Wall clock time and date at job start Tue Mar 31 2020 07:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46491 * 109.47268 * 120.00149 * 2 1 3 13 13 C 1.34780 * 120.00170 * 275.00492 * 12 2 1 14 14 O 1.21639 * 119.99741 * 359.97438 * 13 12 2 15 15 C 1.47185 * 120.00090 * 180.02562 * 13 12 2 16 16 C 1.35630 * 123.19292 * 359.69631 * 15 13 12 17 17 S 1.70267 * 110.84399 * 179.89118 * 16 15 13 18 18 C 1.75594 * 92.62558 * 0.31673 * 17 16 15 19 19 C 1.34006 * 110.60130 * 359.82967 * 18 17 16 20 20 C 1.52013 * 123.46223 * 179.97438 * 19 18 17 21 21 C 1.53036 * 108.76721 * 17.09742 * 20 19 18 22 22 C 1.53165 * 109.22086 * 309.38805 * 21 20 19 23 23 H 1.09002 * 109.53937 * 310.49261 * 22 21 20 24 24 C 1.52999 * 109.61222 * 190.27433 * 22 21 20 25 25 C 1.51610 * 125.04398 * 179.81144 * 18 17 16 26 26 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 27 27 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 28 28 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 29 29 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 30 30 H 0.97002 * 120.00109 * 94.99223 * 12 2 1 31 31 H 1.08003 * 124.57043 * 0.02562 * 16 15 13 32 32 H 1.08991 * 109.59578 * 136.90906 * 20 19 18 33 33 H 1.09003 * 109.58609 * 257.33840 * 20 19 18 34 34 H 1.09007 * 109.51774 * 189.46362 * 21 20 19 35 35 H 1.08998 * 109.54634 * 69.33169 * 21 20 19 36 36 H 1.09002 * 109.47106 * 300.39105 * 24 22 21 37 37 H 1.09004 * 109.47140 * 60.39157 * 24 22 21 38 38 H 1.09000 * 109.46699 * 180.39257 * 24 22 21 39 39 H 1.08993 * 109.59693 * 316.44705 * 25 18 17 40 40 H 1.09001 * 109.59522 * 76.91516 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0183 2.3571 14 8 1.8580 1.1620 2.4117 15 6 2.6382 -0.7121 3.5587 16 6 2.9739 -2.0261 3.5723 17 16 3.5036 -2.5000 5.1196 18 6 3.2627 -0.8922 5.7831 19 6 2.8030 -0.0574 4.8410 20 6 2.4926 1.4082 5.0990 21 6 3.1747 1.8342 6.4010 22 6 2.8238 0.8324 7.5052 23 1 1.7458 0.6724 7.5232 24 6 3.2827 1.3785 8.8588 25 6 3.5338 -0.4941 7.2206 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7011 1.1560 -3.4844 30 1 2.2489 -1.6318 1.1525 31 1 2.9153 -2.6825 2.7167 32 1 2.8695 2.0124 4.2739 33 1 1.4147 1.5428 5.1905 34 1 2.8270 2.8271 6.6863 35 1 4.2550 1.8539 6.2572 36 1 4.3604 1.5411 8.8385 37 1 2.7766 2.3227 9.0602 38 1 3.0382 0.6608 9.6419 39 1 3.1527 -1.2641 7.8913 40 1 4.6067 -0.3738 7.3705 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194649954.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:37 Heat of formation + Delta-G solvation = -53.702665 kcal Electronic energy + Delta-G solvation = -21103.338018 eV Core-core repulsion = 18007.461633 eV Total energy + Delta-G solvation = -3095.876385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.02982 -39.54616 -36.79521 -36.42369 -34.37060 -32.17393 -31.65286 -30.44466 -27.38795 -27.03739 -25.82965 -23.89357 -22.90590 -21.84059 -20.85185 -19.32591 -18.89688 -18.11427 -17.53730 -17.01793 -16.21173 -15.82111 -15.62172 -15.21322 -15.02309 -14.82908 -14.50662 -14.29804 -14.22414 -13.78756 -13.69144 -13.28073 -13.00374 -12.97172 -12.84386 -12.76701 -12.67383 -12.33533 -12.29422 -12.24998 -12.16179 -11.62615 -11.44631 -11.16408 -11.15041 -10.71136 -10.58664 -9.86373 -9.54828 -9.17660 -8.20285 -6.38655 -0.19535 0.60051 0.94532 0.99650 1.42861 1.45460 1.53373 2.32500 2.44483 2.60732 3.09887 3.60270 3.84542 3.90539 3.99605 4.12266 4.21745 4.35841 4.56423 4.62799 4.66790 4.70507 4.72787 4.85265 4.87792 4.87987 5.04503 5.05076 5.07546 5.16072 5.22721 5.25726 5.38566 5.44320 5.54930 5.55873 5.62748 5.66352 5.87337 6.05483 6.67798 6.91555 7.28101 7.48767 8.86131 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.028072 B = 0.003627 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.178634 B = 7717.192762 C = 8406.554589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.273 3.727 3 H -0.001 1.001 4 C -0.551 4.551 5 H 0.073 0.927 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.975 3.025 9 H -0.263 1.263 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.700 5.700 13 C 0.555 3.445 14 O -0.590 6.590 15 C -0.172 4.172 16 C -0.219 4.219 17 S 0.249 5.751 18 C -0.209 4.209 19 C -0.082 4.082 20 C -0.051 4.051 21 C -0.110 4.110 22 C -0.086 4.086 23 H 0.067 0.933 24 C -0.140 4.140 25 C -0.037 4.037 26 H 0.010 0.990 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.267 0.733 30 H 0.401 0.599 31 H 0.184 0.816 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.520 -7.258 21.994 24.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.170 3.830 3 H 0.017 0.983 4 C -0.589 4.589 5 H 0.091 0.909 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.799 3.201 9 H -0.187 1.187 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.349 5.349 13 C 0.341 3.659 14 O -0.473 6.473 15 C -0.191 4.191 16 C -0.357 4.357 17 S 0.519 5.481 18 C -0.326 4.326 19 C -0.092 4.092 20 C -0.091 4.091 21 C -0.147 4.147 22 C -0.106 4.106 23 H 0.085 0.915 24 C -0.197 4.197 25 C -0.075 4.075 26 H 0.029 0.971 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.236 0.764 31 H 0.201 0.799 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.116 0.884 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.747 -7.740 22.442 24.679 hybrid contribution -0.595 1.007 -2.347 2.622 sum 6.152 -6.733 20.095 22.068 Atomic orbital electron populations 1.21897 0.98241 0.99426 0.99592 1.18353 0.91135 0.91912 0.81627 0.98341 1.21504 1.32835 1.13785 0.90798 0.90922 1.25830 0.94742 0.95594 1.02361 1.70050 1.36761 1.23914 1.24787 0.85358 0.78637 0.78727 0.77380 1.18734 1.20987 1.19556 1.46170 1.65122 1.13990 1.09583 1.18290 0.77661 0.86301 0.83605 1.90681 1.53295 1.17461 1.85817 1.20222 1.09677 0.94489 0.94665 1.25739 1.05141 0.98631 1.06167 1.82367 1.60845 1.08043 0.96884 1.25094 1.09040 0.97160 1.01280 1.20464 1.01207 0.97443 0.90120 1.20395 1.00186 0.90072 0.98434 1.21668 1.00492 0.99496 0.93054 1.21163 1.00192 0.93874 0.95417 0.91494 1.21779 1.01786 1.01299 0.94881 1.20523 1.02025 0.97729 0.87270 0.97109 0.91184 0.94149 0.92423 0.76372 0.79899 0.92546 0.92114 0.90526 0.91555 0.91884 0.92245 0.91252 0.88366 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.04 9.26 71.98 0.67 -6.38 16 2 C 0.27 14.85 2.56 44.25 0.11 14.97 16 3 H 0.00 -0.08 7.58 -2.38 -0.02 -0.10 16 4 C -0.55 -30.06 8.73 25.60 0.22 -29.83 16 5 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -53.58 11.31 21.45 0.24 -53.34 16 8 Si 0.97 42.51 29.54 68.60 2.03 44.53 16 9 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 12 N -0.70 -31.62 5.04 -449.60 -2.26 -33.88 16 13 C 0.55 25.01 7.75 86.59 0.67 25.68 16 14 O -0.59 -31.12 14.27 -4.15 -0.06 -31.18 16 15 C -0.17 -6.04 5.97 -19.82 -0.12 -6.16 16 16 C -0.22 -5.84 10.35 67.22 0.70 -5.15 16 17 S 0.25 4.83 22.99 -56.49 -1.30 3.53 16 18 C -0.21 -4.80 6.32 25.01 0.16 -4.65 16 19 C -0.08 -2.54 5.95 -18.70 -0.11 -2.66 16 20 C -0.05 -1.61 5.07 30.28 0.15 -1.46 16 21 C -0.11 -2.38 5.21 30.66 0.16 -2.22 16 22 C -0.09 -1.45 2.71 -10.70 -0.03 -1.47 16 23 H 0.07 1.24 8.11 -2.39 -0.02 1.22 16 24 C -0.14 -1.61 9.18 71.98 0.66 -0.95 16 25 C -0.04 -0.57 5.56 30.18 0.17 -0.41 16 26 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.07 4.01 6.06 -2.39 -0.01 3.99 16 28 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 30 H 0.40 15.31 7.00 -92.71 -0.65 14.66 16 31 H 0.18 4.19 6.97 -2.91 -0.02 4.17 16 32 H 0.06 2.14 6.94 -2.39 -0.02 2.12 16 33 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.08 1.50 8.12 -2.38 -0.02 1.48 16 35 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 36 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 1.24 8.12 -2.39 -0.02 1.22 16 Total: -1.00 -69.93 334.43 2.90 -67.03 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.40 Total: 22.73 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 3.86 Total: -19.42 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -2.02 Total: -87.22 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.06 Total: -31.18 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.30 Total: 3.53 kcal Total: -69.93 2.90 -67.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194649954.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.326 kcal (2) G-P(sol) polarization free energy of solvation -69.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds