46871 * 300.00033 * 9 7 5 13 13 C 1.34776 * 120.00045 * 262.97075 * 4 3 2 14 14 O 1.21468 * 119.99597 * 184.62579 * 13 4 3 15 15 C 1.47693 * 120.00058 * 4.62210 * 13 4 3 16 16 C 1.40110 * 120.57069 * 300.21404 * 15 13 4 17 17 C 1.38328 * 118.28036 * 179.97438 * 16 15 13 18 18 N 1.48017 * 120.33912 * 179.97438 * 17 16 15 19 19 O 1.31704 * 119.99578 * 180.02562 * 18 17 16 20 20 O 1.31695 * 120.00342 * 0.02562 * 18 17 16 21 21 C 1.38371 * 119.31398 * 359.97438 * 17 16 15 22 22 N 1.31939 * 121.09839 * 0.27915 * 21 17 16 23 23 C 1.31678 * 121.88750 * 359.42809 * 22 21 17 24 24 C 1.50693 * 119.72424 * 180.31002 * 23 22 21 25 25 H 1.08999 * 109.47092 * 299.99588 * 1 2 3 26 26 H 1.08995 * 109.47525 * 59.99860 * 1 2 3 27 27 H 1.09004 * 109.46918 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47130 * 239.99917 * 2 1 3 29 29 H 1.09001 * 109.47228 * 119.99864 * 2 1 3 30 30 H 1.08999 * 109.46854 * 60.00267 * 3 2 1 31 31 H 1.09001 * 109.47012 * 299.99997 * 3 2 1 32 32 H 0.97006 * 119.99872 * 179.97438 * 8 7 5 33 33 H 1.08000 * 120.85655 * 359.97438 * 16 15 13 34 34 H 1.08000 * 119.44734 * 179.97438 * 21 17 16 35 35 H 1.08998 * 109.47575 * 274.68539 * 24 23 22 36 36 H 1.09003 * 109.46804 * 34.68377 * 24 23 22 37 37 H 1.09000 * 109.47171 * 154.68249 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1711 1.3014 -1.1470 6 1 5.2428 1.4336 -1.1686 7 6 3.4480 0.9664 -2.3796 8 7 2.1610 0.8418 -2.3607 9 14 4.3869 0.7199 -3.9757 10 1 5.3550 -0.3944 -3.8135 11 1 3.4329 0.3928 -5.0656 12 1 5.1190 1.9661 -4.3167 13 6 4.1794 1.5852 1.1575 14 8 5.3911 1.6696 1.1483 15 6 3.4451 1.6390 2.4379 16 6 2.4930 2.6399 2.6718 17 6 1.8328 2.6453 3.8873 18 7 0.8187 3.6821 4.1828 19 8 0.1945 3.6811 5.3426 20 8 0.5404 4.6056 3.2861 21 6 2.1303 1.6713 4.8241 22 7 3.0355 0.7434 4.5785 23 6 3.6868 0.6923 3.4352 24 6 4.7060 -0.3932 3.2037 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 1.6831 0.6207 -3.1754 33 1 2.2801 3.3879 1.9224 34 1 1.6165 1.6737 5.7740 35 1 5.6670 -0.0828 3.6137 36 1 4.3796 -1.3091 3.6965 37 1 4.8086 -0.5731 2.1336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193552663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:06 Heat of formation + Delta-G solvation = 48.033175 kcal Electronic energy + Delta-G solvation = -24195.988942 eV Core-core repulsion = 20558.230939 eV Total energy + Delta-G solvation = -3637.758002 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.03966 -38.96270 -38.31167 -35.71895 -34.40102 -33.45403 -32.85506 -32.12482 -31.97119 -28.97185 -26.12604 -25.63125 -25.37643 -23.71277 -22.20020 -20.94208 -20.11752 -18.40619 -18.12039 -17.30003 -16.75387 -16.39926 -16.02240 -15.94561 -15.05380 -14.66570 -14.19094 -14.01065 -13.75276 -13.58578 -13.25306 -12.58426 -12.47964 -12.41154 -12.16978 -12.00689 -11.55871 -11.32955 -11.29559 -11.21027 -11.05110 -10.72379 -10.63737 -10.59083 -10.49660 -10.26232 -10.05722 -9.99524 -9.28840 -9.10904 -8.67140 -8.27277 -6.77302 -3.96238 -0.67975 0.72835 1.05801 1.11278 2.87287 3.00245 3.02628 3.19706 3.59075 3.78523 3.97518 4.20071 4.26584 4.51494 4.57412 4.75487 4.99725 5.31566 5.42148 5.61492 5.64499 5.74660 5.75165 5.83128 5.94051 6.01115 6.06567 6.18606 6.38140 6.46020 6.60604 6.71775 6.78754 6.82035 7.21947 7.32202 7.48628 7.66964 8.13070 8.77983 9.03495 9.70784 10.08154 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.005574 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.658938 B = 5021.952358 C = 5613.276499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 C 0.104 3.896 4 N -0.387 5.387 5 C -0.328 4.328 6 H 0.116 0.884 7 C 0.037 3.963 8 N -0.824 5.824 9 Si 0.939 3.061 10 H -0.267 1.267 11 H -0.280 1.280 12 H -0.267 1.267 13 C 0.431 3.569 14 O -0.588 6.588 15 C -0.120 4.120 16 C 0.005 3.995 17 C -0.070 4.070 18 N -0.006 5.006 19 O -0.177 6.177 20 O -0.172 6.172 21 C 0.169 3.831 22 N -0.471 5.471 23 C 0.204 3.796 24 C -0.106 4.106 25 H 0.033 0.967 26 H 0.059 0.941 27 H 0.041 0.959 28 H 0.098 0.902 29 H 0.024 0.976 30 H 0.033 0.967 31 H 0.124 0.876 32 H 0.281 0.719 33 H 0.166 0.834 34 H 0.182 0.818 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 -2.514 5.072 6.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C -0.019 4.019 4 N -0.097 5.097 5 C -0.457 4.457 6 H 0.134 0.866 7 C -0.175 4.175 8 N -0.458 5.458 9 Si 0.764 3.236 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.192 1.192 13 C 0.222 3.778 14 O -0.477 6.477 15 C -0.127 4.127 16 C -0.022 4.022 17 C -0.159 4.159 18 N 0.472 4.528 19 O -0.369 6.369 20 O -0.365 6.365 21 C 0.008 3.992 22 N -0.181 5.181 23 C 0.067 3.933 24 C -0.163 4.163 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.116 0.884 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.142 0.858 32 H 0.094 0.906 33 H 0.184 0.816 34 H 0.199 0.801 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.631 -3.601 5.331 6.637 hybrid contribution -0.539 0.934 -1.185 1.602 sum -2.170 -2.667 4.146 5.386 Atomic orbital electron populations 1.21582 0.96933 1.00171 1.00778 1.21880 0.94410 0.97590 1.01509 1.22223 0.80038 0.97995 1.01647 1.42796 1.05949 1.55623 1.05372 1.20761 0.94352 1.47032 0.83597 0.86634 1.26951 0.95209 0.95000 1.00308 1.69121 1.07964 1.38880 1.29876 0.85769 0.79231 0.79815 0.78760 1.19206 1.20513 1.19183 1.16956 0.87061 0.92005 0.81815 1.90613 1.12552 1.59214 1.85296 1.21327 0.96952 0.95233 0.99197 1.21839 0.89906 0.96772 0.93695 1.21439 0.98956 0.95358 1.00182 1.50322 0.99809 1.01033 1.01671 1.96247 1.51872 1.82210 1.06615 1.96295 1.70868 1.29613 1.39756 1.22842 0.91688 0.86561 0.98142 1.67962 1.07104 1.22156 1.20853 1.21970 0.91724 0.92809 0.86810 1.20872 0.96011 0.94671 1.04716 0.94767 0.92155 0.93967 0.88352 0.95723 0.94938 0.85839 0.90617 0.81624 0.80069 0.88821 0.90049 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.91 37.16 0.37 -1.88 16 2 C -0.12 -2.22 5.46 -26.73 -0.15 -2.36 16 3 C 0.10 2.11 4.55 -4.04 -0.02 2.10 16 4 N -0.39 -8.81 2.55 -114.38 -0.29 -9.10 16 5 C -0.33 -7.96 9.71 -13.45 -0.13 -8.09 16 6 H 0.12 2.98 7.22 -52.48 -0.38 2.61 16 7 C 0.04 0.82 5.35 -15.16 -0.08 0.74 16 8 N -0.82 -17.60 7.37 56.00 0.41 -17.19 16 9 Si 0.94 17.75 29.65 -169.99 -5.04 12.71 16 10 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 11 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 12 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 13 C 0.43 9.67 5.81 -12.40 -0.07 9.60 16 14 O -0.59 -14.95 15.94 5.39 0.09 -14.87 16 15 C -0.12 -2.25 4.96 -104.82 -0.52 -2.77 16 16 C 0.00 0.08 7.22 -38.85 -0.28 -0.20 16 17 C -0.07 -1.12 6.90 -79.87 -0.55 -1.67 16 18 N -0.01 -0.11 4.98 34.00 0.17 0.06 16 19 O -0.18 -2.92 19.17 -31.57 -0.61 -3.52 16 20 O -0.17 -3.10 19.22 -31.56 -0.61 -3.71 16 21 C 0.17 2.42 10.73 -17.46 -0.19 2.24 16 22 N -0.47 -7.23 10.26 -9.12 -0.09 -7.32 16 23 C 0.20 3.43 6.82 -82.15 -0.56 2.87 16 24 C -0.11 -1.59 9.57 36.00 0.34 -1.25 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.10 2.09 5.90 -51.93 -0.31 1.78 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.03 0.62 4.24 -51.93 -0.22 0.40 16 31 H 0.12 2.70 5.85 -51.93 -0.30 2.39 16 32 H 0.28 5.64 8.26 -40.82 -0.34 5.31 16 33 H 0.17 2.84 7.02 -52.49 -0.37 2.47 16 34 H 0.18 2.08 7.58 -52.49 -0.40 1.68 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.09 1.60 6.74 -51.93 -0.35 1.25 16 LS Contribution 319.10 15.07 4.81 4.81 Total: -1.00 -25.71 319.10 -6.99 -32.70 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -3.99 Total: 6.11 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -1.84 Total: -0.68 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.20 Total: -33.55 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -1.13 Total: -22.10 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.04 Total: 12.71 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -25.71 -6.99 -32.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193552663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.731 kcal (2) G-P(sol) polarization free energy of solvation -25.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds