Wall clock time and date at job start Tue Mar 31 2020 07:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.63078 * 2 1 4 4 C 1.53253 * 109.62891 * 239.60692 * 2 1 3 5 5 N 1.46468 * 109.86119 * 178.09099 * 4 2 1 6 6 C 1.46902 * 110.99927 * 197.76717 * 5 4 2 7 7 C 1.50706 * 109.46889 * 170.00306 * 6 5 4 8 8 C 1.38301 * 119.92740 * 269.72768 * 7 6 5 9 9 C 1.38104 * 120.06125 * 179.72483 * 8 7 6 10 10 C 1.38874 * 119.93284 * 0.56771 * 9 8 7 11 11 O 1.35750 * 120.06915 * 179.68157 * 10 9 8 12 12 C 1.34827 * 117.00204 * 174.48912 * 11 10 9 13 13 H 1.07998 * 119.99903 * 5.05836 * 12 11 10 14 14 C 1.38660 * 120.00180 * 185.05809 * 12 11 10 15 15 N 1.31561 * 119.99786 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00121 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46935 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47144 * 120.00001 * 16 14 12 19 19 H 1.48498 * 109.47198 * 240.00045 * 16 14 12 20 20 C 1.38879 * 119.86409 * 359.70294 * 10 9 8 21 21 C 1.38095 * 119.92824 * 0.02562 * 20 10 9 22 22 C 1.46468 * 112.55441 * 72.66053 * 5 4 2 23 23 C 1.53251 * 109.86184 * 287.33961 * 22 5 4 24 24 S 1.81899 * 109.79576 * 120.49976 * 2 1 3 25 25 H 1.09003 * 109.47324 * 180.39485 * 1 2 3 26 26 H 1.09009 * 109.46431 * 300.39420 * 1 2 3 27 27 H 1.08993 * 109.47147 * 60.38846 * 1 2 3 28 28 H 1.09005 * 109.40736 * 298.21707 * 4 2 1 29 29 H 1.09005 * 109.40597 * 57.97648 * 4 2 1 30 30 H 1.08999 * 109.47205 * 290.00093 * 6 5 4 31 31 H 1.08993 * 109.46912 * 50.00356 * 6 5 4 32 32 H 1.07995 * 119.96923 * 359.97438 * 8 7 6 33 33 H 1.08007 * 120.02992 * 180.27382 * 9 8 7 34 34 H 0.97001 * 119.99563 * 180.02562 * 15 14 12 35 35 H 1.07996 * 120.03740 * 180.02562 * 20 10 9 36 36 H 1.08004 * 119.96396 * 180.02562 * 21 20 10 37 37 H 1.09001 * 109.40483 * 167.22262 * 22 5 4 38 38 H 1.08999 * 109.34600 * 47.41982 * 22 5 4 39 39 H 1.09004 * 109.63296 * 302.30826 * 23 22 5 40 40 H 1.08995 * 109.80066 * 181.80722 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0448 -0.7303 -1.2451 5 7 3.5088 -0.6938 -1.2737 6 6 4.0167 -0.9958 -2.6186 7 6 5.4957 -0.7114 -2.6725 8 6 5.9440 0.5437 -3.0420 9 6 7.2985 0.8091 -3.0868 10 6 8.2110 -0.1893 -2.7718 11 8 9.5433 0.0667 -2.8212 12 6 10.3703 -0.9089 -2.3943 13 1 9.9696 -1.8710 -2.1114 14 6 11.7352 -0.6768 -2.3185 15 7 12.2232 0.4954 -2.6627 16 14 12.8809 -2.0281 -1.7264 17 1 12.0889 -3.2417 -1.4021 18 1 13.8619 -2.3485 -2.7941 19 1 13.6027 -1.5686 -0.5127 20 6 7.7578 -1.4502 -2.4065 21 6 6.4020 -1.7077 -2.3581 22 6 4.1124 -1.5778 -0.2739 23 6 3.9278 -0.9829 1.1263 24 16 2.1460 -0.8686 1.4747 25 1 -0.3634 -1.0277 0.0071 26 1 -0.3632 0.5200 0.8865 27 1 -0.3633 0.5078 -0.8934 28 1 1.7086 -1.7670 -1.2219 29 1 1.6530 -0.2437 -2.1383 30 1 3.8404 -2.0471 -2.8460 31 1 3.5003 -0.3743 -3.3500 32 1 5.2340 1.3182 -3.2919 33 1 7.6479 1.7907 -3.3712 34 1 13.1781 0.6576 -2.6100 35 1 8.4650 -2.2285 -2.1606 36 1 6.0489 -2.6880 -2.0737 37 1 5.1764 -1.6880 -0.4831 38 1 3.6314 -2.5549 -0.3185 39 1 4.3726 0.0116 1.1633 40 1 4.4051 -1.6253 1.8663 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264584672.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:28 Heat of formation + Delta-G solvation = -18.026817 kcal Electronic energy + Delta-G solvation = -20889.537774 eV Core-core repulsion = 17795.208410 eV Total energy + Delta-G solvation = -3094.329364 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.91446 -39.54951 -37.88106 -34.66672 -34.22333 -32.59501 -31.81699 -30.53686 -27.77102 -26.91228 -25.51969 -23.69099 -23.08679 -22.16977 -21.64026 -19.83625 -18.81118 -17.95089 -16.79176 -16.59775 -16.37739 -16.27591 -15.70165 -15.53511 -15.42152 -15.27114 -14.93828 -14.73584 -14.38190 -14.19257 -13.63309 -13.54972 -13.30232 -13.05860 -12.91469 -12.82890 -12.76263 -12.40782 -12.27984 -12.15222 -12.12461 -12.01544 -11.53583 -11.17031 -10.80309 -10.64023 -9.75462 -9.37328 -8.90576 -8.69314 -8.47775 -6.15761 0.59709 0.66583 0.81658 1.34499 1.42523 1.52607 1.56753 2.16891 2.66028 2.96196 3.25303 3.53094 3.75727 3.84319 4.00100 4.04182 4.13811 4.16550 4.21603 4.25670 4.40946 4.46094 4.60172 4.62373 4.69139 4.72764 4.79478 4.84754 4.85984 4.91597 5.04475 5.08951 5.15163 5.25155 5.30277 5.57405 5.71633 5.78368 6.00811 6.02908 6.11916 6.24484 6.97293 7.78797 8.75797 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.027412 B = 0.003238 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.200631 B = 8645.902544 C = 9152.693771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.037 4.037 3 H 0.088 0.912 4 C 0.062 3.938 5 N -0.558 5.558 6 C 0.122 3.878 7 C -0.154 4.154 8 C -0.045 4.045 9 C -0.206 4.206 10 C 0.115 3.885 11 O -0.234 6.234 12 C -0.412 4.412 13 H 0.102 0.898 14 C -0.024 4.024 15 N -0.921 5.921 16 Si 1.018 2.982 17 H -0.251 1.251 18 H -0.268 1.268 19 H -0.269 1.269 20 C -0.242 4.242 21 C -0.061 4.061 22 C 0.053 3.947 23 C -0.067 4.067 24 S -0.308 6.308 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.048 0.952 29 H 0.105 0.895 30 H 0.050 0.950 31 H 0.099 0.901 32 H 0.145 0.855 33 H 0.110 0.890 34 H 0.272 0.728 35 H 0.117 0.883 36 H 0.135 0.865 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.471 -4.874 3.496 23.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.166 4.166 3 H 0.106 0.894 4 C -0.066 4.066 5 N -0.282 5.282 6 C -0.004 4.004 7 C -0.155 4.155 8 C -0.064 4.064 9 C -0.226 4.226 10 C 0.065 3.935 11 O -0.141 6.141 12 C -0.488 4.488 13 H 0.119 0.881 14 C -0.221 4.221 15 N -0.560 5.560 16 Si 0.837 3.163 17 H -0.174 1.174 18 H -0.193 1.193 19 H -0.194 1.194 20 C -0.262 4.262 21 C -0.080 4.080 22 C -0.076 4.076 23 C -0.215 4.215 24 S -0.082 6.082 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.111 0.889 28 H 0.067 0.933 29 H 0.123 0.877 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.163 0.837 33 H 0.128 0.872 34 H 0.081 0.919 35 H 0.134 0.866 36 H 0.153 0.847 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -22.609 -4.486 4.432 23.471 hybrid contribution 1.737 -0.546 -0.814 1.995 sum -20.871 -5.031 3.618 21.772 Atomic orbital electron populations 1.21588 0.90022 1.03292 1.03656 1.23283 0.99918 1.00860 0.92545 0.89392 1.22347 0.86401 0.99760 0.98138 1.61104 1.06881 1.54817 1.05433 1.20785 0.90079 1.00198 0.89368 1.19560 0.95384 0.93896 1.06700 1.20829 0.92854 0.96790 0.95917 1.20471 0.93172 0.98184 1.10752 1.19936 0.84590 0.94620 0.94357 1.83943 1.12638 1.42659 1.74815 1.21846 0.88175 0.93636 1.45115 0.88116 1.26583 0.98039 1.00586 0.96881 1.70194 1.14293 1.24286 1.47200 0.84538 0.77140 0.76502 0.78091 1.17420 1.19338 1.19411 1.21205 0.97304 0.96774 1.10871 1.20910 0.91147 0.99219 0.96714 1.22257 1.01198 0.93871 0.90258 1.23439 0.93333 1.04902 0.99874 1.86920 1.09165 1.78094 1.33989 0.91635 0.91799 0.88948 0.93334 0.87730 0.93201 0.88271 0.83694 0.87171 0.91866 0.86564 0.84715 0.89744 0.93182 0.90357 0.87022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.24 71.98 0.67 -0.85 16 2 C -0.04 -0.62 3.33 30.68 0.10 -0.52 16 3 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 4 C 0.06 1.00 4.72 86.47 0.41 1.41 16 5 N -0.56 -11.58 4.40 -902.06 -3.97 -15.55 16 6 C 0.12 2.52 5.12 85.56 0.44 2.96 16 7 C -0.15 -4.49 4.89 -19.83 -0.10 -4.58 16 8 C -0.05 -1.47 9.69 22.25 0.22 -1.26 16 9 C -0.21 -8.70 9.99 22.39 0.22 -8.48 16 10 C 0.12 5.69 6.65 22.58 0.15 5.84 16 11 O -0.23 -14.10 9.76 -22.72 -0.22 -14.33 16 12 C -0.41 -23.96 9.49 67.92 0.64 -23.32 16 13 H 0.10 5.38 5.20 -2.91 -0.02 5.37 16 14 C -0.02 -1.34 5.49 84.83 0.47 -0.88 16 15 N -0.92 -56.78 13.67 21.62 0.30 -56.48 16 16 Si 1.02 42.88 29.55 68.60 2.03 44.91 16 17 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 18 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 20 C -0.24 -10.30 9.17 22.39 0.21 -10.10 16 21 C -0.06 -2.00 7.77 22.25 0.17 -1.83 16 22 C 0.05 1.18 5.26 86.47 0.45 1.64 16 23 C -0.07 -1.49 6.69 72.07 0.48 -1.01 16 24 S -0.31 -6.64 21.78 -56.49 -1.23 -7.87 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.78 7.91 -2.38 -0.02 0.76 16 29 H 0.10 1.27 7.76 -2.38 -0.02 1.25 16 30 H 0.05 0.94 8.08 -2.39 -0.02 0.92 16 31 H 0.10 1.69 7.78 -2.39 -0.02 1.67 16 32 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 33 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 34 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.12 5.08 5.64 -2.91 -0.02 5.06 16 36 H 0.14 3.56 7.74 -2.91 -0.02 3.54 16 37 H 0.08 2.15 4.95 -2.39 -0.01 2.13 16 38 H 0.05 1.04 7.91 -2.39 -0.02 1.02 16 39 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 40 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -69.40 334.22 2.46 -66.94 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 1.03 Total: 23.35 kcal Atomic # 6 Polarization: -45.51 SS G_CDS: 4.53 Total: -40.98 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -3.68 Total: -72.03 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.22 Total: -14.33 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: -6.64 SS G_CDS: -1.23 Total: -7.87 kcal Total: -69.40 2.46 -66.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264584672.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.917 kcal (2) G-P(sol) polarization free energy of solvation -69.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds