Wall clock time and date at job start Tue Mar 31 2020 07:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47102 * 2 1 4 4 C 1.50700 * 109.47126 * 239.99952 * 2 1 3 5 5 H 1.08006 * 119.99591 * 275.00464 * 4 2 1 6 6 C 1.37866 * 120.00142 * 95.00007 * 4 2 1 7 7 N 1.31518 * 120.00114 * 184.91536 * 6 4 2 8 8 Si 1.86798 * 120.00197 * 4.91950 * 6 4 2 9 9 H 1.48501 * 109.47291 * 84.82858 * 8 6 4 10 10 H 1.48504 * 109.47419 * 204.83399 * 8 6 4 11 11 H 1.48505 * 109.46960 * 324.82942 * 8 6 4 12 12 N 1.46498 * 109.47029 * 119.99557 * 2 1 3 13 13 C 1.34775 * 120.00265 * 275.00138 * 12 2 1 14 14 O 1.21694 * 120.00004 * 359.97438 * 13 12 2 15 15 C 1.46582 * 120.00036 * 180.02562 * 13 12 2 16 16 C 1.36114 * 125.45907 * 179.97438 * 15 13 12 17 17 C 1.38277 * 114.10193 * 179.97438 * 16 15 13 18 18 C 1.35234 * 113.92931 * 359.97438 * 17 16 15 19 19 S 1.70754 * 111.10632 * 0.02562 * 18 17 16 20 20 C 1.51713 * 124.33729 * 180.02562 * 18 17 16 21 21 C 1.53094 * 108.75116 * 16.54912 * 20 18 17 22 22 C 1.53209 * 108.96584 * 309.89494 * 21 20 18 23 23 H 1.08995 * 109.54560 * 310.95710 * 22 21 20 24 24 C 1.53001 * 109.54268 * 190.81518 * 22 21 20 25 25 C 1.52330 * 123.07576 * 179.97438 * 17 16 15 26 26 H 1.08994 * 109.47230 * 55.03547 * 1 2 3 27 27 H 1.08997 * 109.47163 * 175.03990 * 1 2 3 28 28 H 1.09001 * 109.46872 * 295.04068 * 1 2 3 29 29 H 0.96996 * 120.00218 * 180.02562 * 7 6 4 30 30 H 0.97004 * 119.99861 * 94.99866 * 12 2 1 31 31 H 1.07998 * 122.94755 * 359.97328 * 16 15 13 32 32 H 1.09001 * 109.59140 * 136.32714 * 20 18 17 33 33 H 1.08998 * 109.59262 * 256.76637 * 20 18 17 34 34 H 1.09000 * 109.55251 * 69.77864 * 21 20 18 35 35 H 1.08997 * 109.54696 * 190.06750 * 21 20 18 36 36 H 1.09002 * 109.47459 * 300.26746 * 24 22 21 37 37 H 1.08999 * 109.46991 * 60.26635 * 24 22 21 38 38 H 1.08998 * 109.47201 * 180.26303 * 24 22 21 39 39 H 1.09000 * 109.58361 * 317.17717 * 25 17 16 40 40 H 1.08999 * 109.58159 * 77.57625 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.1354 -1.7856 -1.2290 6 6 2.3603 0.0120 -2.3580 7 7 2.7060 -0.6133 -3.4622 8 14 2.3137 1.8790 -2.3174 9 1 3.5993 2.3947 -1.7822 10 1 2.1059 2.3990 -3.6928 11 1 1.1987 2.3274 -1.4450 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3572 14 8 1.8581 1.1627 2.4117 15 6 2.6362 -0.7090 3.5539 16 6 2.8088 -0.1406 4.7786 17 6 3.2829 -1.0107 5.7431 18 6 3.4884 -2.2693 5.2931 19 16 3.0923 -2.4027 3.6375 20 6 4.0034 -3.4108 6.1494 21 6 3.8491 -3.0285 7.6238 22 6 4.4502 -1.6363 7.8427 23 1 5.4442 -1.5942 7.3978 24 6 4.5492 -1.3517 9.3428 25 6 3.5501 -0.5904 7.1827 26 1 -0.3633 0.5889 -0.8421 27 1 -0.3633 -1.0238 -0.0889 28 1 -0.3633 0.4350 0.9311 29 1 2.9370 -0.1050 -4.2553 30 1 2.2490 -1.6317 1.1527 31 1 2.5942 0.8986 4.9794 32 1 3.4258 -4.3119 5.9432 33 1 5.0553 -3.5894 5.9263 34 1 2.7919 -3.0159 7.8887 35 1 4.3736 -3.7540 8.2455 36 1 3.5550 -1.3959 9.7875 37 1 5.1907 -2.0974 9.8125 38 1 4.9726 -0.3593 9.4971 39 1 4.0476 0.3793 7.1939 40 1 2.6069 -0.5255 7.7253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194717840.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:59 Heat of formation + Delta-G solvation = -56.001029 kcal Electronic energy + Delta-G solvation = -20755.026217 eV Core-core repulsion = 17659.050167 eV Total energy + Delta-G solvation = -3095.976050 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.88903 -40.09610 -36.97876 -36.33973 -34.46154 -32.92277 -32.00544 -30.18255 -27.59277 -27.38423 -25.58412 -23.84241 -22.85849 -21.57522 -20.96947 -19.95111 -19.03003 -18.45490 -17.46333 -16.95543 -16.27956 -16.10069 -15.57157 -15.50850 -15.10382 -14.94979 -14.58738 -14.57870 -14.27438 -14.00614 -13.63764 -13.39368 -13.34489 -13.07711 -12.94130 -12.84335 -12.72664 -12.50376 -12.20285 -12.09177 -11.90132 -11.48981 -11.40357 -11.30377 -11.24479 -11.09576 -10.87244 -10.03877 -9.60291 -9.30270 -8.42799 -6.49981 -0.48647 0.45806 0.93859 1.26827 1.31377 1.33023 1.42284 2.18785 2.23841 2.29940 2.99016 3.62703 3.74425 3.93520 3.95705 4.12451 4.19962 4.38997 4.40143 4.58148 4.61353 4.66962 4.74515 4.75943 4.83307 4.87226 4.96469 5.00215 5.02581 5.08239 5.09697 5.22120 5.29265 5.35998 5.39522 5.48417 5.53779 5.57025 5.60644 6.06026 6.53115 6.72068 7.13082 7.25602 8.72090 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.032305 B = 0.003494 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.538870 B = 8011.835756 C = 8378.399895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.234 3.766 3 H 0.033 0.967 4 C -0.530 4.530 5 H 0.057 0.943 6 C 0.036 3.964 7 N -0.926 5.926 8 Si 0.925 3.075 9 H -0.275 1.275 10 H -0.273 1.273 11 H -0.256 1.256 12 N -0.699 5.699 13 C 0.575 3.425 14 O -0.588 6.588 15 C -0.294 4.294 16 C -0.054 4.054 17 C -0.129 4.129 18 C -0.188 4.188 19 S 0.217 5.783 20 C -0.051 4.051 21 C -0.106 4.106 22 C -0.091 4.091 23 H 0.069 0.931 24 C -0.143 4.143 25 C -0.049 4.049 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.036 0.964 29 H 0.272 0.728 30 H 0.400 0.600 31 H 0.142 0.858 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.580 -6.424 25.653 26.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.131 3.869 3 H 0.051 0.949 4 C -0.568 4.568 5 H 0.076 0.924 6 C -0.165 4.165 7 N -0.564 5.564 8 Si 0.750 3.250 9 H -0.200 1.200 10 H -0.198 1.198 11 H -0.180 1.180 12 N -0.347 5.347 13 C 0.362 3.638 14 O -0.472 6.472 15 C -0.414 4.414 16 C -0.089 4.089 17 C -0.141 4.141 18 C -0.308 4.308 19 S 0.488 5.512 20 C -0.090 4.090 21 C -0.145 4.145 22 C -0.110 4.110 23 H 0.088 0.912 24 C -0.201 4.201 25 C -0.088 4.088 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.235 0.765 31 H 0.160 0.840 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.439 -6.794 24.327 25.491 hybrid contribution 0.026 1.815 0.073 1.817 sum 3.465 -4.978 24.401 25.143 Atomic orbital electron populations 1.22118 0.96734 1.01490 0.99685 1.18983 0.92291 0.93154 0.82513 0.94925 1.21141 1.44862 0.94840 0.95988 0.92440 1.25583 0.93525 1.02484 0.94882 1.69965 1.46195 1.37825 1.02432 0.86074 0.79746 0.81272 0.77921 1.20049 1.19783 1.17974 1.46347 1.65076 1.14001 1.09324 1.17513 0.77351 0.86051 0.82849 1.90720 1.53912 1.16881 1.85644 1.24238 1.18210 1.00539 0.98454 1.20748 0.96464 1.01312 0.90336 1.19674 1.04400 0.91793 0.98246 1.25140 1.06435 1.00374 0.98893 1.82919 1.59318 1.04007 1.04981 1.20591 1.01827 0.93045 0.93540 1.21654 1.01970 0.96810 0.94061 1.21154 0.98767 0.94428 0.96612 0.91232 1.21794 1.02347 1.01999 0.93913 1.20672 1.00703 0.99302 0.88106 0.92788 0.92227 0.94468 0.91831 0.76512 0.84007 0.88897 0.88786 0.91465 0.88943 0.92202 0.91539 0.92525 0.90416 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.33 9.47 71.98 0.68 -5.65 16 2 C 0.23 11.59 2.22 44.25 0.10 11.69 16 3 H 0.03 1.76 4.73 -2.39 -0.01 1.74 16 4 C -0.53 -29.41 9.05 25.60 0.23 -29.18 16 5 H 0.06 3.37 8.06 -2.91 -0.02 3.35 16 6 C 0.04 2.07 5.47 84.65 0.46 2.53 16 7 N -0.93 -55.51 13.96 21.44 0.30 -55.21 16 8 Si 0.93 45.21 26.99 68.60 1.85 47.07 16 9 H -0.27 -13.45 7.11 99.48 0.71 -12.74 16 10 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.26 -12.23 6.82 99.48 0.68 -11.55 16 12 N -0.70 -30.54 5.06 -450.17 -2.28 -32.82 16 13 C 0.57 24.64 7.75 86.42 0.67 25.31 16 14 O -0.59 -29.11 16.49 -4.33 -0.07 -29.18 16 15 C -0.29 -10.00 6.43 23.95 0.15 -9.85 16 16 C -0.05 -1.62 9.80 21.78 0.21 -1.41 16 17 C -0.13 -2.98 5.75 -20.02 -0.12 -3.09 16 18 C -0.19 -4.01 6.15 25.32 0.16 -3.86 16 19 S 0.22 5.59 22.09 -56.49 -1.25 4.34 16 20 C -0.05 -0.70 6.22 30.20 0.19 -0.51 16 21 C -0.11 -1.16 5.24 30.70 0.16 -0.99 16 22 C -0.09 -1.12 2.68 -10.74 -0.03 -1.15 16 23 H 0.07 0.94 8.10 -2.39 -0.02 0.92 16 24 C -0.14 -1.31 9.17 71.98 0.66 -0.65 16 25 C -0.05 -0.80 5.42 30.36 0.16 -0.64 16 26 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 29 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 30 H 0.40 15.75 7.70 -92.71 -0.71 15.03 16 31 H 0.14 4.27 8.05 -2.91 -0.02 4.24 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 0.77 8.10 -2.39 -0.02 0.75 16 35 H 0.09 0.66 8.11 -2.39 -0.02 0.64 16 36 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 37 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.08 1.25 8.13 -2.39 -0.02 1.23 16 Total: -1.00 -68.38 339.00 2.55 -65.84 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.30 Total: 17.39 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 3.70 Total: -17.44 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -1.98 Total: -88.02 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.07 Total: -29.18 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.85 Total: 47.07 kcal Atomic # 16 Polarization: 5.59 SS G_CDS: -1.25 Total: 4.34 kcal Total: -68.38 2.55 -65.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194717840.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.838 kcal (2) G-P(sol) polarization free energy of solvation -68.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds