Wall clock time and date at job start Tue Mar 31 2020 07:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.40754 * 2 1 4 4 C 1.53256 * 109.40365 * 119.75954 * 2 1 3 5 5 S 1.81894 * 108.50363 * 182.12258 * 4 2 1 6 6 C 1.81900 * 101.91674 * 308.69498 * 5 4 2 7 7 C 1.53244 * 108.50557 * 51.30416 * 6 5 4 8 8 N 1.46468 * 109.86246 * 297.99797 * 7 6 5 9 9 C 1.46902 * 111.00041 * 197.76280 * 8 7 6 10 10 C 1.50694 * 109.47046 * 44.02299 * 9 8 7 11 11 C 1.38301 * 119.93262 * 89.99487 * 10 9 8 12 12 C 1.38100 * 120.06954 * 180.02562 * 11 10 9 13 13 C 1.38880 * 119.93180 * 0.02562 * 12 11 10 14 14 O 1.35753 * 120.06801 * 179.97438 * 13 12 11 15 15 C 1.34821 * 117.00047 * 5.52931 * 14 13 12 16 16 H 1.07994 * 120.00555 * 354.94530 * 15 14 13 17 17 C 1.38658 * 119.99851 * 174.94789 * 15 14 13 18 18 N 1.31558 * 119.99765 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 119.99990 * 359.97438 * 17 15 14 20 20 H 1.48511 * 109.47027 * 90.00420 * 19 17 15 21 21 H 1.48498 * 109.47442 * 330.00675 * 19 17 15 22 22 H 1.48500 * 109.47423 * 210.00317 * 19 17 15 23 23 C 1.38883 * 119.86060 * 0.24761 * 13 12 11 24 24 C 1.38096 * 119.92664 * 359.50043 * 23 13 12 25 25 H 1.09002 * 109.47122 * 179.84202 * 1 2 3 26 26 H 1.08998 * 109.47283 * 299.84871 * 1 2 3 27 27 H 1.09007 * 109.46550 * 59.84375 * 1 2 3 28 28 H 1.08995 * 109.62867 * 301.83094 * 4 2 1 29 29 H 1.08999 * 109.62744 * 62.41879 * 4 2 1 30 30 H 1.08997 * 109.63366 * 171.01677 * 6 5 4 31 31 H 1.09005 * 109.63121 * 291.40147 * 6 5 4 32 32 H 1.09007 * 109.40628 * 177.87700 * 7 6 5 33 33 H 1.08998 * 109.40712 * 58.11943 * 7 6 5 34 34 H 1.08998 * 109.47490 * 284.02090 * 9 8 7 35 35 H 1.09001 * 109.47066 * 164.02131 * 9 8 7 36 36 H 1.08002 * 119.96460 * 0.02562 * 11 10 9 37 37 H 1.08005 * 120.03545 * 179.97438 * 12 11 10 38 38 H 0.97005 * 119.99347 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.03116 * 179.72180 * 23 13 12 40 40 H 1.08005 * 119.95909 * 180.27000 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8922 1.0281 0.0000 4 6 2.0391 -0.7175 1.2549 5 16 3.8567 -0.6480 1.2621 6 6 4.2629 -1.2668 -0.3995 7 6 3.4476 -0.4737 -1.4265 8 7 2.0167 -0.6875 -1.1983 9 6 1.2322 -0.3050 -2.3799 10 6 1.9048 -0.8315 -3.6214 11 6 1.5830 -2.0884 -4.1004 12 6 2.1980 -2.5738 -5.2376 13 6 3.1410 -1.7987 -5.9000 14 8 3.7477 -2.2734 -7.0178 15 6 3.3088 -3.4543 -7.4979 16 1 2.5663 -4.0170 -6.9516 17 6 3.8106 -3.9464 -8.6931 18 7 3.3819 -5.0985 -9.1619 19 14 5.0944 -2.9729 -9.6384 20 1 6.4513 -3.3766 -9.1897 21 1 4.9007 -1.5224 -9.3859 22 1 4.9519 -3.2457 -11.0912 23 6 3.4662 -0.5393 -5.4132 24 6 2.8438 -0.0574 -4.2785 25 1 -0.3633 -1.0277 -0.0028 26 1 -0.3634 0.5115 0.8913 27 1 -0.3633 0.5163 -0.8887 28 1 1.6501 -0.2210 2.1438 29 1 1.7124 -1.7573 1.2401 30 1 5.3270 -1.1293 -0.5915 31 1 4.0125 -2.3255 -0.4674 32 1 3.7079 -0.8073 -2.4311 33 1 3.6754 0.5876 -1.3282 34 1 1.1655 0.7815 -2.4357 35 1 0.2301 -0.7270 -2.3028 36 1 0.8499 -2.6908 -3.5846 37 1 1.9466 -3.5556 -5.6110 38 1 3.7334 -5.4429 -9.9979 39 1 4.2024 0.0639 -5.9236 40 1 3.0931 0.9237 -3.9020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265671931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:21 Heat of formation + Delta-G solvation = 7.428776 kcal Electronic energy + Delta-G solvation = -21188.307548 eV Core-core repulsion = 18095.082021 eV Total energy + Delta-G solvation = -3093.225527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.73875 -38.61858 -36.58315 -33.05170 -32.47479 -31.59799 -30.33314 -28.72765 -27.48111 -25.71876 -24.18582 -22.92980 -22.00350 -20.75433 -19.89763 -17.95554 -17.32782 -16.90622 -16.13103 -15.66098 -15.01843 -14.76722 -14.42777 -14.20703 -14.03554 -13.84408 -13.60489 -13.37560 -12.86628 -12.71834 -12.61002 -12.44368 -12.27288 -12.21674 -12.09807 -11.77252 -11.45223 -11.30539 -10.99911 -10.79289 -10.73961 -10.51491 -10.18592 -9.77230 -9.44717 -8.92297 -8.42238 -8.32333 -7.79868 -7.37911 -6.47180 -4.14018 1.69000 2.01830 2.08250 2.41634 3.18674 3.21656 3.35805 3.71225 4.18695 4.43718 4.53740 4.76528 4.76887 4.88158 4.98956 5.05228 5.11104 5.12332 5.22220 5.27274 5.38242 5.44301 5.54249 5.56920 5.64595 5.72336 5.79737 5.85097 5.92539 5.98131 6.06349 6.26698 6.48051 6.70609 6.88584 6.93498 7.09447 7.17328 7.25007 7.53156 7.73786 7.97391 8.87688 9.49112 10.60215 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.028250 B = 0.003403 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.903141 B = 8226.269869 C = 8548.708885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 H 0.051 0.949 4 C -0.066 4.066 5 S -0.290 6.290 6 C -0.068 4.068 7 C 0.046 3.954 8 N -0.542 5.542 9 C 0.117 3.883 10 C -0.183 4.183 11 C -0.050 4.050 12 C -0.222 4.222 13 C 0.163 3.837 14 O -0.216 6.216 15 C -0.391 4.391 16 H 0.107 0.893 17 C 0.064 3.936 18 N -0.877 5.877 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.260 1.260 22 H -0.282 1.282 23 C -0.193 4.193 24 C -0.072 4.072 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.042 0.958 34 H 0.035 0.965 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.133 0.867 38 H 0.280 0.720 39 H 0.117 0.883 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.566 10.144 16.978 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 H 0.069 0.931 4 C -0.215 4.215 5 S -0.063 6.063 6 C -0.217 4.217 7 C -0.083 4.083 8 N -0.268 5.268 9 C -0.009 4.009 10 C -0.184 4.184 11 C -0.068 4.068 12 C -0.242 4.242 13 C 0.110 3.890 14 O -0.120 6.120 15 C -0.466 4.466 16 H 0.124 0.876 17 C -0.139 4.139 18 N -0.515 5.515 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.184 1.184 22 H -0.208 1.208 23 C -0.212 4.212 24 C -0.091 4.091 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.109 0.891 30 H 0.123 0.877 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.129 0.871 37 H 0.151 0.849 38 H 0.090 0.910 39 H 0.135 0.865 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.711 9.898 17.569 20.347 hybrid contribution -0.157 0.501 -1.498 1.587 sum -2.868 10.400 16.071 19.356 Atomic orbital electron populations 1.21999 0.93647 1.02979 1.02246 1.21768 0.95713 0.95583 0.89681 0.93068 1.23543 0.92826 1.04737 1.00363 1.86821 1.08507 1.87139 1.23795 1.23536 1.02897 1.03247 0.92012 1.22439 0.87111 0.97975 1.00748 1.61329 1.03318 1.59207 1.02935 1.20845 0.96541 0.97167 0.86362 1.19173 1.03446 0.96840 0.98920 1.20628 0.97617 0.94123 0.94470 1.21291 1.01970 1.02309 0.98593 1.19143 0.90752 0.91981 0.87126 1.83567 1.54348 1.37483 1.36617 1.20778 1.25195 0.93844 1.06784 0.87556 1.24478 0.97904 0.95831 0.95734 1.69648 1.42349 1.18073 1.21401 0.86180 0.81053 0.81285 0.78388 1.19830 1.18356 1.20752 1.20170 1.05935 0.95223 0.99891 1.20506 0.95755 0.98249 0.94545 0.91443 0.92045 0.91709 0.87907 0.89071 0.87706 0.88969 0.87295 0.94012 0.94709 0.90173 0.87116 0.84917 0.90971 0.86525 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.32 37.16 0.31 -0.90 16 2 C 0.08 0.82 2.45 -67.81 -0.17 0.65 16 3 H 0.05 0.54 7.91 -51.93 -0.41 0.13 16 4 C -0.07 -0.64 5.97 37.29 0.22 -0.42 16 5 S -0.29 -3.37 22.39 -107.50 -2.41 -5.78 16 6 C -0.07 -0.80 6.69 37.28 0.25 -0.55 16 7 C 0.05 0.57 4.85 -3.93 -0.02 0.55 16 8 N -0.54 -6.40 4.47 -228.47 -1.02 -7.43 16 9 C 0.12 1.43 4.13 -4.98 -0.02 1.41 16 10 C -0.18 -2.78 4.12 -104.58 -0.43 -3.21 16 11 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 12 C -0.22 -4.60 9.17 -39.39 -0.36 -4.96 16 13 C 0.16 3.60 6.65 -39.11 -0.26 3.34 16 14 O -0.22 -5.54 8.59 0.07 0.00 -5.54 16 15 C -0.39 -10.79 9.95 30.89 0.31 -10.48 16 16 H 0.11 3.00 5.44 -52.49 -0.29 2.71 16 17 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 18 N -0.88 -24.98 13.96 55.48 0.77 -24.20 16 19 Si 0.91 21.31 28.62 -169.99 -4.86 16.44 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.19 -3.61 9.99 -39.39 -0.39 -4.00 16 24 C -0.07 -1.12 7.57 -39.61 -0.30 -1.42 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.52 6.45 -51.93 -0.34 0.19 16 28 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.11 1.53 4.76 -51.93 -0.25 1.28 16 33 H 0.04 0.51 7.91 -51.93 -0.41 0.09 16 34 H 0.03 0.40 7.87 -51.93 -0.41 -0.01 16 35 H 0.08 0.92 6.87 -51.93 -0.36 0.57 16 36 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.13 2.92 5.64 -52.48 -0.30 2.63 16 38 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 40 H 0.11 1.45 8.06 -52.48 -0.42 1.02 16 LS Contribution 328.58 15.07 4.95 4.95 Total: -1.00 -28.16 328.58 -9.60 -37.76 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.69 Total: 3.34 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -1.34 Total: -19.55 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: -0.25 Total: -31.63 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: 0.00 Total: -5.54 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.86 Total: 16.44 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -2.41 Total: -5.78 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.16 -9.60 -37.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265671931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.188 kcal (2) G-P(sol) polarization free energy of solvation -28.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds