Wall clock time and date at job start Tue Mar 31 2020 07:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47102 * 2 1 4 4 C 1.50700 * 109.47126 * 239.99952 * 2 1 3 5 5 H 1.08006 * 119.99591 * 275.00464 * 4 2 1 6 6 C 1.37866 * 120.00142 * 95.00007 * 4 2 1 7 7 N 1.31518 * 120.00114 * 184.91536 * 6 4 2 8 8 Si 1.86798 * 120.00197 * 4.91950 * 6 4 2 9 9 H 1.48501 * 109.47291 * 84.82858 * 8 6 4 10 10 H 1.48504 * 109.47419 * 204.83399 * 8 6 4 11 11 H 1.48505 * 109.46960 * 324.82942 * 8 6 4 12 12 N 1.46498 * 109.47029 * 119.99557 * 2 1 3 13 13 C 1.34775 * 120.00265 * 275.00138 * 12 2 1 14 14 O 1.21694 * 120.00004 * 359.97438 * 13 12 2 15 15 C 1.46582 * 120.00036 * 180.02562 * 13 12 2 16 16 C 1.36114 * 125.45907 * 179.97438 * 15 13 12 17 17 C 1.38277 * 114.10193 * 179.97438 * 16 15 13 18 18 C 1.35234 * 113.92931 * 359.97438 * 17 16 15 19 19 S 1.70754 * 111.10632 * 0.02562 * 18 17 16 20 20 C 1.51713 * 124.33729 * 180.02562 * 18 17 16 21 21 C 1.53094 * 108.75116 * 16.54912 * 20 18 17 22 22 C 1.53209 * 108.96584 * 309.89494 * 21 20 18 23 23 H 1.08995 * 109.54560 * 310.95710 * 22 21 20 24 24 C 1.53001 * 109.54268 * 190.81518 * 22 21 20 25 25 C 1.52330 * 123.07576 * 179.97438 * 17 16 15 26 26 H 1.08994 * 109.47230 * 55.03547 * 1 2 3 27 27 H 1.08997 * 109.47163 * 175.03990 * 1 2 3 28 28 H 1.09001 * 109.46872 * 295.04068 * 1 2 3 29 29 H 0.96996 * 120.00218 * 180.02562 * 7 6 4 30 30 H 0.97004 * 119.99861 * 94.99866 * 12 2 1 31 31 H 1.07998 * 122.94755 * 359.97328 * 16 15 13 32 32 H 1.09001 * 109.59140 * 136.32714 * 20 18 17 33 33 H 1.08998 * 109.59262 * 256.76637 * 20 18 17 34 34 H 1.09000 * 109.55251 * 69.77864 * 21 20 18 35 35 H 1.08997 * 109.54696 * 190.06750 * 21 20 18 36 36 H 1.09002 * 109.47459 * 300.26746 * 24 22 21 37 37 H 1.08999 * 109.46991 * 60.26635 * 24 22 21 38 38 H 1.08998 * 109.47201 * 180.26303 * 24 22 21 39 39 H 1.09000 * 109.58361 * 317.17717 * 25 17 16 40 40 H 1.08999 * 109.58159 * 77.57625 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1354 -1.7856 -1.2290 6 6 2.3603 0.0120 -2.3580 7 7 2.7060 -0.6133 -3.4622 8 14 2.3137 1.8790 -2.3174 9 1 3.5993 2.3947 -1.7822 10 1 2.1059 2.3990 -3.6928 11 1 1.1987 2.3274 -1.4450 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8581 1.1627 2.4117 15 6 2.6362 -0.7090 3.5539 16 6 2.8088 -0.1406 4.7786 17 6 3.2829 -1.0107 5.7431 18 6 3.4884 -2.2693 5.2931 19 16 3.0923 -2.4027 3.6375 20 6 4.0034 -3.4108 6.1494 21 6 3.8491 -3.0285 7.6238 22 6 4.4502 -1.6363 7.8427 23 1 5.4442 -1.5942 7.3978 24 6 4.5492 -1.3517 9.3428 25 6 3.5501 -0.5904 7.1827 26 1 -0.3633 0.5889 -0.8421 27 1 -0.3633 -1.0238 -0.0889 28 1 -0.3633 0.4350 0.9311 29 1 2.9370 -0.1050 -4.2553 30 1 2.2490 -1.6317 1.1527 31 1 2.5942 0.8986 4.9794 32 1 3.4258 -4.3119 5.9432 33 1 5.0553 -3.5894 5.9263 34 1 2.7919 -3.0159 7.8887 35 1 4.3736 -3.7540 8.2455 36 1 3.5550 -1.3959 9.7875 37 1 5.1907 -2.0974 9.8125 38 1 4.9726 -0.3593 9.4971 39 1 4.0476 0.3793 7.1939 40 1 2.6069 -0.5255 7.7253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194717840.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:01 Heat of formation + Delta-G solvation = -37.363958 kcal Electronic energy + Delta-G solvation = -20754.218053 eV Core-core repulsion = 17659.050167 eV Total energy + Delta-G solvation = -3095.167885 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.63694 -38.80285 -35.72478 -34.79137 -32.42045 -32.13212 -30.36848 -29.02428 -26.86662 -25.34533 -24.35850 -23.07476 -21.42041 -20.12211 -19.74428 -18.56112 -17.82731 -16.78771 -15.92272 -15.45725 -14.87927 -14.84537 -14.53529 -14.24766 -14.08488 -13.70439 -13.33982 -13.08956 -12.82338 -12.53308 -12.44733 -12.37190 -12.33613 -12.04259 -11.59055 -11.34021 -11.14625 -11.09637 -10.89340 -10.81722 -10.72995 -10.59047 -10.50855 -9.89046 -9.38042 -9.22219 -8.71873 -8.55526 -8.32803 -8.08222 -6.24556 -4.28693 0.68959 1.57431 2.02355 2.46084 3.26287 3.33975 3.41417 3.73693 3.90959 4.31965 4.38133 4.50716 4.53696 4.84700 4.92183 5.12164 5.16274 5.23542 5.29335 5.41174 5.44920 5.50951 5.54351 5.59377 5.64640 5.74713 5.84403 5.90416 6.08204 6.12906 6.30215 6.37880 6.49449 6.52007 6.66313 6.91493 7.16713 7.34323 7.50570 8.09555 8.51271 8.74878 8.87650 9.36987 10.87069 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.032305 B = 0.003494 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.538870 B = 8011.835756 C = 8378.399895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 H 0.052 0.948 4 C -0.531 4.531 5 H 0.079 0.921 6 C 0.082 3.918 7 N -0.888 5.888 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.260 1.260 12 N -0.697 5.697 13 C 0.574 3.426 14 O -0.548 6.548 15 C -0.246 4.246 16 C -0.065 4.065 17 C -0.116 4.116 18 C -0.209 4.209 19 S 0.198 5.802 20 C -0.047 4.047 21 C -0.109 4.109 22 C -0.093 4.093 23 H 0.073 0.927 24 C -0.147 4.147 25 C -0.050 4.050 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.030 0.970 29 H 0.268 0.732 30 H 0.391 0.609 31 H 0.148 0.852 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.102 -5.572 22.967 23.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.129 3.871 3 H 0.070 0.930 4 C -0.569 4.569 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.524 5.524 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.184 1.184 12 N -0.345 5.345 13 C 0.358 3.642 14 O -0.429 6.429 15 C -0.366 4.366 16 C -0.098 4.098 17 C -0.129 4.129 18 C -0.329 4.329 19 S 0.469 5.531 20 C -0.086 4.086 21 C -0.148 4.148 22 C -0.111 4.111 23 H 0.092 0.908 24 C -0.204 4.204 25 C -0.089 4.089 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.224 0.776 31 H 0.166 0.834 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.962 -5.915 21.631 22.620 hybrid contribution 0.126 1.670 0.778 1.847 sum 3.087 -4.245 22.409 23.016 Atomic orbital electron populations 1.22223 0.98368 1.00713 0.99387 1.19187 0.91083 0.94369 0.82424 0.93007 1.20995 1.45410 0.95673 0.94866 0.90256 1.24930 0.93518 0.98688 0.95115 1.69879 1.44572 1.36234 1.01688 0.86900 0.79897 0.85777 0.77409 1.19779 1.21098 1.18404 1.46603 1.64601 1.13596 1.09696 1.17094 0.78426 0.86457 0.82182 1.90763 1.52122 1.15138 1.84834 1.24652 1.14322 0.98178 0.99491 1.20539 0.97850 1.01093 0.90326 1.19436 1.04299 0.92053 0.97148 1.24582 1.09116 0.99493 0.99697 1.83038 1.59740 1.06822 1.03522 1.20345 1.01001 0.93964 0.93305 1.21629 1.01639 0.96601 0.94917 1.21158 0.99512 0.94734 0.95744 0.90828 1.21829 1.01828 1.01593 0.95159 1.20571 0.99776 0.98521 0.89996 0.92713 0.93311 0.95129 0.92185 0.77586 0.83447 0.90398 0.90176 0.91431 0.91196 0.92586 0.92610 0.92540 0.90638 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.47 37.16 0.35 -2.97 16 2 C 0.23 5.67 2.22 -69.08 -0.15 5.52 16 3 H 0.05 1.38 4.73 -51.93 -0.25 1.13 16 4 C -0.53 -14.49 9.05 -34.44 -0.31 -14.80 16 5 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 6 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 7 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 8 Si 0.87 21.76 26.99 -169.99 -4.59 17.17 16 9 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.26 -6.37 6.82 56.52 0.39 -5.98 16 12 N -0.70 -15.00 5.06 -56.27 -0.28 -15.28 16 13 C 0.57 12.08 7.75 -12.90 -0.10 11.98 16 14 O -0.55 -13.24 16.49 5.19 0.09 -13.15 16 15 C -0.25 -4.17 6.43 -36.98 -0.24 -4.41 16 16 C -0.07 -0.99 9.80 -40.33 -0.40 -1.38 16 17 C -0.12 -1.44 5.75 -104.87 -0.60 -2.04 16 18 C -0.21 -2.48 6.15 -34.88 -0.21 -2.69 16 19 S 0.20 2.67 22.09 -107.50 -2.37 0.30 16 20 C -0.05 -0.41 6.22 -27.33 -0.17 -0.58 16 21 C -0.11 -0.81 5.24 -26.57 -0.14 -0.95 16 22 C -0.09 -0.72 2.68 -90.53 -0.24 -0.96 16 23 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 24 C -0.15 -0.91 9.17 37.16 0.34 -0.57 16 25 C -0.05 -0.46 5.42 -27.09 -0.15 -0.61 16 26 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.39 7.57 7.70 -40.82 -0.31 7.26 16 31 H 0.15 2.19 8.05 -52.49 -0.42 1.77 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 LS Contribution 339.00 15.07 5.11 5.11 Total: -1.00 -31.43 339.00 -9.44 -40.87 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.05 Total: 2.69 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -2.12 Total: -12.26 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.49 Total: -40.73 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.09 Total: -13.15 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.59 Total: 17.17 kcal Atomic # 16 Polarization: 2.67 SS G_CDS: -2.37 Total: 0.30 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.43 -9.44 -40.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194717840.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.509 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds