Wall clock time and date at job start Tue Mar 31 2020 07:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.50706 * 109.46812 * 119.99589 * 2 1 3 5 5 H 1.07998 * 119.99769 * 120.00769 * 4 2 1 6 6 C 1.37877 * 120.00286 * 299.99911 * 4 2 1 7 7 N 1.31511 * 120.00035 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99998 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.46865 * 89.99417 * 8 6 4 10 10 H 1.48498 * 109.47233 * 209.99802 * 8 6 4 11 11 H 1.48508 * 109.47028 * 329.99943 * 8 6 4 12 12 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 13 13 C 1.34777 * 119.99665 * 85.27876 * 12 2 1 14 14 O 1.21633 * 120.00238 * 359.72097 * 13 12 2 15 15 C 1.47191 * 119.99772 * 179.72411 * 13 12 2 16 16 C 1.35622 * 123.19029 * 0.02562 * 15 13 12 17 17 S 1.70267 * 110.84577 * 179.97438 * 16 15 13 18 18 C 1.75599 * 92.62375 * 0.02562 * 17 16 15 19 19 C 1.34008 * 110.59571 * 359.70861 * 18 17 16 20 20 C 1.52024 * 123.45233 * 179.61210 * 19 18 17 21 21 C 1.53044 * 108.69129 * 17.67295 * 20 19 18 22 22 C 1.53162 * 109.20733 * 309.11503 * 21 20 19 23 23 H 1.09003 * 109.54001 * 310.50735 * 22 21 20 24 24 C 1.52994 * 109.61462 * 190.29164 * 22 21 20 25 25 C 1.51606 * 125.04345 * 179.97438 * 18 17 16 26 26 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 27 27 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 28 28 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 29 29 H 0.97000 * 120.00229 * 179.97438 * 7 6 4 30 30 H 0.97001 * 119.99790 * 264.99588 * 12 2 1 31 31 H 1.08007 * 124.57558 * 359.96685 * 16 15 13 32 32 H 1.08999 * 109.81647 * 257.79640 * 20 19 18 33 33 H 1.08998 * 109.55016 * 137.38919 * 20 19 18 34 34 H 1.09000 * 109.51835 * 189.19726 * 21 20 19 35 35 H 1.08996 * 109.56056 * 69.05772 * 21 20 19 36 36 H 1.08997 * 109.47276 * 300.38650 * 24 22 21 37 37 H 1.08999 * 109.47669 * 60.38779 * 24 22 21 38 38 H 1.09003 * 109.47205 * 180.38692 * 24 22 21 39 39 H 1.08996 * 109.59843 * 316.42640 * 25 18 17 40 40 H 1.08997 * 109.59852 * 76.88785 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6247 1.2792 2.6542 9 1 -0.8029 0.8727 2.6997 10 1 0.9758 1.9953 3.9068 11 1 0.8470 2.1766 1.4920 12 7 2.0184 -0.6906 -1.1961 13 6 2.1524 -0.0169 -2.3557 14 8 1.8631 1.1632 -2.4104 15 6 2.6489 -0.7093 -3.5559 16 6 2.9894 -2.0220 -3.5682 17 16 3.5209 -2.4956 -5.1150 18 6 3.2838 -0.8868 -5.7775 19 6 2.8145 -0.0545 -4.8380 20 6 2.5130 1.4134 -5.0937 21 6 2.4024 1.6356 -6.6039 22 6 3.6345 1.0408 -7.2923 23 1 4.5368 1.3898 -6.7900 24 6 3.6640 1.4764 -8.7586 25 6 3.5623 -0.4869 -7.2131 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.9031 -0.5278 4.4376 30 1 2.2491 -1.6318 -1.1525 31 1 2.9315 -2.6783 -2.7124 32 1 3.3160 2.0311 -4.6913 33 1 1.5711 1.6811 -4.6150 34 1 2.3495 2.7042 -6.8118 35 1 1.5038 1.1466 -6.9798 36 1 2.7599 1.1295 -9.2589 37 1 3.7152 2.5638 -8.8137 38 1 4.5379 1.0463 -9.2479 39 1 4.5119 -0.9148 -7.5343 40 1 2.7597 -0.8488 -7.8557 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194649930.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:30 Heat of formation + Delta-G solvation = -27.902030 kcal Electronic energy + Delta-G solvation = -21176.235977 eV Core-core repulsion = 18081.478391 eV Total energy + Delta-G solvation = -3094.757585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.76785 -38.39689 -35.55048 -34.92181 -32.46265 -31.23851 -30.69799 -29.47018 -26.25715 -25.23919 -24.59469 -22.87678 -21.58697 -20.54749 -19.41269 -18.25454 -17.58130 -16.90936 -16.03394 -15.38871 -15.05294 -14.51574 -14.32915 -14.19773 -13.91520 -13.67095 -13.33611 -12.96045 -12.92066 -12.82545 -12.44611 -12.22297 -12.18842 -11.85885 -11.74230 -11.41989 -11.36368 -11.22632 -10.84666 -10.81100 -10.63023 -10.31146 -10.18794 -9.69405 -9.23717 -9.12913 -8.76187 -8.57258 -8.31680 -8.05705 -6.21405 -4.24060 0.89630 1.56138 1.98494 2.16390 3.23480 3.35431 3.40230 3.86564 3.96162 4.31575 4.50563 4.63281 4.65875 4.84349 5.07825 5.13593 5.23388 5.34465 5.40155 5.44275 5.52088 5.52812 5.56519 5.65267 5.84392 5.92569 5.95956 6.07095 6.14721 6.26660 6.31664 6.32218 6.38425 6.55960 6.66576 6.86701 7.20050 7.28866 7.51550 8.15581 8.52072 8.75310 8.93239 9.39379 10.90806 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.026836 B = 0.003870 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.131675 B = 7232.770089 C = 8012.752942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.238 3.762 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.079 0.921 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.695 5.695 13 C 0.563 3.437 14 O -0.548 6.548 15 C -0.137 4.137 16 C -0.214 4.214 17 S 0.162 5.838 18 C -0.213 4.213 19 C -0.049 4.049 20 C -0.053 4.053 21 C -0.116 4.116 22 C -0.090 4.090 23 H 0.075 0.925 24 C -0.146 4.146 25 C -0.035 4.035 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.052 0.948 29 H 0.267 0.733 30 H 0.393 0.607 31 H 0.171 0.829 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.454 -0.771 -22.950 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.134 3.866 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.097 0.903 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.186 1.186 12 N -0.343 5.343 13 C 0.347 3.653 14 O -0.428 6.428 15 C -0.155 4.155 16 C -0.352 4.352 17 S 0.431 5.569 18 C -0.330 4.330 19 C -0.061 4.061 20 C -0.092 4.092 21 C -0.154 4.154 22 C -0.110 4.110 23 H 0.093 0.907 24 C -0.203 4.203 25 C -0.074 4.074 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.227 0.773 31 H 0.188 0.812 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.760 -1.364 -23.319 23.521 hybrid contribution -0.988 1.314 1.251 2.066 sum 1.773 -0.049 -22.068 22.139 Atomic orbital electron populations 1.22447 0.99238 1.00863 0.99348 1.19115 0.90161 0.94719 0.82577 0.93207 1.21039 1.33307 1.14456 0.88568 0.90262 1.24827 0.95482 0.96727 0.95480 1.69866 1.44929 1.40109 0.98049 0.86867 0.80514 0.83595 0.77478 1.20284 1.22129 1.18590 1.46093 1.64809 1.13647 1.09716 1.17634 0.78458 0.86529 0.82672 1.90708 1.51776 1.15439 1.84920 1.20390 1.06472 0.93157 0.95467 1.25443 1.06565 0.99608 1.03578 1.82717 1.63662 1.10280 1.00251 1.24604 1.11140 0.96751 1.00469 1.20419 0.98635 0.96971 0.90026 1.20518 1.03820 0.89808 0.95088 1.21699 0.97688 1.00825 0.95152 1.21193 0.99428 0.94103 0.96267 0.90667 1.21822 1.01721 1.01345 0.95429 1.20320 1.01756 0.95931 0.89443 0.93406 0.94471 0.92854 0.92267 0.77348 0.81158 0.90281 0.88935 0.91320 0.91800 0.92605 0.92402 0.92679 0.90736 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 8.97 37.16 0.33 -3.33 16 2 C 0.24 5.78 2.15 -69.08 -0.15 5.63 16 3 H 0.05 1.33 6.63 -51.93 -0.34 0.98 16 4 C -0.54 -14.65 9.31 -34.44 -0.32 -14.97 16 5 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 6 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 7 N -0.89 -26.59 13.96 55.43 0.77 -25.81 16 8 Si 0.89 21.92 24.37 -169.99 -4.14 17.78 16 9 H -0.28 -6.60 6.87 56.52 0.39 -6.22 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 11 H -0.26 -6.42 6.53 56.52 0.37 -6.06 16 12 N -0.69 -14.40 5.04 -56.08 -0.28 -14.68 16 13 C 0.56 11.34 7.76 -12.62 -0.10 11.24 16 14 O -0.55 -12.48 14.27 5.25 0.07 -12.41 16 15 C -0.14 -2.25 5.97 -104.56 -0.62 -2.88 16 16 C -0.21 -2.93 10.35 29.80 0.31 -2.62 16 17 S 0.16 1.80 22.99 -107.50 -2.47 -0.67 16 18 C -0.21 -2.59 6.32 -35.35 -0.22 -2.81 16 19 C -0.05 -0.72 5.95 -102.82 -0.61 -1.34 16 20 C -0.05 -0.74 5.07 -27.21 -0.14 -0.88 16 21 C -0.12 -1.20 5.21 -26.62 -0.14 -1.34 16 22 C -0.09 -0.81 2.71 -90.47 -0.25 -1.05 16 23 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 24 C -0.15 -1.01 9.18 37.15 0.34 -0.67 16 25 C -0.04 -0.32 5.56 -27.37 -0.15 -0.48 16 26 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.39 7.21 7.00 -40.82 -0.29 6.92 16 31 H 0.17 2.06 6.97 -52.48 -0.37 1.70 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.47 6.94 -51.93 -0.36 1.11 16 34 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 35 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 LS Contribution 327.63 15.07 4.94 4.94 Total: -1.00 -31.23 327.63 -8.70 -39.92 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.77 Total: 4.30 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -1.82 Total: -13.37 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.49 Total: -40.50 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.07 Total: -12.41 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.14 Total: 17.78 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.47 Total: -0.67 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.23 -8.70 -39.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194649930.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.022 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds