Wall clock time and date at job start Tue Mar 31 2020 07:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46819 * 2 1 4 4 C 1.50702 * 109.47313 * 119.99914 * 2 1 3 5 5 O 1.21278 * 119.99664 * 33.47697 * 4 2 1 6 6 N 1.34774 * 120.00052 * 213.47450 * 4 2 1 7 7 C 1.47066 * 136.05502 * 4.83125 * 6 4 2 8 8 C 1.53756 * 87.88714 * 152.96419 * 7 6 4 9 9 O 1.42898 * 114.39286 * 272.67671 * 8 7 6 10 10 C 1.50702 * 114.26991 * 139.79011 * 8 7 6 11 11 H 1.08000 * 119.99963 * 266.47640 * 10 8 7 12 12 C 1.37870 * 119.99906 * 86.47427 * 10 8 7 13 13 N 1.31516 * 120.00064 * 0.02562 * 12 10 8 14 14 Si 1.86805 * 120.00083 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47321 * 89.99892 * 14 12 10 16 16 H 1.48499 * 109.47226 * 210.00030 * 14 12 10 17 17 H 1.48497 * 109.46968 * 330.00225 * 14 12 10 18 18 C 1.47065 * 136.05654 * 185.20039 * 6 4 2 19 19 C 1.50699 * 109.47163 * 240.00160 * 2 1 3 20 20 C 1.38222 * 120.01242 * 300.02224 * 19 2 1 21 21 C 1.38217 * 120.02800 * 179.97438 * 20 19 2 22 22 C 1.38271 * 120.05166 * 0.02562 * 21 20 19 23 23 C 1.38180 * 120.02288 * 0.02562 * 22 21 20 24 24 C 1.38440 * 120.01245 * 119.99575 * 19 2 1 25 25 F 1.35092 * 120.02392 * 359.75017 * 24 19 2 26 26 H 1.09000 * 109.47332 * 55.32685 * 1 2 3 27 27 H 1.09001 * 109.47224 * 175.32810 * 1 2 3 28 28 H 1.09001 * 109.47171 * 295.32872 * 1 2 3 29 29 H 1.09003 * 113.46753 * 267.68980 * 7 6 4 30 30 H 1.08999 * 113.47323 * 38.13409 * 7 6 4 31 31 H 0.96703 * 114.00117 * 273.58363 * 9 8 7 32 32 H 0.97002 * 119.99634 * 180.02562 * 13 12 10 33 33 H 1.08993 * 113.47074 * 321.86757 * 18 6 4 34 34 H 1.09007 * 113.46472 * 92.24602 * 18 6 4 35 35 H 1.08003 * 119.98527 * 359.97239 * 20 19 2 36 36 H 1.07996 * 119.97948 * 179.97438 * 21 20 19 37 37 H 1.08000 * 119.98731 * 180.02562 * 22 21 20 38 38 H 1.08003 * 120.01122 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.4086 -1.6440 1.6888 6 7 3.1749 -0.3082 1.8215 7 6 4.1342 0.7906 1.6341 8 6 4.4748 0.6723 3.1287 9 8 3.6333 1.4432 3.9886 10 6 5.9414 0.8184 3.4432 11 1 6.5686 -0.0581 3.5131 12 6 6.4825 2.0708 3.6416 13 7 5.7187 3.1381 3.5570 14 14 8.3006 2.2520 4.0308 15 1 9.0658 2.3942 2.7661 16 1 8.5088 3.4568 4.8735 17 1 8.7725 1.0488 4.7621 18 6 4.0145 -0.7789 2.9334 19 6 2.0324 -0.7104 -1.2305 20 6 1.6982 -2.0335 -1.4497 21 6 2.1583 -2.6852 -2.5784 22 6 2.9537 -2.0147 -3.4893 23 6 3.2900 -0.6922 -3.2716 24 6 2.8282 -0.0378 -2.1419 25 9 3.1508 1.2571 -1.9315 26 1 -0.3634 0.5846 -0.8451 27 1 -0.3634 -1.0243 -0.0837 28 1 -0.3633 0.4396 0.9289 29 1 4.9657 0.5337 0.9778 30 1 3.6635 1.7372 1.3682 31 1 3.9260 2.3569 4.1096 32 1 6.0995 4.0193 3.6962 33 1 3.4419 -1.1696 3.7745 34 1 4.8138 -1.4504 2.6197 35 1 1.0774 -2.5584 -0.7388 36 1 1.8971 -3.7192 -2.7488 37 1 3.3124 -2.5248 -4.3711 38 1 3.9109 -0.1685 -3.9834 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193983244.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:57 Heat of formation + Delta-G solvation = -70.991164 kcal Electronic energy + Delta-G solvation = -23830.635889 eV Core-core repulsion = 20167.796643 eV Total energy + Delta-G solvation = -3662.839247 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.85336 -40.00708 -38.92564 -37.44320 -34.00858 -33.96608 -32.18832 -30.60003 -29.47376 -28.72866 -25.73530 -25.09987 -24.10638 -22.73412 -21.79139 -19.87710 -18.21009 -17.67053 -17.45327 -16.71506 -16.18045 -15.78280 -15.61280 -15.26152 -14.87459 -14.66521 -14.20724 -14.07277 -13.72574 -13.15219 -13.10819 -12.95107 -12.64138 -12.39659 -12.12256 -11.98308 -11.89810 -11.74222 -11.55895 -11.14302 -11.03235 -10.99945 -10.87738 -10.48881 -10.25777 -9.66542 -9.29087 -8.95697 -8.79323 -8.63205 -8.37471 -7.84296 -6.40138 -4.50488 1.07056 1.15204 3.11035 3.14513 3.22605 3.25800 3.46355 3.63093 4.18137 4.24396 4.61091 4.68588 4.81737 4.86818 5.00409 5.12113 5.23838 5.32388 5.42230 5.58384 5.76118 5.86060 5.93958 5.95196 6.01771 6.06420 6.17533 6.22497 6.34289 6.36253 6.40942 6.53486 6.63307 6.69684 6.82991 7.11069 7.63011 7.80520 8.48889 8.53632 8.74028 9.20859 9.49122 10.66682 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.018851 B = 0.004799 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.953298 B = 5832.809579 C = 6445.967482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.069 4.069 3 H 0.099 0.901 4 C 0.546 3.454 5 O -0.560 6.560 6 N -0.631 5.631 7 C 0.073 3.927 8 C 0.241 3.759 9 O -0.571 6.571 10 C -0.534 4.534 11 H 0.072 0.928 12 C 0.072 3.928 13 N -0.898 5.898 14 Si 0.909 3.091 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.270 1.270 18 C 0.106 3.894 19 C -0.103 4.103 20 C -0.077 4.077 21 C -0.131 4.131 22 C -0.094 4.094 23 C -0.156 4.156 24 C 0.108 3.892 25 F -0.133 7.133 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.394 0.606 32 H 0.274 0.726 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.138 0.862 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.877 -5.388 -12.846 14.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 H 0.117 0.883 4 C 0.335 3.665 5 O -0.440 6.440 6 N -0.363 5.363 7 C -0.051 4.051 8 C 0.199 3.801 9 O -0.384 6.384 10 C -0.572 4.572 11 H 0.091 0.909 12 C -0.130 4.130 13 N -0.538 5.538 14 Si 0.736 3.264 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.195 1.195 18 C -0.016 4.016 19 C -0.104 4.104 20 C -0.095 4.095 21 C -0.150 4.150 22 C -0.113 4.113 23 C -0.175 4.175 24 C 0.089 3.911 25 F -0.112 7.112 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.250 0.750 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.156 0.844 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.710 -6.221 -12.630 15.193 hybrid contribution 1.440 1.057 -0.009 1.786 sum -4.270 -5.165 -12.639 14.305 Atomic orbital electron populations 1.21634 0.91462 1.03044 1.02262 1.20123 0.98142 1.00406 0.90400 0.88291 1.19670 0.79949 0.83354 0.83564 1.90610 1.57279 1.30590 1.65570 1.49753 1.21235 1.31081 1.34226 1.24274 0.89005 0.88368 1.03406 1.19569 0.88927 0.86619 0.84963 1.86043 1.54070 1.30129 1.68143 1.21425 0.92691 0.93541 1.49511 0.90940 1.25077 0.99290 0.95382 0.93270 1.69263 1.36391 0.98801 1.49387 0.86310 0.83539 0.78013 0.78550 1.20285 1.20849 1.19496 1.23327 0.91372 0.99183 0.87710 1.19569 0.99751 0.95354 0.95753 1.21090 0.98398 0.92904 0.97154 1.21191 0.98834 1.00358 0.94580 1.21005 0.97347 0.93527 0.99377 1.21110 1.02918 0.96028 0.97403 1.17574 0.98420 0.79272 0.95884 1.91514 1.90956 1.33905 1.94779 0.92004 0.91348 0.91640 0.90255 0.91743 0.74957 0.91553 0.91497 0.89744 0.84374 0.85330 0.85139 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 8.64 37.16 0.32 -1.48 16 2 C -0.07 -1.16 2.80 -92.92 -0.26 -1.42 16 3 H 0.10 1.71 6.64 -51.93 -0.35 1.36 16 4 C 0.55 11.24 6.73 -10.99 -0.07 11.16 16 5 O -0.56 -12.62 16.67 5.56 0.09 -12.53 16 6 N -0.63 -13.76 3.69 -185.03 -0.68 -14.44 16 7 C 0.07 1.61 7.63 -8.37 -0.06 1.55 16 8 C 0.24 5.88 1.58 -91.12 -0.14 5.74 16 9 O -0.57 -14.96 13.55 -35.23 -0.48 -15.44 16 10 C -0.53 -13.46 8.70 -34.44 -0.30 -13.76 16 11 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 12 C 0.07 1.81 5.39 -17.82 -0.10 1.71 16 13 N -0.90 -22.91 11.01 55.43 0.61 -22.30 16 14 Si 0.91 19.48 29.54 -169.99 -5.02 14.46 16 15 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 17 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 18 C 0.11 2.37 8.02 -8.50 -0.07 2.30 16 19 C -0.10 -1.56 4.78 -104.55 -0.50 -2.06 16 20 C -0.08 -1.05 8.76 -39.59 -0.35 -1.40 16 21 C -0.13 -1.44 10.04 -39.58 -0.40 -1.84 16 22 C -0.09 -0.97 10.04 -39.59 -0.40 -1.36 16 23 C -0.16 -1.84 10.03 -39.51 -0.40 -2.24 16 24 C 0.11 1.57 7.25 -39.42 -0.29 1.29 16 25 F -0.13 -2.11 16.19 2.25 0.04 -2.07 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.95 7.10 -51.93 -0.37 0.58 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 1.71 8.10 -51.93 -0.42 1.29 16 30 H 0.06 1.45 7.98 -51.93 -0.41 1.03 16 31 H 0.39 10.39 6.32 45.56 0.29 10.68 16 32 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 33 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.08 1.73 8.10 -51.93 -0.42 1.31 16 35 H 0.14 1.92 7.12 -52.48 -0.37 1.55 16 36 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 328.45 15.07 4.95 4.95 Total: -1.00 -28.60 328.45 -7.64 -36.23 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -4.14 Total: 12.95 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -3.01 Total: -1.81 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: -0.07 Total: -36.74 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.38 Total: -27.97 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.60 -7.64 -36.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193983244.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.756 kcal (2) G-P(sol) polarization free energy of solvation -28.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds