Wall clock time and date at job start Tue Mar 31 2020 06:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47014 * 2 1 4 4 N 1.46501 * 109.47047 * 180.02562 * 3 2 1 5 5 C 1.33330 * 119.99563 * 82.97071 * 4 3 2 6 6 H 1.08007 * 119.99927 * 171.77945 * 5 4 3 7 7 C 1.46780 * 120.00570 * 351.77531 * 5 4 3 8 8 N 1.29321 * 119.99804 * 1.77198 * 7 5 4 9 9 Si 1.86805 * 120.00311 * 181.77306 * 7 5 4 10 10 H 1.48499 * 109.47164 * 59.99805 * 9 7 5 11 11 H 1.48495 * 109.47210 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46871 * 300.00033 * 9 7 5 13 13 C 1.34776 * 120.00045 * 262.97075 * 4 3 2 14 14 O 1.21468 * 119.99597 * 184.62579 * 13 4 3 15 15 C 1.47693 * 120.00058 * 4.62210 * 13 4 3 16 16 C 1.40110 * 120.57069 * 300.21404 * 15 13 4 17 17 C 1.38328 * 118.28036 * 179.97438 * 16 15 13 18 18 N 1.48017 * 120.33912 * 179.97438 * 17 16 15 19 19 O 1.31704 * 119.99578 * 180.02562 * 18 17 16 20 20 O 1.31695 * 120.00342 * 0.02562 * 18 17 16 21 21 C 1.38371 * 119.31398 * 359.97438 * 17 16 15 22 22 N 1.31939 * 121.09839 * 0.27915 * 21 17 16 23 23 C 1.31678 * 121.88750 * 359.42809 * 22 21 17 24 24 C 1.50693 * 119.72424 * 180.31002 * 23 22 21 25 25 H 1.08999 * 109.47092 * 299.99588 * 1 2 3 26 26 H 1.08995 * 109.47525 * 59.99860 * 1 2 3 27 27 H 1.09004 * 109.46918 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47130 * 239.99917 * 2 1 3 29 29 H 1.09001 * 109.47228 * 119.99864 * 2 1 3 30 30 H 1.08999 * 109.46854 * 60.00267 * 3 2 1 31 31 H 1.09001 * 109.47012 * 299.99997 * 3 2 1 32 32 H 0.97006 * 119.99872 * 179.97438 * 8 7 5 33 33 H 1.08000 * 120.85655 * 359.97438 * 16 15 13 34 34 H 1.08000 * 119.44734 * 179.97438 * 21 17 16 35 35 H 1.08998 * 109.47575 * 274.68539 * 24 23 22 36 36 H 1.09003 * 109.46804 * 34.68377 * 24 23 22 37 37 H 1.09000 * 109.47171 * 154.68249 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1711 1.3014 -1.1470 6 1 5.2428 1.4336 -1.1686 7 6 3.4480 0.9664 -2.3796 8 7 2.1610 0.8418 -2.3607 9 14 4.3869 0.7199 -3.9757 10 1 5.3550 -0.3944 -3.8135 11 1 3.4329 0.3928 -5.0656 12 1 5.1190 1.9661 -4.3167 13 6 4.1794 1.5852 1.1575 14 8 5.3911 1.6696 1.1483 15 6 3.4451 1.6390 2.4379 16 6 2.4930 2.6399 2.6718 17 6 1.8328 2.6453 3.8873 18 7 0.8187 3.6821 4.1828 19 8 0.1945 3.6811 5.3426 20 8 0.5404 4.6056 3.2861 21 6 2.1303 1.6713 4.8241 22 7 3.0355 0.7434 4.5785 23 6 3.6868 0.6923 3.4352 24 6 4.7060 -0.3932 3.2037 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 1.6831 0.6207 -3.1754 33 1 2.2801 3.3879 1.9224 34 1 1.6165 1.6737 5.7740 35 1 5.6670 -0.0828 3.6137 36 1 4.3796 -1.3091 3.6965 37 1 4.8086 -0.5731 2.1336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193552663.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:05 Heat of formation + Delta-G solvation = 34.703747 kcal Electronic energy + Delta-G solvation = -24196.566949 eV Core-core repulsion = 20558.230939 eV Total energy + Delta-G solvation = -3638.336010 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.43472 -40.52054 -39.73558 -37.44414 -35.75519 -34.81477 -34.38097 -33.63139 -33.58751 -30.29871 -27.72585 -26.97669 -26.87229 -25.21390 -23.57760 -22.48155 -21.65991 -19.85631 -19.49772 -19.00109 -18.17950 -17.85967 -17.36930 -17.32576 -16.73469 -16.15423 -15.65442 -15.56967 -15.35789 -14.93563 -14.84439 -14.06052 -13.77347 -13.73337 -13.67649 -13.31673 -13.14220 -12.85083 -12.71150 -12.57248 -12.55312 -12.25384 -12.15956 -12.09136 -11.99491 -11.77729 -11.47448 -11.41975 -10.80604 -10.69467 -10.38965 -9.97566 -8.46259 -5.79205 -2.01937 -0.61690 -0.28557 -0.22158 1.31203 1.43629 1.49478 1.74795 2.06565 2.21795 2.62343 2.78743 2.89781 2.96504 3.14108 3.20634 3.62915 3.82196 4.15396 4.17906 4.26528 4.32408 4.41836 4.51379 4.56576 4.67615 4.73012 4.79853 4.97150 5.08595 5.12600 5.14782 5.32361 5.42942 5.54914 5.70118 5.88415 6.17988 6.38685 7.03501 7.31330 7.97943 8.37513 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.005574 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.658938 B = 5021.952358 C = 5613.276499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.108 4.108 3 C 0.109 3.891 4 N -0.394 5.394 5 C -0.380 4.380 6 H 0.085 0.915 7 C 0.019 3.981 8 N -0.823 5.823 9 Si 0.995 3.005 10 H -0.272 1.272 11 H -0.262 1.262 12 H -0.273 1.273 13 C 0.427 3.573 14 O -0.630 6.630 15 C -0.142 4.142 16 C 0.009 3.991 17 C -0.074 4.074 18 N -0.005 5.005 19 O -0.135 6.135 20 O -0.223 6.223 21 C 0.198 3.802 22 N -0.464 5.464 23 C 0.214 3.786 24 C -0.104 4.104 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.022 0.978 30 H 0.045 0.955 31 H 0.108 0.892 32 H 0.289 0.711 33 H 0.159 0.841 34 H 0.223 0.777 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 -3.530 6.890 8.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.146 4.146 3 C -0.013 4.013 4 N -0.105 5.105 5 C -0.509 4.509 6 H 0.103 0.897 7 C -0.193 4.193 8 N -0.456 5.456 9 Si 0.817 3.183 10 H -0.197 1.197 11 H -0.186 1.186 12 H -0.199 1.199 13 C 0.218 3.782 14 O -0.522 6.522 15 C -0.149 4.149 16 C -0.017 4.017 17 C -0.163 4.163 18 N 0.473 4.527 19 O -0.341 6.341 20 O -0.403 6.403 21 C 0.037 3.963 22 N -0.174 5.174 23 C 0.078 3.922 24 C -0.161 4.161 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.102 0.898 33 H 0.177 0.823 34 H 0.239 0.761 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.304 -4.558 7.026 9.003 hybrid contribution -0.096 1.216 -1.482 1.919 sum -3.400 -3.342 5.545 7.312 Atomic orbital electron populations 1.21504 0.94538 1.01458 1.01088 1.21743 0.96346 0.96241 1.00253 1.22187 0.78866 0.98880 1.01371 1.42885 1.06776 1.55561 1.05272 1.20561 0.93546 1.51316 0.85473 0.89703 1.27498 0.96055 0.94003 1.01765 1.69154 1.08225 1.37414 1.30801 0.84976 0.78292 0.79013 0.75969 1.19727 1.18648 1.19856 1.17401 0.86845 0.91077 0.82889 1.90557 1.14486 1.60800 1.86327 1.20995 0.98369 0.97174 0.98327 1.21714 0.89513 0.96089 0.94421 1.21438 0.99021 0.95823 1.00051 1.50357 0.99742 1.01044 1.01570 1.96220 1.50506 1.81225 1.06142 1.96331 1.72631 1.30948 1.40348 1.23547 0.89874 0.84355 0.98555 1.68142 1.07289 1.22332 1.19610 1.22203 0.91306 0.92241 0.86465 1.20903 0.96230 0.95589 1.03385 0.93817 0.92439 0.92178 0.90542 0.95947 0.93725 0.87467 0.89794 0.82333 0.76058 0.87873 0.86927 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 9.91 71.98 0.71 -3.29 16 2 C -0.11 -4.11 5.46 30.60 0.17 -3.95 16 3 C 0.11 4.55 4.55 86.38 0.39 4.95 16 4 N -0.39 -18.87 2.55 -634.10 -1.62 -20.49 16 5 C -0.38 -19.54 9.71 86.70 0.84 -18.70 16 6 H 0.09 4.76 7.22 -2.91 -0.02 4.74 16 7 C 0.02 0.86 5.35 87.30 0.47 1.33 16 8 N -0.82 -35.50 7.37 23.26 0.17 -35.32 16 9 Si 0.99 37.00 29.65 68.60 2.03 39.03 16 10 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 11 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 12 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 13 C 0.43 20.02 5.81 86.74 0.50 20.53 16 14 O -0.63 -33.91 15.94 -3.62 -0.06 -33.97 16 15 C -0.14 -5.33 4.96 -19.99 -0.10 -5.43 16 16 C 0.01 0.32 7.22 22.75 0.16 0.48 16 17 C -0.07 -2.18 6.90 36.43 0.25 -1.93 16 18 N 0.00 -0.14 4.98 -46.34 -0.23 -0.37 16 19 O -0.14 -3.91 19.17 3.51 0.07 -3.85 16 20 O -0.22 -7.93 19.22 3.52 0.07 -7.86 16 21 C 0.20 4.84 10.73 84.71 0.91 5.74 16 22 N -0.46 -12.60 10.26 -182.76 -1.88 -14.48 16 23 C 0.21 6.87 6.82 42.91 0.29 7.16 16 24 C -0.10 -3.04 9.57 71.23 0.68 -2.35 16 25 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 28 H 0.08 3.28 5.90 -2.38 -0.01 3.26 16 29 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.04 1.72 4.24 -2.39 -0.01 1.71 16 31 H 0.11 4.81 5.85 -2.39 -0.01 4.80 16 32 H 0.29 11.46 8.26 -92.70 -0.77 10.69 16 33 H 0.16 5.59 7.02 -2.91 -0.02 5.57 16 34 H 0.22 3.69 7.58 -2.91 -0.02 3.67 16 35 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.07 2.34 6.74 -2.39 -0.02 2.32 16 Total: -1.00 -57.67 319.10 4.97 -52.70 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.12 Total: 20.06 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 5.29 Total: 4.55 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: -3.55 Total: -70.66 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: 0.08 Total: -45.68 kcal Atomic # 14 Polarization: 37.00 SS G_CDS: 2.03 Total: 39.03 kcal Total: -57.67 4.97 -52.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193552663.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.408 kcal (2) G-P(sol) polarization free energy of solvation -57.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds