Wall clock time and date at job start Tue Mar 31 2020 07:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.63078 * 2 1 4 4 C 1.53253 * 109.62891 * 239.60692 * 2 1 3 5 5 N 1.46468 * 109.86119 * 178.09099 * 4 2 1 6 6 C 1.46902 * 110.99927 * 197.76717 * 5 4 2 7 7 C 1.50706 * 109.46889 * 170.00306 * 6 5 4 8 8 C 1.38301 * 119.92740 * 269.72768 * 7 6 5 9 9 C 1.38104 * 120.06125 * 179.72483 * 8 7 6 10 10 C 1.38874 * 119.93284 * 0.56771 * 9 8 7 11 11 O 1.35750 * 120.06915 * 179.68157 * 10 9 8 12 12 C 1.34827 * 117.00204 * 174.48912 * 11 10 9 13 13 H 1.07998 * 119.99903 * 5.05836 * 12 11 10 14 14 C 1.38660 * 120.00180 * 185.05809 * 12 11 10 15 15 N 1.31561 * 119.99786 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00121 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46935 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47144 * 120.00001 * 16 14 12 19 19 H 1.48498 * 109.47198 * 240.00045 * 16 14 12 20 20 C 1.38879 * 119.86409 * 359.70294 * 10 9 8 21 21 C 1.38095 * 119.92824 * 0.02562 * 20 10 9 22 22 C 1.46468 * 112.55441 * 72.66053 * 5 4 2 23 23 C 1.53251 * 109.86184 * 287.33961 * 22 5 4 24 24 S 1.81899 * 109.79576 * 120.49976 * 2 1 3 25 25 H 1.09003 * 109.47324 * 180.39485 * 1 2 3 26 26 H 1.09009 * 109.46431 * 300.39420 * 1 2 3 27 27 H 1.08993 * 109.47147 * 60.38846 * 1 2 3 28 28 H 1.09005 * 109.40736 * 298.21707 * 4 2 1 29 29 H 1.09005 * 109.40597 * 57.97648 * 4 2 1 30 30 H 1.08999 * 109.47205 * 290.00093 * 6 5 4 31 31 H 1.08993 * 109.46912 * 50.00356 * 6 5 4 32 32 H 1.07995 * 119.96923 * 359.97438 * 8 7 6 33 33 H 1.08007 * 120.02992 * 180.27382 * 9 8 7 34 34 H 0.97001 * 119.99563 * 180.02562 * 15 14 12 35 35 H 1.07996 * 120.03740 * 180.02562 * 20 10 9 36 36 H 1.08004 * 119.96396 * 180.02562 * 21 20 10 37 37 H 1.09001 * 109.40483 * 167.22262 * 22 5 4 38 38 H 1.08999 * 109.34600 * 47.41982 * 22 5 4 39 39 H 1.09004 * 109.63296 * 302.30826 * 23 22 5 40 40 H 1.08995 * 109.80066 * 181.80722 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0448 -0.7303 -1.2451 5 7 3.5088 -0.6938 -1.2737 6 6 4.0167 -0.9958 -2.6186 7 6 5.4957 -0.7114 -2.6725 8 6 5.9440 0.5437 -3.0420 9 6 7.2985 0.8091 -3.0868 10 6 8.2110 -0.1893 -2.7718 11 8 9.5433 0.0667 -2.8212 12 6 10.3703 -0.9089 -2.3943 13 1 9.9696 -1.8710 -2.1114 14 6 11.7352 -0.6768 -2.3185 15 7 12.2232 0.4954 -2.6627 16 14 12.8809 -2.0281 -1.7264 17 1 12.0889 -3.2417 -1.4021 18 1 13.8619 -2.3485 -2.7941 19 1 13.6027 -1.5686 -0.5127 20 6 7.7578 -1.4502 -2.4065 21 6 6.4020 -1.7077 -2.3581 22 6 4.1124 -1.5778 -0.2739 23 6 3.9278 -0.9829 1.1263 24 16 2.1460 -0.8686 1.4747 25 1 -0.3634 -1.0277 0.0071 26 1 -0.3632 0.5200 0.8865 27 1 -0.3633 0.5078 -0.8934 28 1 1.7086 -1.7670 -1.2219 29 1 1.6530 -0.2437 -2.1383 30 1 3.8404 -2.0471 -2.8460 31 1 3.5003 -0.3743 -3.3500 32 1 5.2340 1.3182 -3.2919 33 1 7.6479 1.7907 -3.3712 34 1 13.1781 0.6576 -2.6100 35 1 8.4650 -2.2285 -2.1606 36 1 6.0489 -2.6880 -2.0737 37 1 5.1764 -1.6880 -0.4831 38 1 3.6314 -2.5549 -0.3185 39 1 4.3726 0.0116 1.1633 40 1 4.4051 -1.6253 1.8663 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264584672.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:29 Heat of formation + Delta-G solvation = -0.657733 kcal Electronic energy + Delta-G solvation = -20888.784594 eV Core-core repulsion = 17795.208410 eV Total energy + Delta-G solvation = -3093.576184 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.38430 -38.26743 -36.36719 -33.74505 -32.37466 -31.41366 -30.25482 -29.29201 -26.45055 -25.37576 -24.33713 -22.32459 -21.92947 -21.13377 -20.28389 -18.01817 -17.06556 -16.98142 -15.70613 -15.52255 -14.93837 -14.67734 -14.58793 -14.22006 -14.09516 -14.03405 -13.60479 -13.44024 -12.91920 -12.75022 -12.52799 -12.30640 -12.13313 -12.04448 -11.88118 -11.56605 -11.41979 -11.27594 -10.92472 -10.75314 -10.64722 -10.53341 -10.44569 -9.75045 -9.36822 -8.87167 -8.41986 -8.19806 -7.76915 -7.22213 -6.48468 -4.07350 1.67520 2.16383 2.22271 2.44509 3.09547 3.11412 3.16910 3.76308 3.93758 4.55454 4.57162 4.75715 4.89757 4.95332 5.06160 5.11259 5.19496 5.24731 5.27352 5.32284 5.42722 5.44414 5.50270 5.66179 5.69681 5.72090 5.81055 5.83619 5.87185 5.91751 6.17289 6.38059 6.66131 6.84388 6.93775 6.97894 7.09263 7.22903 7.34258 7.40654 7.78419 7.96514 8.97258 9.67169 10.69548 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.027412 B = 0.003238 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.200631 B = 8645.902544 C = 9152.693771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.043 4.043 3 H 0.096 0.904 4 C 0.060 3.940 5 N -0.547 5.547 6 C 0.119 3.881 7 C -0.183 4.183 8 C -0.051 4.051 9 C -0.194 4.194 10 C 0.157 3.843 11 O -0.177 6.177 12 C -0.392 4.392 13 H 0.092 0.908 14 C 0.039 3.961 15 N -0.862 5.862 16 Si 0.941 3.059 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.275 1.275 20 C -0.234 4.234 21 C -0.067 4.067 22 C 0.050 3.950 23 C -0.070 4.070 24 S -0.284 6.284 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.270 0.730 35 H 0.126 0.874 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.042 0.958 39 H 0.092 0.908 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.106 -3.367 3.459 19.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.173 4.173 3 H 0.114 0.886 4 C -0.070 4.070 5 N -0.272 5.272 6 C -0.007 4.007 7 C -0.184 4.184 8 C -0.070 4.070 9 C -0.213 4.213 10 C 0.103 3.897 11 O -0.080 6.080 12 C -0.468 4.468 13 H 0.110 0.890 14 C -0.165 4.165 15 N -0.496 5.496 16 Si 0.766 3.234 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.253 4.253 21 C -0.086 4.086 22 C -0.079 4.079 23 C -0.218 4.218 24 S -0.058 6.058 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.080 0.920 35 H 0.144 0.856 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.060 0.940 39 H 0.111 0.889 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.169 -2.967 4.393 19.889 hybrid contribution 1.122 -1.050 -0.804 1.734 sum -18.047 -4.017 3.589 18.834 Atomic orbital electron populations 1.21592 0.91927 1.02883 1.02663 1.23193 0.98512 1.01774 0.93776 0.88597 1.22290 0.88142 0.99220 0.97324 1.61179 1.05289 1.54707 1.05985 1.20751 0.92961 0.98568 0.88398 1.19046 0.93091 0.95173 1.11076 1.20441 0.94031 0.95299 0.97253 1.20225 0.91830 0.98760 1.10500 1.19395 0.85417 0.92613 0.92299 1.83981 1.10653 1.41551 1.71861 1.21371 0.87445 0.93100 1.44897 0.89026 1.25298 0.96535 0.97826 0.96860 1.70050 1.13822 1.21548 1.44217 0.85649 0.79702 0.79547 0.78546 1.19102 1.20126 1.20097 1.21119 0.95593 0.97961 1.10653 1.20584 0.92720 0.97339 0.97960 1.22320 1.02194 0.93339 0.90032 1.23502 0.93073 1.05596 0.99648 1.86803 1.09333 1.77722 1.31965 0.91803 0.91637 0.91087 0.93761 0.89946 0.94817 0.90641 0.87116 0.86559 0.92029 0.85607 0.87884 0.88081 0.93993 0.88902 0.87694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 9.24 37.16 0.34 -0.68 16 2 C -0.04 -0.44 3.33 -26.60 -0.09 -0.52 16 3 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.06 0.61 4.72 -3.93 -0.02 0.59 16 5 N -0.55 -6.78 4.40 -236.47 -1.04 -7.82 16 6 C 0.12 1.53 5.12 -4.97 -0.03 1.51 16 7 C -0.18 -2.96 4.89 -104.57 -0.51 -3.47 16 8 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 9 C -0.19 -4.02 9.99 -39.40 -0.39 -4.42 16 10 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 11 O -0.18 -5.01 9.76 0.06 0.00 -5.01 16 12 C -0.39 -10.82 9.49 30.89 0.29 -10.53 16 13 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 14 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 15 N -0.86 -25.10 13.67 55.48 0.76 -24.34 16 16 Si 0.94 20.32 29.55 -169.99 -5.02 15.30 16 17 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 19 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 20 C -0.23 -4.92 9.17 -39.40 -0.36 -5.28 16 21 C -0.07 -1.17 7.77 -39.61 -0.31 -1.48 16 22 C 0.05 0.63 5.26 -3.93 -0.02 0.61 16 23 C -0.07 -0.83 6.69 37.29 0.25 -0.58 16 24 S -0.28 -3.36 21.78 -107.50 -2.34 -5.70 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.46 7.91 -51.93 -0.41 0.05 16 29 H 0.08 0.74 7.76 -51.93 -0.40 0.33 16 30 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.08 0.88 7.78 -51.93 -0.40 0.48 16 32 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 34 H 0.27 7.18 8.31 -40.82 -0.34 6.85 16 35 H 0.13 2.67 5.64 -52.49 -0.30 2.38 16 36 H 0.10 1.54 7.74 -52.48 -0.41 1.13 16 37 H 0.10 1.41 4.95 -51.93 -0.26 1.16 16 38 H 0.04 0.51 7.91 -51.93 -0.41 0.10 16 39 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 334.22 15.07 5.04 5.04 Total: -1.00 -29.66 334.22 -9.99 -39.65 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.80 Total: 3.99 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -1.58 Total: -21.10 kcal Atomic # 7 Polarization: -31.89 SS G_CDS: -0.28 Total: -32.17 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: 0.00 Total: -5.01 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -2.34 Total: -5.70 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.66 -9.99 -39.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264584672.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.993 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds