Wall clock time and date at job start Tue Mar 31 2020 07:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46491 * 109.47268 * 120.00149 * 2 1 3 13 13 C 1.34780 * 120.00170 * 275.00492 * 12 2 1 14 14 O 1.21639 * 119.99741 * 359.97438 * 13 12 2 15 15 C 1.47185 * 120.00090 * 180.02562 * 13 12 2 16 16 C 1.35630 * 123.19292 * 359.69631 * 15 13 12 17 17 S 1.70267 * 110.84399 * 179.89118 * 16 15 13 18 18 C 1.75594 * 92.62558 * 0.31673 * 17 16 15 19 19 C 1.34006 * 110.60130 * 359.82967 * 18 17 16 20 20 C 1.52013 * 123.46223 * 179.97438 * 19 18 17 21 21 C 1.53036 * 108.76721 * 17.09742 * 20 19 18 22 22 C 1.53165 * 109.22086 * 309.38805 * 21 20 19 23 23 H 1.09002 * 109.53937 * 310.49261 * 22 21 20 24 24 C 1.52999 * 109.61222 * 190.27433 * 22 21 20 25 25 C 1.51610 * 125.04398 * 179.81144 * 18 17 16 26 26 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 27 27 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 28 28 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 29 29 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 30 30 H 0.97002 * 120.00109 * 94.99223 * 12 2 1 31 31 H 1.08003 * 124.57043 * 0.02562 * 16 15 13 32 32 H 1.08991 * 109.59578 * 136.90906 * 20 19 18 33 33 H 1.09003 * 109.58609 * 257.33840 * 20 19 18 34 34 H 1.09007 * 109.51774 * 189.46362 * 21 20 19 35 35 H 1.08998 * 109.54634 * 69.33169 * 21 20 19 36 36 H 1.09002 * 109.47106 * 300.39105 * 24 22 21 37 37 H 1.09004 * 109.47140 * 60.39157 * 24 22 21 38 38 H 1.09000 * 109.46699 * 180.39257 * 24 22 21 39 39 H 1.08993 * 109.59693 * 316.44705 * 25 18 17 40 40 H 1.09001 * 109.59522 * 76.91516 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0183 2.3571 14 8 1.8580 1.1620 2.4117 15 6 2.6382 -0.7121 3.5587 16 6 2.9739 -2.0261 3.5723 17 16 3.5036 -2.5000 5.1196 18 6 3.2627 -0.8922 5.7831 19 6 2.8030 -0.0574 4.8410 20 6 2.4926 1.4082 5.0990 21 6 3.1747 1.8342 6.4010 22 6 2.8238 0.8324 7.5052 23 1 1.7458 0.6724 7.5232 24 6 3.2827 1.3785 8.8588 25 6 3.5338 -0.4941 7.2206 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7011 1.1560 -3.4844 30 1 2.2489 -1.6318 1.1525 31 1 2.9153 -2.6825 2.7167 32 1 2.8695 2.0124 4.2739 33 1 1.4147 1.5428 5.1905 34 1 2.8270 2.8271 6.6863 35 1 4.2550 1.8539 6.2572 36 1 4.3604 1.5411 8.8385 37 1 2.7766 2.3227 9.0602 38 1 3.0382 0.6608 9.6419 39 1 3.1527 -1.2641 7.8913 40 1 4.6067 -0.3738 7.3705 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194649954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:37 Heat of formation + Delta-G solvation = -36.143959 kcal Electronic energy + Delta-G solvation = -21102.576615 eV Core-core repulsion = 18007.461633 eV Total energy + Delta-G solvation = -3095.114982 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.65404 -38.25389 -35.44426 -34.72255 -32.45579 -31.10246 -30.51338 -28.71422 -26.19075 -25.26676 -24.47199 -22.80241 -21.49689 -20.48692 -19.21924 -18.17884 -17.55368 -16.73045 -15.75399 -15.23686 -14.87394 -14.42325 -14.26162 -14.11074 -13.84820 -13.65346 -13.23936 -12.90944 -12.76148 -12.42100 -12.30646 -12.19677 -11.79241 -11.65799 -11.34602 -11.30014 -11.09022 -10.95566 -10.79937 -10.71824 -10.57462 -10.32121 -10.25113 -10.23024 -9.06163 -9.00256 -8.55002 -8.50651 -8.21442 -7.84563 -6.12398 -4.21820 0.96255 1.61780 2.03944 2.25191 3.25335 3.30533 3.31748 4.01837 4.10072 4.37941 4.57341 4.67918 4.70938 4.89959 5.13534 5.19801 5.28747 5.38521 5.45076 5.49938 5.57713 5.58453 5.68438 5.70680 5.89064 5.98494 6.01548 6.12665 6.23075 6.32770 6.38096 6.73079 6.84640 6.98073 7.15610 7.46237 7.56935 7.69917 7.92154 8.15085 8.66717 8.78188 9.12649 9.45682 10.93558 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.028072 B = 0.003627 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.178634 B = 7717.192762 C = 8406.554589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.266 3.734 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.702 5.702 13 C 0.559 3.441 14 O -0.547 6.547 15 C -0.134 4.134 16 C -0.217 4.217 17 S 0.155 5.845 18 C -0.213 4.213 19 C -0.049 4.049 20 C -0.053 4.053 21 C -0.116 4.116 22 C -0.090 4.090 23 H 0.074 0.926 24 C -0.146 4.146 25 C -0.035 4.035 26 H 0.015 0.985 27 H 0.091 0.909 28 H 0.026 0.974 29 H 0.265 0.735 30 H 0.386 0.614 31 H 0.169 0.831 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.961 -4.296 19.976 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.349 5.349 13 C 0.343 3.657 14 O -0.427 6.427 15 C -0.152 4.152 16 C -0.354 4.354 17 S 0.424 5.576 18 C -0.330 4.330 19 C -0.060 4.060 20 C -0.092 4.092 21 C -0.154 4.154 22 C -0.110 4.110 23 H 0.093 0.907 24 C -0.203 4.203 25 C -0.074 4.074 26 H 0.034 0.966 27 H 0.109 0.891 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.219 0.781 31 H 0.187 0.813 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.174 -4.741 20.389 21.563 hybrid contribution -0.138 0.129 -1.807 1.817 sum 5.036 -4.611 18.582 19.797 Atomic orbital electron populations 1.22079 0.98395 0.99118 1.00967 1.18753 0.91041 0.94021 0.79761 0.93205 1.21182 1.32489 1.13342 0.90371 0.92193 1.24882 0.94771 0.94967 0.99023 1.69894 1.35711 1.22438 1.24000 0.86504 0.79166 0.79600 0.81803 1.20166 1.21084 1.20158 1.46442 1.64715 1.13399 1.10373 1.17618 0.78756 0.86633 0.82684 1.90714 1.51549 1.15415 1.85009 1.20511 1.05939 0.93097 0.95645 1.25400 1.06911 0.99637 1.03493 1.82664 1.64030 1.10489 1.00438 1.24586 1.11578 0.96575 1.00226 1.20445 0.98721 0.96919 0.89940 1.20519 1.01046 0.90012 0.97648 1.21701 1.00888 0.98436 0.94349 1.21190 1.00512 0.94284 0.94985 0.90711 1.21824 1.01382 1.00919 0.96179 1.20314 1.00805 0.97155 0.89142 0.96569 0.89071 0.95528 0.92493 0.78124 0.81323 0.88786 0.90346 0.91304 0.91788 0.92600 0.92401 0.92723 0.90808 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 2 C 0.27 6.90 2.56 -69.09 -0.18 6.72 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 4 C -0.54 -14.38 8.73 -34.44 -0.30 -14.68 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -25.05 11.31 55.43 0.63 -24.42 16 8 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.70 -15.28 5.04 -56.09 -0.28 -15.56 16 13 C 0.56 11.92 7.75 -12.63 -0.10 11.82 16 14 O -0.55 -13.27 14.27 5.24 0.07 -13.20 16 15 C -0.13 -2.31 5.97 -104.56 -0.62 -2.94 16 16 C -0.22 -3.08 10.35 29.80 0.31 -2.77 16 17 S 0.15 1.80 22.99 -107.50 -2.47 -0.68 16 18 C -0.21 -2.71 6.32 -35.35 -0.22 -2.93 16 19 C -0.05 -0.76 5.95 -102.82 -0.61 -1.37 16 20 C -0.05 -0.78 5.07 -27.21 -0.14 -0.92 16 21 C -0.12 -1.27 5.21 -26.63 -0.14 -1.41 16 22 C -0.09 -0.85 2.71 -90.47 -0.25 -1.09 16 23 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 24 C -0.15 -1.06 9.18 37.16 0.34 -0.72 16 25 C -0.03 -0.34 5.56 -27.37 -0.15 -0.49 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 2.49 6.06 -51.93 -0.31 2.18 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 30 H 0.39 7.32 7.00 -40.82 -0.29 7.04 16 31 H 0.17 2.12 6.97 -52.48 -0.37 1.75 16 32 H 0.09 1.59 6.94 -51.93 -0.36 1.23 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 35 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 LS Contribution 334.43 15.07 5.04 5.04 Total: -1.00 -30.34 334.43 -9.75 -40.09 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.91 Total: 5.43 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -1.81 Total: -12.44 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.34 Total: -39.99 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.07 Total: -13.20 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.47 Total: -0.68 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.34 -9.75 -40.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194649954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.943 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds