Wall clock time and date at job start Tue Mar 31 2020 07:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46819 * 2 1 4 4 C 1.50702 * 109.47313 * 119.99914 * 2 1 3 5 5 O 1.21278 * 119.99664 * 33.47697 * 4 2 1 6 6 N 1.34774 * 120.00052 * 213.47450 * 4 2 1 7 7 C 1.47066 * 136.05502 * 4.83125 * 6 4 2 8 8 C 1.53756 * 87.88714 * 152.96419 * 7 6 4 9 9 O 1.42898 * 114.39286 * 272.67671 * 8 7 6 10 10 C 1.50702 * 114.26991 * 139.79011 * 8 7 6 11 11 H 1.08000 * 119.99963 * 266.47640 * 10 8 7 12 12 C 1.37870 * 119.99906 * 86.47427 * 10 8 7 13 13 N 1.31516 * 120.00064 * 0.02562 * 12 10 8 14 14 Si 1.86805 * 120.00083 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47321 * 89.99892 * 14 12 10 16 16 H 1.48499 * 109.47226 * 210.00030 * 14 12 10 17 17 H 1.48497 * 109.46968 * 330.00225 * 14 12 10 18 18 C 1.47065 * 136.05654 * 185.20039 * 6 4 2 19 19 C 1.50699 * 109.47163 * 240.00160 * 2 1 3 20 20 C 1.38222 * 120.01242 * 300.02224 * 19 2 1 21 21 C 1.38217 * 120.02800 * 179.97438 * 20 19 2 22 22 C 1.38271 * 120.05166 * 0.02562 * 21 20 19 23 23 C 1.38180 * 120.02288 * 0.02562 * 22 21 20 24 24 C 1.38440 * 120.01245 * 119.99575 * 19 2 1 25 25 F 1.35092 * 120.02392 * 359.75017 * 24 19 2 26 26 H 1.09000 * 109.47332 * 55.32685 * 1 2 3 27 27 H 1.09001 * 109.47224 * 175.32810 * 1 2 3 28 28 H 1.09001 * 109.47171 * 295.32872 * 1 2 3 29 29 H 1.09003 * 113.46753 * 267.68980 * 7 6 4 30 30 H 1.08999 * 113.47323 * 38.13409 * 7 6 4 31 31 H 0.96703 * 114.00117 * 273.58363 * 9 8 7 32 32 H 0.97002 * 119.99634 * 180.02562 * 13 12 10 33 33 H 1.08993 * 113.47074 * 321.86757 * 18 6 4 34 34 H 1.09007 * 113.46472 * 92.24602 * 18 6 4 35 35 H 1.08003 * 119.98527 * 359.97239 * 20 19 2 36 36 H 1.07996 * 119.97948 * 179.97438 * 21 20 19 37 37 H 1.08000 * 119.98731 * 180.02562 * 22 21 20 38 38 H 1.08003 * 120.01122 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.4086 -1.6440 1.6888 6 7 3.1749 -0.3082 1.8215 7 6 4.1342 0.7906 1.6341 8 6 4.4748 0.6723 3.1287 9 8 3.6333 1.4432 3.9886 10 6 5.9414 0.8184 3.4432 11 1 6.5686 -0.0581 3.5131 12 6 6.4825 2.0708 3.6416 13 7 5.7187 3.1381 3.5570 14 14 8.3006 2.2520 4.0308 15 1 9.0658 2.3942 2.7661 16 1 8.5088 3.4568 4.8735 17 1 8.7725 1.0488 4.7621 18 6 4.0145 -0.7789 2.9334 19 6 2.0324 -0.7104 -1.2305 20 6 1.6982 -2.0335 -1.4497 21 6 2.1583 -2.6852 -2.5784 22 6 2.9537 -2.0147 -3.4893 23 6 3.2900 -0.6922 -3.2716 24 6 2.8282 -0.0378 -2.1419 25 9 3.1508 1.2571 -1.9315 26 1 -0.3634 0.5846 -0.8451 27 1 -0.3634 -1.0243 -0.0837 28 1 -0.3633 0.4396 0.9289 29 1 4.9657 0.5337 0.9778 30 1 3.6635 1.7372 1.3682 31 1 3.9260 2.3569 4.1096 32 1 6.0995 4.0193 3.6962 33 1 3.4419 -1.1696 3.7745 34 1 4.8138 -1.4504 2.6197 35 1 1.0774 -2.5584 -0.7388 36 1 1.8971 -3.7192 -2.7488 37 1 3.3124 -2.5248 -4.3711 38 1 3.9109 -0.1685 -3.9834 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193983244.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:56 Heat of formation + Delta-G solvation = -88.656396 kcal Electronic energy + Delta-G solvation = -23831.401911 eV Core-core repulsion = 20167.796643 eV Total energy + Delta-G solvation = -3663.605269 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.97224 -41.57528 -40.21054 -39.03424 -35.93999 -35.20933 -34.15409 -31.55180 -30.71153 -30.30622 -27.51394 -26.91400 -25.36750 -23.76616 -23.03720 -21.55399 -19.90079 -19.29335 -18.69970 -18.21106 -17.42968 -17.28207 -16.94449 -16.77671 -16.41537 -16.07694 -15.90791 -15.18223 -15.09910 -14.71896 -14.57128 -14.31549 -14.13412 -13.85798 -13.52423 -13.44631 -13.19887 -13.06517 -12.94341 -12.77659 -12.76916 -12.27269 -12.25323 -12.15644 -11.97271 -11.38399 -11.00197 -10.69118 -10.29739 -9.95270 -9.68228 -9.62691 -8.29762 -6.47486 0.08936 0.20399 1.46024 1.48631 1.51876 1.58929 1.89741 2.39170 2.59020 2.91937 3.22693 3.39115 3.46958 3.69258 3.74512 3.95341 4.05460 4.12517 4.17652 4.35294 4.38773 4.41056 4.56207 4.65946 4.71930 4.77416 4.84573 4.87817 4.91611 5.04871 5.08589 5.18015 5.20374 5.36202 5.43012 5.70066 5.87016 5.90101 6.58637 6.79136 7.05376 7.26651 7.44682 8.76832 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.018851 B = 0.004799 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.953298 B = 5832.809579 C = 6445.967482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.063 4.063 3 H 0.088 0.912 4 C 0.541 3.459 5 O -0.583 6.583 6 N -0.636 5.636 7 C 0.089 3.911 8 C 0.222 3.778 9 O -0.585 6.585 10 C -0.553 4.553 11 H 0.076 0.924 12 C 0.031 3.969 13 N -0.919 5.919 14 Si 0.973 3.027 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.268 1.268 18 C 0.107 3.893 19 C -0.123 4.123 20 C -0.092 4.092 21 C -0.123 4.123 22 C -0.081 4.081 23 C -0.154 4.154 24 C 0.082 3.918 25 F -0.149 7.149 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.389 0.611 32 H 0.277 0.723 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.128 0.872 36 H 0.160 0.840 37 H 0.172 0.828 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.949 -6.503 -15.005 16.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.084 4.084 3 H 0.106 0.894 4 C 0.332 3.668 5 O -0.464 6.464 6 N -0.369 5.369 7 C -0.034 4.034 8 C 0.180 3.820 9 O -0.398 6.398 10 C -0.591 4.591 11 H 0.094 0.906 12 C -0.169 4.169 13 N -0.560 5.560 14 Si 0.797 3.203 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.192 1.192 18 C -0.015 4.015 19 C -0.125 4.125 20 C -0.110 4.110 21 C -0.141 4.141 22 C -0.099 4.099 23 C -0.172 4.172 24 C 0.063 3.937 25 F -0.127 7.127 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.245 0.755 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.146 0.854 36 H 0.177 0.823 37 H 0.189 0.811 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.796 -7.344 -14.800 17.204 hybrid contribution 1.112 1.339 0.627 1.850 sum -3.684 -6.005 -14.173 15.828 Atomic orbital electron populations 1.21640 0.89830 1.03624 1.02834 1.20082 0.99482 0.99373 0.89491 0.89396 1.20429 0.79039 0.83158 0.84179 1.90583 1.57673 1.31732 1.66454 1.49833 1.21738 1.31017 1.34281 1.24008 0.89149 0.88177 1.02084 1.19843 0.88848 0.87511 0.85790 1.86026 1.54789 1.30057 1.68962 1.21655 0.93122 0.94056 1.50260 0.90573 1.25812 1.03175 0.94990 0.92919 1.69332 1.37887 0.99184 1.49568 0.85321 0.78738 0.77818 0.78379 1.19666 1.20753 1.19213 1.23321 0.91922 0.98366 0.87891 1.19496 1.01353 0.96192 0.95422 1.21138 0.99088 0.92427 0.98338 1.21572 0.97652 1.01644 0.93248 1.21487 0.95670 0.92710 1.00041 1.21466 1.02403 0.96793 0.96545 1.17892 0.99556 0.79026 0.97252 1.91470 1.91234 1.34993 1.95029 0.89520 0.91070 0.92585 0.89568 0.92634 0.75453 0.91286 0.92572 0.87863 0.85374 0.82273 0.81091 0.82537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.48 8.64 71.98 0.62 -2.85 16 2 C -0.06 -2.14 2.80 -12.29 -0.03 -2.18 16 3 H 0.09 3.14 6.64 -2.39 -0.02 3.12 16 4 C 0.54 22.69 6.73 87.66 0.59 23.28 16 5 O -0.58 -26.70 16.67 -3.02 -0.05 -26.75 16 6 N -0.64 -28.25 3.69 -858.20 -3.16 -31.41 16 7 C 0.09 4.03 7.63 83.27 0.63 4.67 16 8 C 0.22 10.99 1.58 -11.12 -0.02 10.98 16 9 O -0.59 -31.58 13.55 -148.98 -2.02 -33.60 16 10 C -0.55 -27.96 8.70 25.60 0.22 -27.74 16 11 H 0.08 3.70 7.81 -2.91 -0.02 3.67 16 12 C 0.03 1.56 5.39 84.65 0.46 2.02 16 13 N -0.92 -47.20 11.01 21.45 0.24 -46.97 16 14 Si 0.97 39.49 29.54 68.60 2.03 41.51 16 15 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 16 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 17 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 18 C 0.11 4.86 8.02 83.18 0.67 5.53 16 19 C -0.12 -3.68 4.78 -19.82 -0.09 -3.77 16 20 C -0.09 -2.38 8.76 22.26 0.19 -2.18 16 21 C -0.12 -2.30 10.04 22.27 0.22 -2.08 16 22 C -0.08 -1.33 10.04 22.26 0.22 -1.10 16 23 C -0.15 -3.20 10.03 22.31 0.22 -2.97 16 24 C 0.08 2.31 7.25 22.38 0.16 2.47 16 25 F -0.15 -4.73 16.19 44.97 0.73 -4.00 16 26 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.07 1.97 7.10 -2.39 -0.02 1.95 16 28 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.09 3.75 8.10 -2.39 -0.02 3.73 16 30 H 0.06 2.58 7.98 -2.39 -0.02 2.56 16 31 H 0.39 21.22 6.32 -74.06 -0.47 20.75 16 32 H 0.28 13.43 8.31 -92.71 -0.77 12.66 16 33 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.10 4.21 8.10 -2.38 -0.02 4.20 16 35 H 0.13 3.52 7.12 -2.91 -0.02 3.50 16 36 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 37 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 38 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -61.97 328.45 2.45 -59.51 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: 0.62 Total: 37.64 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 4.08 Total: 4.07 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -2.93 Total: -78.38 kcal Atomic # 8 Polarization: -58.28 SS G_CDS: -2.07 Total: -60.35 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.73 Total: -4.00 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.51 kcal Total: -61.97 2.45 -59.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193983244.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.143 kcal (2) G-P(sol) polarization free energy of solvation -61.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds