Wall clock time and date at job start Tue Mar 31 2020 06:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46567 * 2 1 4 4 H 1.08991 * 109.47560 * 305.00370 * 3 2 1 5 5 C 1.53001 * 109.46863 * 184.99865 * 3 2 1 6 6 S 1.81402 * 109.47224 * 180.02562 * 5 3 2 7 7 C 1.81395 * 103.00076 * 180.02562 * 6 5 3 8 8 N 1.46505 * 109.47058 * 65.00535 * 3 2 1 9 9 C 1.34775 * 119.99707 * 274.99570 * 8 3 2 10 10 O 1.21587 * 119.99954 * 0.02562 * 9 8 3 11 11 C 1.47636 * 120.00055 * 179.97438 * 9 8 3 12 12 C 1.40011 * 119.89522 * 359.72620 * 11 9 8 13 13 C 1.36314 * 120.11010 * 179.75757 * 12 11 9 14 14 C 1.40889 * 119.89158 * 0.51624 * 13 12 11 15 15 C 1.41110 * 120.10887 * 179.71984 * 14 13 12 16 16 H 1.07991 * 120.00252 * 155.08383 * 15 14 13 17 17 C 1.40226 * 119.99518 * 335.08027 * 15 14 13 18 18 N 1.30645 * 120.00490 * 342.20888 * 17 15 14 19 19 Si 1.86806 * 119.99877 * 162.20574 * 17 15 14 20 20 H 1.48503 * 109.47165 * 94.66338 * 19 17 15 21 21 H 1.48504 * 109.47099 * 214.66301 * 19 17 15 22 22 H 1.48501 * 109.46845 * 334.66419 * 19 17 15 23 23 C 1.40891 * 119.79145 * 359.73626 * 14 13 12 24 24 C 1.36319 * 119.89180 * 0.02562 * 23 14 13 25 25 H 1.09003 * 109.47027 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47699 * 59.99818 * 1 2 3 27 27 H 1.09007 * 109.47366 * 299.99270 * 1 2 3 28 28 H 1.08991 * 109.47297 * 119.99962 * 2 1 3 29 29 H 1.08999 * 109.47044 * 240.00802 * 2 1 3 30 30 H 1.09001 * 109.47366 * 300.00482 * 5 3 2 31 31 H 1.09006 * 109.46800 * 60.00566 * 5 3 2 32 32 H 1.09006 * 109.46835 * 180.02562 * 7 6 5 33 33 H 1.09004 * 109.46632 * 299.99874 * 7 6 5 34 34 H 1.08989 * 109.47514 * 59.99931 * 7 6 5 35 35 H 0.97001 * 120.00087 * 94.99217 * 8 3 2 36 36 H 1.08004 * 119.94738 * 0.02562 * 12 11 9 37 37 H 1.08002 * 120.06176 * 180.23242 * 13 12 11 38 38 H 0.96998 * 120.00739 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.05195 * 179.97438 * 23 14 13 40 40 H 1.07992 * 119.94733 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 3.5647 1.4445 -0.1257 6 16 4.1694 3.1548 -0.1249 7 6 5.9654 2.9527 -0.2798 8 7 1.6523 2.0975 1.2519 9 6 0.4350 2.6643 1.3671 10 8 -0.3417 2.6317 0.4322 11 6 0.0442 3.3238 2.6288 12 6 0.9377 3.3541 3.7063 13 6 0.5833 3.9661 4.8716 14 6 -0.6887 4.5594 4.9945 15 6 -1.0626 5.1890 6.2007 16 1 -1.8143 5.9643 6.1948 17 6 -0.4580 4.8078 7.4072 18 7 0.1754 3.6681 7.4890 19 14 -0.5581 5.9298 8.8974 20 1 -1.7065 5.5234 9.7468 21 1 0.6988 5.8250 9.6813 22 1 -0.7463 7.3329 8.4489 23 6 -1.5864 4.5217 3.9093 24 6 -1.2212 3.9116 2.7463 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 0.5137 0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 3.9994 0.9054 0.7161 31 1 3.8531 0.9572 -1.0572 32 1 6.4418 3.9331 -0.2897 33 1 6.3402 2.3754 0.5654 34 1 6.1933 2.4282 -1.2076 35 1 2.2718 2.1231 1.9979 36 1 1.9111 2.8956 3.6126 37 1 1.2746 3.9923 5.7010 38 1 0.5939 3.4046 8.3235 39 1 -2.5627 4.9748 3.9990 40 1 -1.9087 3.8819 1.9140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271788029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:32 Heat of formation + Delta-G solvation = -36.588376 kcal Electronic energy + Delta-G solvation = -20890.696428 eV Core-core repulsion = 17795.562174 eV Total energy + Delta-G solvation = -3095.134254 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.39459 -37.32269 -35.69713 -33.83075 -32.07737 -30.30398 -29.66945 -29.37962 -28.89394 -25.87212 -23.78954 -22.20884 -21.02541 -20.47129 -19.61992 -17.48599 -16.85325 -16.22728 -16.05627 -15.40245 -14.99641 -14.10759 -14.08679 -13.94588 -13.86928 -13.61177 -13.20500 -12.98755 -12.90061 -12.76654 -12.60950 -12.06569 -11.96990 -11.73087 -11.36213 -11.22597 -11.15747 -10.96033 -10.89878 -10.70159 -10.54113 -10.02066 -10.01176 -9.51957 -9.30710 -8.87542 -8.50489 -7.71980 -7.66876 -7.49315 -7.00192 -4.56344 1.54309 2.28671 2.50096 2.92725 2.96484 3.03042 3.08241 3.76483 3.79632 3.92390 4.55935 4.61463 4.90678 4.95132 4.98300 5.19099 5.27651 5.37633 5.51477 5.58384 5.62388 5.81884 5.99866 6.10469 6.13328 6.17372 6.36176 6.39412 6.72647 6.80998 6.86389 7.00047 7.11065 7.17906 7.47948 7.70086 7.84097 7.90355 8.11393 8.30767 8.44087 8.67190 8.79677 9.15503 9.92005 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.018111 B = 0.003823 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.616605 B = 7323.271419 C = 8196.883147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C 0.164 3.836 4 H 0.093 0.907 5 C -0.098 4.098 6 S -0.238 6.238 7 C -0.130 4.130 8 N -0.731 5.731 9 C 0.576 3.424 10 O -0.570 6.570 11 C -0.282 4.282 12 C -0.060 4.060 13 C -0.178 4.178 14 C 0.129 3.871 15 C -0.445 4.445 16 H 0.084 0.916 17 C 0.076 3.924 18 N -0.773 5.773 19 Si 0.911 3.089 20 H -0.268 1.268 21 H -0.273 1.273 22 H -0.257 1.257 23 C -0.239 4.239 24 C -0.022 4.022 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.398 0.602 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.286 0.714 39 H 0.097 0.903 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.709 -5.164 -8.137 13.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.058 3.942 4 H 0.111 0.889 5 C -0.247 4.247 6 S -0.012 6.012 7 C -0.299 4.299 8 N -0.385 5.385 9 C 0.371 3.629 10 O -0.452 6.452 11 C -0.286 4.286 12 C -0.080 4.080 13 C -0.198 4.198 14 C 0.126 3.874 15 C -0.472 4.472 16 H 0.102 0.898 17 C -0.145 4.145 18 N -0.397 5.397 19 Si 0.735 3.265 20 H -0.193 1.193 21 H -0.198 1.198 22 H -0.181 1.181 23 C -0.259 4.259 24 C -0.042 4.042 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.234 0.766 36 H 0.106 0.894 37 H 0.137 0.863 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.750 -4.397 -8.560 13.006 hybrid contribution 1.195 -0.816 1.062 1.795 sum 9.945 -5.214 -7.498 13.502 Atomic orbital electron populations 1.21787 0.94220 1.00194 1.03915 1.21931 0.97758 0.95366 1.01619 1.20569 0.89860 0.93992 0.89807 0.88889 1.23827 0.99389 0.96164 1.05322 1.87501 1.04661 1.11796 1.97233 1.23409 0.95738 1.06296 1.04452 1.45924 1.17781 1.59423 1.15344 1.18472 0.80075 0.76322 0.88058 1.90636 1.51741 1.61493 1.41325 1.18909 0.98783 1.16619 0.94286 1.20470 0.96361 0.97740 0.93385 1.20960 0.97284 1.04657 0.96865 1.17777 0.90276 0.87484 0.91862 1.19832 1.18867 1.17435 0.91114 0.89788 1.26077 0.92757 0.94574 1.01138 1.69744 1.24045 1.17676 1.28208 0.86239 0.78817 0.81476 0.79992 1.19278 1.19769 1.18091 1.20714 0.99520 1.10105 0.95535 1.20354 0.93916 0.93772 0.96124 0.93964 0.92241 0.91461 0.91922 0.91745 0.89719 0.89054 0.88170 0.90634 0.90834 0.76624 0.89370 0.86319 0.90326 0.88488 0.88165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.51 37.16 0.32 -1.84 16 2 C -0.13 -1.56 5.61 -26.73 -0.15 -1.71 16 3 C 0.16 2.25 2.31 -67.92 -0.16 2.09 16 4 H 0.09 1.48 7.58 -51.93 -0.39 1.08 16 5 C -0.10 -1.05 5.50 37.16 0.20 -0.84 16 6 S -0.24 -2.98 21.96 -107.50 -2.36 -5.35 16 7 C -0.13 -1.11 10.76 101.05 1.09 -0.02 16 8 N -0.73 -12.09 4.51 -54.81 -0.25 -12.33 16 9 C 0.58 11.96 6.33 -12.42 -0.08 11.89 16 10 O -0.57 -12.93 13.45 5.29 0.07 -12.86 16 11 C -0.28 -6.44 5.89 -104.73 -0.62 -7.05 16 12 C -0.06 -1.35 9.47 -39.61 -0.38 -1.73 16 13 C -0.18 -4.41 8.63 -39.27 -0.34 -4.75 16 14 C 0.13 3.32 5.57 -106.80 -0.60 2.73 16 15 C -0.44 -11.18 9.04 -37.75 -0.34 -11.52 16 16 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 17 C 0.08 1.77 5.13 -17.31 -0.09 1.69 16 18 N -0.77 -18.65 10.97 55.56 0.61 -18.04 16 19 Si 0.91 17.40 29.60 -169.99 -5.03 12.37 16 20 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 21 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 22 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 23 C -0.24 -5.85 9.73 -39.27 -0.38 -6.23 16 24 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.94 7.84 -51.93 -0.41 0.54 16 27 H 0.07 1.23 5.64 -51.93 -0.29 0.94 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.81 8.14 -51.92 -0.42 0.38 16 31 H 0.09 0.80 8.14 -51.92 -0.42 0.37 16 32 H 0.10 0.79 8.14 -51.92 -0.42 0.36 16 33 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.40 6.18 6.60 -40.82 -0.27 5.91 16 36 H 0.09 1.70 6.37 -52.48 -0.33 1.37 16 37 H 0.12 2.98 6.17 -52.49 -0.32 2.65 16 38 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 39 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 40 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 LS Contribution 341.07 15.07 5.14 5.14 Total: -1.00 -27.94 341.07 -9.49 -37.43 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -5.78 Total: 11.85 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -1.89 Total: -18.22 kcal Atomic # 7 Polarization: -30.73 SS G_CDS: 0.36 Total: -30.37 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.07 Total: -12.86 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Atomic # 16 Polarization: -2.98 SS G_CDS: -2.36 Total: -5.35 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.94 -9.49 -37.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271788029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.845 kcal (2) G-P(sol) polarization free energy of solvation -27.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds