Wall clock time and date at job start Tue Mar 31 2020 07:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.40754 * 2 1 4 4 C 1.53256 * 109.40365 * 119.75954 * 2 1 3 5 5 S 1.81894 * 108.50363 * 182.12258 * 4 2 1 6 6 C 1.81900 * 101.91674 * 308.69498 * 5 4 2 7 7 C 1.53244 * 108.50557 * 51.30416 * 6 5 4 8 8 N 1.46468 * 109.86246 * 297.99797 * 7 6 5 9 9 C 1.46902 * 111.00041 * 197.76280 * 8 7 6 10 10 C 1.50694 * 109.47046 * 44.02299 * 9 8 7 11 11 C 1.38301 * 119.93262 * 89.99487 * 10 9 8 12 12 C 1.38100 * 120.06954 * 180.02562 * 11 10 9 13 13 C 1.38880 * 119.93180 * 0.02562 * 12 11 10 14 14 O 1.35753 * 120.06801 * 179.97438 * 13 12 11 15 15 C 1.34821 * 117.00047 * 5.52931 * 14 13 12 16 16 H 1.07994 * 120.00555 * 354.94530 * 15 14 13 17 17 C 1.38658 * 119.99851 * 174.94789 * 15 14 13 18 18 N 1.31558 * 119.99765 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 119.99990 * 359.97438 * 17 15 14 20 20 H 1.48511 * 109.47027 * 90.00420 * 19 17 15 21 21 H 1.48498 * 109.47442 * 330.00675 * 19 17 15 22 22 H 1.48500 * 109.47423 * 210.00317 * 19 17 15 23 23 C 1.38883 * 119.86060 * 0.24761 * 13 12 11 24 24 C 1.38096 * 119.92664 * 359.50043 * 23 13 12 25 25 H 1.09002 * 109.47122 * 179.84202 * 1 2 3 26 26 H 1.08998 * 109.47283 * 299.84871 * 1 2 3 27 27 H 1.09007 * 109.46550 * 59.84375 * 1 2 3 28 28 H 1.08995 * 109.62867 * 301.83094 * 4 2 1 29 29 H 1.08999 * 109.62744 * 62.41879 * 4 2 1 30 30 H 1.08997 * 109.63366 * 171.01677 * 6 5 4 31 31 H 1.09005 * 109.63121 * 291.40147 * 6 5 4 32 32 H 1.09007 * 109.40628 * 177.87700 * 7 6 5 33 33 H 1.08998 * 109.40712 * 58.11943 * 7 6 5 34 34 H 1.08998 * 109.47490 * 284.02090 * 9 8 7 35 35 H 1.09001 * 109.47066 * 164.02131 * 9 8 7 36 36 H 1.08002 * 119.96460 * 0.02562 * 11 10 9 37 37 H 1.08005 * 120.03545 * 179.97438 * 12 11 10 38 38 H 0.97005 * 119.99347 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.03116 * 179.72180 * 23 13 12 40 40 H 1.08005 * 119.95909 * 180.27000 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8922 1.0281 0.0000 4 6 2.0391 -0.7175 1.2549 5 16 3.8567 -0.6480 1.2621 6 6 4.2629 -1.2668 -0.3995 7 6 3.4476 -0.4737 -1.4265 8 7 2.0167 -0.6875 -1.1983 9 6 1.2322 -0.3050 -2.3799 10 6 1.9048 -0.8315 -3.6214 11 6 1.5830 -2.0884 -4.1004 12 6 2.1980 -2.5738 -5.2376 13 6 3.1410 -1.7987 -5.9000 14 8 3.7477 -2.2734 -7.0178 15 6 3.3088 -3.4543 -7.4979 16 1 2.5663 -4.0170 -6.9516 17 6 3.8106 -3.9464 -8.6931 18 7 3.3819 -5.0985 -9.1619 19 14 5.0944 -2.9729 -9.6384 20 1 6.4513 -3.3766 -9.1897 21 1 4.9007 -1.5224 -9.3859 22 1 4.9519 -3.2457 -11.0912 23 6 3.4662 -0.5393 -5.4132 24 6 2.8438 -0.0574 -4.2785 25 1 -0.3633 -1.0277 -0.0028 26 1 -0.3634 0.5115 0.8913 27 1 -0.3633 0.5163 -0.8887 28 1 1.6501 -0.2210 2.1438 29 1 1.7124 -1.7573 1.2401 30 1 5.3270 -1.1293 -0.5915 31 1 4.0125 -2.3255 -0.4674 32 1 3.7079 -0.8073 -2.4311 33 1 3.6754 0.5876 -1.3282 34 1 1.1655 0.7815 -2.4357 35 1 0.2301 -0.7270 -2.3028 36 1 0.8499 -2.6908 -3.5846 37 1 1.9466 -3.5556 -5.6110 38 1 3.7334 -5.4429 -9.9979 39 1 4.2024 0.0639 -5.9236 40 1 3.0931 0.9237 -3.9020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265671931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:20 Heat of formation + Delta-G solvation = -8.654676 kcal Electronic energy + Delta-G solvation = -21189.004979 eV Core-core repulsion = 18095.082021 eV Total energy + Delta-G solvation = -3093.922958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13791 -39.91232 -38.04173 -34.52821 -33.86849 -32.78819 -31.81975 -29.99099 -28.19029 -27.47528 -25.50020 -24.09173 -23.33342 -22.06674 -20.88880 -19.82818 -19.09443 -17.79500 -17.04928 -16.84636 -16.57377 -15.99559 -15.82849 -15.58577 -15.41223 -15.20045 -14.79637 -14.62189 -14.29054 -14.13677 -14.03128 -13.59207 -13.31175 -13.08873 -13.02369 -13.02105 -12.73270 -12.46093 -12.38769 -12.28379 -12.04508 -11.90596 -11.54396 -11.28010 -10.90175 -10.65776 -9.79443 -9.36585 -8.95283 -8.70808 -8.50867 -6.23562 0.53781 0.58502 0.84065 1.31229 1.35247 1.50974 1.55894 2.27086 2.62347 2.88785 3.08050 3.20870 3.76373 3.82230 3.94105 4.03196 4.14010 4.17618 4.20686 4.26674 4.40693 4.45894 4.53813 4.55398 4.68162 4.75906 4.81083 4.85490 4.88711 4.95785 4.98910 5.09463 5.23799 5.31614 5.38097 5.54680 5.73517 5.80249 5.89149 6.02714 6.14220 6.23872 6.83461 7.57611 8.60694 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.028250 B = 0.003403 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.903141 B = 8226.269869 C = 8548.708885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.085 3.915 3 H 0.053 0.947 4 C -0.058 4.058 5 S -0.313 6.313 6 C -0.065 4.065 7 C 0.051 3.949 8 N -0.551 5.551 9 C 0.120 3.880 10 C -0.152 4.152 11 C -0.052 4.052 12 C -0.237 4.237 13 C 0.123 3.877 14 O -0.245 6.245 15 C -0.399 4.399 16 H 0.081 0.919 17 C 0.010 3.990 18 N -0.923 5.923 19 Si 0.971 3.029 20 H -0.266 1.266 21 H -0.262 1.262 22 H -0.268 1.268 23 C -0.191 4.191 24 C -0.060 4.060 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.124 0.876 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.131 0.869 37 H 0.106 0.894 38 H 0.285 0.715 39 H 0.128 0.872 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.125 13.049 19.302 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.025 4.025 3 H 0.070 0.930 4 C -0.207 4.207 5 S -0.086 6.086 6 C -0.214 4.214 7 C -0.079 4.079 8 N -0.277 5.277 9 C -0.006 4.006 10 C -0.153 4.153 11 C -0.070 4.070 12 C -0.257 4.257 13 C 0.074 3.926 14 O -0.152 6.152 15 C -0.475 4.475 16 H 0.098 0.902 17 C -0.188 4.188 18 N -0.564 5.564 19 Si 0.793 3.207 20 H -0.191 1.191 21 H -0.186 1.186 22 H -0.193 1.193 23 C -0.210 4.210 24 C -0.078 4.078 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.142 0.858 29 H 0.106 0.894 30 H 0.129 0.871 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.149 0.851 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.146 0.854 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.289 12.827 19.942 23.938 hybrid contribution -0.141 -0.245 -1.828 1.850 sum -3.430 12.582 18.114 22.320 Atomic orbital electron populations 1.21987 0.91936 1.03159 1.03424 1.21823 0.96941 0.95220 0.88497 0.92955 1.23622 0.90849 1.04895 1.01308 1.86930 1.10893 1.86997 1.23742 1.23473 1.03338 1.02473 0.92105 1.22347 0.87570 0.98287 0.99663 1.61306 1.02970 1.59994 1.03392 1.20889 0.96703 0.98271 0.84778 1.19615 1.01349 0.95279 0.99065 1.20856 0.97624 0.95278 0.93287 1.21273 1.02796 1.01476 1.00133 1.19682 0.92196 0.93757 0.87000 1.83509 1.56112 1.36901 1.38709 1.20700 1.24980 0.94793 1.07075 0.90182 1.25282 1.00058 0.96856 0.96618 1.69734 1.44463 1.19781 1.22409 0.85218 0.78540 0.79431 0.77538 1.19099 1.18601 1.19290 1.20469 1.06048 0.93835 1.00624 1.20912 0.94427 0.99577 0.92909 0.91731 0.90175 0.91348 0.85830 0.89393 0.87130 0.90092 0.89224 0.93303 0.92716 0.88782 0.85080 0.87658 0.90571 0.85427 0.83462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.32 71.98 0.60 -1.11 16 2 C 0.08 1.33 2.45 45.08 0.11 1.44 16 3 H 0.05 0.86 7.91 -2.39 -0.02 0.84 16 4 C -0.06 -0.94 5.97 72.07 0.43 -0.51 16 5 S -0.31 -6.57 22.39 -56.49 -1.27 -7.83 16 6 C -0.07 -1.41 6.69 72.06 0.48 -0.93 16 7 C 0.05 1.09 4.85 86.47 0.42 1.51 16 8 N -0.55 -11.01 4.47 -876.74 -3.92 -14.92 16 9 C 0.12 2.39 4.13 85.55 0.35 2.75 16 10 C -0.15 -4.16 4.12 -19.84 -0.08 -4.24 16 11 C -0.05 -1.72 9.69 22.25 0.22 -1.50 16 12 C -0.24 -10.18 9.17 22.39 0.21 -9.97 16 13 C 0.12 5.59 6.65 22.58 0.15 5.74 16 14 O -0.24 -13.14 8.59 -22.68 -0.19 -13.34 16 15 C -0.40 -23.41 9.95 67.92 0.68 -22.74 16 16 H 0.08 4.93 5.44 -2.91 -0.02 4.92 16 17 C 0.01 0.59 5.49 84.83 0.47 1.06 16 18 N -0.92 -55.08 13.96 21.61 0.30 -54.78 16 19 Si 0.97 45.17 28.62 68.60 1.96 47.14 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 C -0.19 -6.91 9.99 22.39 0.22 -6.68 16 24 C -0.06 -1.68 7.57 22.25 0.17 -1.51 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 0.77 6.45 -2.38 -0.02 0.76 16 28 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.09 2.27 4.76 -2.38 -0.01 2.26 16 33 H 0.05 1.00 7.91 -2.39 -0.02 0.98 16 34 H 0.05 0.95 7.87 -2.39 -0.02 0.93 16 35 H 0.09 1.72 6.87 -2.39 -0.02 1.70 16 36 H 0.13 3.78 8.06 -2.91 -0.02 3.75 16 37 H 0.11 5.05 5.64 -2.91 -0.02 5.03 16 38 H 0.28 15.57 8.31 -92.70 -0.77 14.80 16 39 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 40 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -64.51 328.58 2.34 -62.17 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 1.03 Total: 18.25 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 4.42 Total: -36.69 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: -3.62 Total: -69.70 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.19 Total: -13.34 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.96 Total: 47.14 kcal Atomic # 16 Polarization: -6.57 SS G_CDS: -1.27 Total: -7.83 kcal Total: -64.51 2.34 -62.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265671931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.515 kcal (2) G-P(sol) polarization free energy of solvation -64.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds