Wall clock time and date at job start Tue Mar 31 2020 07:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.50706 * 109.46812 * 119.99589 * 2 1 3 5 5 H 1.07998 * 119.99769 * 120.00769 * 4 2 1 6 6 C 1.37877 * 120.00286 * 299.99911 * 4 2 1 7 7 N 1.31511 * 120.00035 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 119.99998 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.46865 * 89.99417 * 8 6 4 10 10 H 1.48498 * 109.47233 * 209.99802 * 8 6 4 11 11 H 1.48508 * 109.47028 * 329.99943 * 8 6 4 12 12 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 13 13 C 1.34777 * 119.99665 * 85.27876 * 12 2 1 14 14 O 1.21633 * 120.00238 * 359.72097 * 13 12 2 15 15 C 1.47191 * 119.99772 * 179.72411 * 13 12 2 16 16 C 1.35622 * 123.19029 * 0.02562 * 15 13 12 17 17 S 1.70267 * 110.84577 * 179.97438 * 16 15 13 18 18 C 1.75599 * 92.62375 * 0.02562 * 17 16 15 19 19 C 1.34008 * 110.59571 * 359.70861 * 18 17 16 20 20 C 1.52024 * 123.45233 * 179.61210 * 19 18 17 21 21 C 1.53044 * 108.69129 * 17.67295 * 20 19 18 22 22 C 1.53162 * 109.20733 * 309.11503 * 21 20 19 23 23 H 1.09003 * 109.54001 * 310.50735 * 22 21 20 24 24 C 1.52994 * 109.61462 * 190.29164 * 22 21 20 25 25 C 1.51606 * 125.04345 * 179.97438 * 18 17 16 26 26 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 27 27 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 28 28 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 29 29 H 0.97000 * 120.00229 * 179.97438 * 7 6 4 30 30 H 0.97001 * 119.99790 * 264.99588 * 12 2 1 31 31 H 1.08007 * 124.57558 * 359.96685 * 16 15 13 32 32 H 1.08999 * 109.81647 * 257.79640 * 20 19 18 33 33 H 1.08998 * 109.55016 * 137.38919 * 20 19 18 34 34 H 1.09000 * 109.51835 * 189.19726 * 21 20 19 35 35 H 1.08996 * 109.56056 * 69.05772 * 21 20 19 36 36 H 1.08997 * 109.47276 * 300.38650 * 24 22 21 37 37 H 1.08999 * 109.47669 * 60.38779 * 24 22 21 38 38 H 1.09003 * 109.47205 * 180.38692 * 24 22 21 39 39 H 1.08996 * 109.59843 * 316.42640 * 25 18 17 40 40 H 1.08997 * 109.59852 * 76.88785 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1371 -0.8595 3.5566 8 14 0.6247 1.2792 2.6542 9 1 -0.8029 0.8727 2.6997 10 1 0.9758 1.9953 3.9068 11 1 0.8470 2.1766 1.4920 12 7 2.0184 -0.6906 -1.1961 13 6 2.1524 -0.0169 -2.3557 14 8 1.8631 1.1632 -2.4104 15 6 2.6489 -0.7093 -3.5559 16 6 2.9894 -2.0220 -3.5682 17 16 3.5209 -2.4956 -5.1150 18 6 3.2838 -0.8868 -5.7775 19 6 2.8145 -0.0545 -4.8380 20 6 2.5130 1.4134 -5.0937 21 6 2.4024 1.6356 -6.6039 22 6 3.6345 1.0408 -7.2923 23 1 4.5368 1.3898 -6.7900 24 6 3.6640 1.4764 -8.7586 25 6 3.5623 -0.4869 -7.2131 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.9031 -0.5278 4.4376 30 1 2.2491 -1.6318 -1.1525 31 1 2.9315 -2.6783 -2.7124 32 1 3.3160 2.0311 -4.6913 33 1 1.5711 1.6811 -4.6150 34 1 2.3495 2.7042 -6.8118 35 1 1.5038 1.1466 -6.9798 36 1 2.7599 1.1295 -9.2589 37 1 3.7152 2.5638 -8.8137 38 1 4.5379 1.0463 -9.2479 39 1 4.5119 -0.9148 -7.5343 40 1 2.7597 -0.8488 -7.8557 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194649930.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:29 Heat of formation + Delta-G solvation = -47.324620 kcal Electronic energy + Delta-G solvation = -21177.078204 eV Core-core repulsion = 18081.478391 eV Total energy + Delta-G solvation = -3095.599812 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.09414 -39.59267 -36.91306 -36.44672 -34.44957 -32.42844 -31.82877 -30.85990 -27.28152 -27.04529 -25.92096 -23.90098 -22.92506 -21.83617 -20.94686 -19.37188 -18.93729 -18.34128 -17.69370 -17.18780 -16.24371 -15.99785 -15.57470 -15.18168 -15.09168 -14.93154 -14.74147 -14.49206 -14.19277 -14.14344 -13.83720 -13.61934 -13.26908 -13.22148 -12.89623 -12.81417 -12.68711 -12.32142 -12.25506 -12.17279 -11.67742 -11.59392 -11.44015 -11.32744 -11.15164 -10.90252 -10.70315 -9.98432 -9.56111 -9.20428 -8.41336 -6.47780 -0.21152 0.58797 0.94524 0.97446 1.25321 1.33509 1.43458 2.23796 2.37964 2.41741 2.94856 3.59351 3.83335 3.90901 3.99149 4.05906 4.21300 4.33542 4.42679 4.52953 4.57354 4.62484 4.65469 4.67087 4.72493 4.84917 4.86970 4.95276 5.04945 5.07943 5.15423 5.22886 5.26136 5.28625 5.38528 5.44451 5.55194 5.58298 5.63807 6.10536 6.52577 6.80798 7.15125 7.36933 8.73958 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.026836 B = 0.003870 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.131675 B = 7232.770089 C = 8012.752942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.244 3.756 3 H 0.023 0.977 4 C -0.536 4.536 5 H 0.056 0.944 6 C 0.031 3.969 7 N -0.932 5.932 8 Si 0.939 3.061 9 H -0.258 1.258 10 H -0.290 1.290 11 H -0.264 1.264 12 N -0.696 5.696 13 C 0.561 3.439 14 O -0.583 6.583 15 C -0.172 4.172 16 C -0.219 4.219 17 S 0.246 5.754 18 C -0.209 4.209 19 C -0.080 4.080 20 C -0.052 4.052 21 C -0.110 4.110 22 C -0.087 4.087 23 H 0.066 0.934 24 C -0.140 4.140 25 C -0.037 4.037 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.064 0.936 29 H 0.271 0.729 30 H 0.403 0.597 31 H 0.182 0.818 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 -1.682 -25.859 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.139 3.861 3 H 0.041 0.959 4 C -0.574 4.574 5 H 0.074 0.926 6 C -0.169 4.169 7 N -0.571 5.571 8 Si 0.766 3.234 9 H -0.183 1.183 10 H -0.217 1.217 11 H -0.188 1.188 12 N -0.345 5.345 13 C 0.348 3.652 14 O -0.466 6.466 15 C -0.190 4.190 16 C -0.357 4.357 17 S 0.516 5.484 18 C -0.326 4.326 19 C -0.090 4.090 20 C -0.091 4.091 21 C -0.147 4.147 22 C -0.107 4.107 23 H 0.084 0.916 24 C -0.198 4.198 25 C -0.076 4.076 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.239 0.761 31 H 0.199 0.801 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.790 -2.302 -26.256 26.504 hybrid contribution -0.885 1.471 2.080 2.697 sum 1.904 -0.831 -24.176 24.265 Atomic orbital electron populations 1.22335 0.97698 1.01691 0.99493 1.18778 0.91285 0.93164 0.82867 0.95885 1.21233 1.32578 1.13683 0.89932 0.92596 1.25547 0.96781 0.99368 0.95234 1.69967 1.46572 1.41877 0.98676 0.85998 0.79839 0.80269 0.77274 1.18329 1.21697 1.18834 1.45917 1.65349 1.14112 1.09137 1.18198 0.77465 0.86235 0.83339 1.90678 1.53242 1.17056 1.85580 1.20168 1.09770 0.94391 0.94686 1.25749 1.05187 0.98811 1.05997 1.82455 1.60751 1.08224 0.97006 1.25096 1.08806 0.97177 1.01490 1.20463 1.00893 0.97570 0.90087 1.20416 1.01498 0.89759 0.97424 1.21665 0.98795 1.01684 0.92550 1.21169 0.98011 0.94069 0.97475 0.91582 1.21778 1.02706 1.01604 0.93691 1.20521 1.03476 0.96039 0.87547 0.93807 0.93673 0.91666 0.91930 0.76107 0.80108 0.92047 0.92018 0.90481 0.91426 0.91834 0.92222 0.91417 0.88587 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.96 8.97 71.98 0.65 -6.32 16 2 C 0.24 12.07 2.15 44.25 0.10 12.17 16 3 H 0.02 1.28 6.63 -2.39 -0.02 1.26 16 4 C -0.54 -29.99 9.31 25.60 0.24 -29.75 16 5 H 0.06 3.31 7.98 -2.91 -0.02 3.29 16 6 C 0.03 1.76 5.45 84.66 0.46 2.22 16 7 N -0.93 -56.43 13.96 21.45 0.30 -56.13 16 8 Si 0.94 45.41 24.37 68.60 1.67 47.08 16 9 H -0.26 -11.65 6.87 99.48 0.68 -10.97 16 10 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 11 H -0.26 -12.77 6.53 99.48 0.65 -12.12 16 12 N -0.70 -29.53 5.04 -449.59 -2.26 -31.79 16 13 C 0.56 23.32 7.76 86.60 0.67 24.00 16 14 O -0.58 -27.84 14.27 -4.14 -0.06 -27.89 16 15 C -0.17 -5.68 5.97 -19.82 -0.12 -5.79 16 16 C -0.22 -5.68 10.35 67.21 0.70 -4.98 16 17 S 0.25 4.65 22.99 -56.49 -1.30 3.35 16 18 C -0.21 -4.56 6.32 25.01 0.16 -4.40 16 19 C -0.08 -2.32 5.95 -18.70 -0.11 -2.43 16 20 C -0.05 -1.48 5.07 30.29 0.15 -1.33 16 21 C -0.11 -2.16 5.21 30.66 0.16 -2.00 16 22 C -0.09 -1.36 2.71 -10.69 -0.03 -1.39 16 23 H 0.07 1.16 8.11 -2.39 -0.02 1.14 16 24 C -0.14 -1.49 9.18 71.98 0.66 -0.83 16 25 C -0.04 -0.55 5.56 30.18 0.17 -0.38 16 26 H 0.04 2.00 3.27 -2.39 -0.01 1.99 16 27 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 30 H 0.40 15.05 7.00 -92.71 -0.65 14.40 16 31 H 0.18 4.14 6.97 -2.91 -0.02 4.11 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 2.11 6.94 -2.39 -0.02 2.09 16 34 H 0.08 1.36 8.12 -2.39 -0.02 1.34 16 35 H 0.07 1.28 8.10 -2.39 -0.02 1.26 16 36 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.10 1.15 8.12 -2.39 -0.02 1.13 16 Total: -1.00 -69.31 327.63 2.52 -66.79 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.32 Total: 19.81 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 3.85 Total: -21.23 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -1.96 Total: -87.92 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.06 Total: -27.89 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.67 Total: 47.08 kcal Atomic # 16 Polarization: 4.65 SS G_CDS: -1.30 Total: 3.35 kcal Total: -69.31 2.52 -66.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194649930.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.464 kcal (2) G-P(sol) polarization free energy of solvation -69.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds