Wall clock time and date at job start Tue Mar 31 2020 06:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46567 * 2 1 4 4 H 1.08991 * 109.47560 * 305.00370 * 3 2 1 5 5 C 1.53001 * 109.46863 * 184.99865 * 3 2 1 6 6 S 1.81402 * 109.47224 * 180.02562 * 5 3 2 7 7 C 1.81395 * 103.00076 * 180.02562 * 6 5 3 8 8 N 1.46505 * 109.47058 * 65.00535 * 3 2 1 9 9 C 1.34775 * 119.99707 * 274.99570 * 8 3 2 10 10 O 1.21587 * 119.99954 * 0.02562 * 9 8 3 11 11 C 1.47636 * 120.00055 * 179.97438 * 9 8 3 12 12 C 1.40011 * 119.89522 * 359.72620 * 11 9 8 13 13 C 1.36314 * 120.11010 * 179.75757 * 12 11 9 14 14 C 1.40889 * 119.89158 * 0.51624 * 13 12 11 15 15 C 1.41110 * 120.10887 * 179.71984 * 14 13 12 16 16 H 1.07991 * 120.00252 * 155.08383 * 15 14 13 17 17 C 1.40226 * 119.99518 * 335.08027 * 15 14 13 18 18 N 1.30645 * 120.00490 * 342.20888 * 17 15 14 19 19 Si 1.86806 * 119.99877 * 162.20574 * 17 15 14 20 20 H 1.48503 * 109.47165 * 94.66338 * 19 17 15 21 21 H 1.48504 * 109.47099 * 214.66301 * 19 17 15 22 22 H 1.48501 * 109.46845 * 334.66419 * 19 17 15 23 23 C 1.40891 * 119.79145 * 359.73626 * 14 13 12 24 24 C 1.36319 * 119.89180 * 0.02562 * 23 14 13 25 25 H 1.09003 * 109.47027 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47699 * 59.99818 * 1 2 3 27 27 H 1.09007 * 109.47366 * 299.99270 * 1 2 3 28 28 H 1.08991 * 109.47297 * 119.99962 * 2 1 3 29 29 H 1.08999 * 109.47044 * 240.00802 * 2 1 3 30 30 H 1.09001 * 109.47366 * 300.00482 * 5 3 2 31 31 H 1.09006 * 109.46800 * 60.00566 * 5 3 2 32 32 H 1.09006 * 109.46835 * 180.02562 * 7 6 5 33 33 H 1.09004 * 109.46632 * 299.99874 * 7 6 5 34 34 H 1.08989 * 109.47514 * 59.99931 * 7 6 5 35 35 H 0.97001 * 120.00087 * 94.99217 * 8 3 2 36 36 H 1.08004 * 119.94738 * 0.02562 * 12 11 9 37 37 H 1.08002 * 120.06176 * 180.23242 * 13 12 11 38 38 H 0.96998 * 120.00739 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.05195 * 179.97438 * 23 14 13 40 40 H 1.07992 * 119.94733 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 3.5647 1.4445 -0.1257 6 16 4.1694 3.1548 -0.1249 7 6 5.9654 2.9527 -0.2798 8 7 1.6523 2.0975 1.2519 9 6 0.4350 2.6643 1.3671 10 8 -0.3417 2.6317 0.4322 11 6 0.0442 3.3238 2.6288 12 6 0.9377 3.3541 3.7063 13 6 0.5833 3.9661 4.8716 14 6 -0.6887 4.5594 4.9945 15 6 -1.0626 5.1890 6.2007 16 1 -1.8143 5.9643 6.1948 17 6 -0.4580 4.8078 7.4072 18 7 0.1754 3.6681 7.4890 19 14 -0.5581 5.9298 8.8974 20 1 -1.7065 5.5234 9.7468 21 1 0.6988 5.8250 9.6813 22 1 -0.7463 7.3329 8.4489 23 6 -1.5864 4.5217 3.9093 24 6 -1.2212 3.9116 2.7463 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 0.5137 0.8901 28 1 1.8933 -0.5138 0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 3.9994 0.9054 0.7161 31 1 3.8531 0.9572 -1.0572 32 1 6.4418 3.9331 -0.2897 33 1 6.3402 2.3754 0.5654 34 1 6.1933 2.4282 -1.2076 35 1 2.2718 2.1231 1.9979 36 1 1.9111 2.8956 3.6126 37 1 1.2746 3.9923 5.7010 38 1 0.5939 3.4046 8.3235 39 1 -2.5627 4.9748 3.9990 40 1 -1.9087 3.8819 1.9140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271788029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:31 Heat of formation + Delta-G solvation = -51.103431 kcal Electronic energy + Delta-G solvation = -20891.325848 eV Core-core repulsion = 17795.562174 eV Total energy + Delta-G solvation = -3095.763674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.95780 -39.07014 -37.09653 -35.64007 -33.50718 -31.79443 -31.29422 -30.87254 -29.65099 -27.64936 -24.92315 -23.84407 -22.80759 -21.83406 -21.20984 -19.34371 -18.39533 -17.56135 -17.19187 -17.00088 -16.33776 -15.73590 -15.55089 -15.15139 -14.92669 -14.72917 -14.59152 -14.49048 -14.18261 -13.83840 -13.78761 -13.66875 -13.59364 -13.16656 -12.89446 -12.82586 -12.61799 -12.34773 -12.29657 -11.95391 -11.78512 -11.74164 -11.35026 -11.09507 -10.87766 -10.56568 -9.91402 -9.54585 -9.37406 -8.77553 -8.66818 -6.46154 0.49280 0.71920 1.16968 1.39092 1.43141 1.55197 1.71711 2.15827 2.22198 2.44656 2.83109 3.56501 3.71955 4.02540 4.11696 4.30753 4.32517 4.33304 4.37615 4.38299 4.46778 4.52150 4.57482 4.84142 4.91107 4.93894 4.95996 5.02973 5.04724 5.18588 5.22654 5.32669 5.49920 5.60331 5.69937 5.85418 5.97222 6.01827 6.25064 6.56112 6.77544 6.79631 6.91604 7.55150 8.18088 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.018111 B = 0.003823 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.616605 B = 7323.271419 C = 8196.883147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C 0.161 3.839 4 H 0.068 0.932 5 C -0.076 4.076 6 S -0.323 6.323 7 C -0.109 4.109 8 N -0.716 5.716 9 C 0.577 3.423 10 O -0.594 6.594 11 C -0.290 4.290 12 C -0.052 4.052 13 C -0.198 4.198 14 C 0.102 3.898 15 C -0.478 4.478 16 H 0.083 0.917 17 C 0.040 3.960 18 N -0.800 5.800 19 Si 0.986 3.014 20 H -0.261 1.261 21 H -0.261 1.261 22 H -0.258 1.258 23 C -0.254 4.254 24 C -0.034 4.034 25 H 0.060 0.940 26 H 0.042 0.958 27 H 0.029 0.971 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.404 0.596 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.296 0.704 39 H 0.102 0.898 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.004 -6.421 -8.064 15.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 C 0.056 3.944 4 H 0.087 0.913 5 C -0.225 4.225 6 S -0.097 6.097 7 C -0.277 4.277 8 N -0.368 5.368 9 C 0.370 3.630 10 O -0.477 6.477 11 C -0.294 4.294 12 C -0.071 4.071 13 C -0.217 4.217 14 C 0.099 3.901 15 C -0.505 4.505 16 H 0.102 0.898 17 C -0.179 4.179 18 N -0.423 5.423 19 Si 0.806 3.194 20 H -0.186 1.186 21 H -0.185 1.185 22 H -0.182 1.182 23 C -0.274 4.274 24 C -0.053 4.053 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.094 0.906 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.138 0.862 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.241 0.759 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.078 -5.683 -8.505 15.079 hybrid contribution 0.519 -0.497 0.924 1.171 sum 11.598 -6.180 -7.581 15.172 Atomic orbital electron populations 1.21728 0.96494 1.00525 1.01215 1.21906 0.95553 0.94551 1.03925 1.20745 0.92207 0.94211 0.87256 0.91337 1.23727 0.96481 0.94608 1.07655 1.87822 1.09563 1.14790 1.97538 1.23411 0.91333 1.07072 1.05921 1.45782 1.16139 1.58142 1.16692 1.18187 0.81283 0.76581 0.86949 1.90622 1.52840 1.62498 1.41784 1.19254 0.98504 1.16146 0.95539 1.20697 0.97461 0.96667 0.92287 1.20989 0.97081 1.06033 0.97578 1.18117 0.91043 0.88354 0.92608 1.20092 1.20167 1.18195 0.92073 0.89842 1.26896 0.91825 0.95703 1.03506 1.69761 1.24141 1.18798 1.29642 0.85131 0.79311 0.78971 0.76030 1.18567 1.18504 1.18183 1.20851 0.99877 1.10801 0.95829 1.20497 0.94726 0.94091 0.95998 0.92098 0.93854 0.95220 0.90604 0.88281 0.87736 0.86205 0.87767 0.89368 0.89034 0.75890 0.86235 0.86990 0.89237 0.87995 0.88047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 8.51 71.98 0.61 -3.53 16 2 C -0.12 -2.61 5.61 30.60 0.17 -2.44 16 3 C 0.16 4.12 2.31 44.99 0.10 4.22 16 4 H 0.07 2.14 7.58 -2.39 -0.02 2.12 16 5 C -0.08 -1.38 5.50 71.98 0.40 -0.99 16 6 S -0.32 -7.55 21.96 -56.49 -1.24 -8.79 16 7 C -0.11 -1.52 10.76 113.37 1.22 -0.30 16 8 N -0.72 -22.93 4.51 -445.59 -2.01 -24.94 16 9 C 0.58 24.18 6.33 86.73 0.55 24.73 16 10 O -0.59 -27.56 13.45 -3.99 -0.05 -27.61 16 11 C -0.29 -13.50 5.89 -19.93 -0.12 -13.62 16 12 C -0.05 -2.35 9.47 22.25 0.21 -2.14 16 13 C -0.20 -9.98 8.63 22.47 0.19 -9.78 16 14 C 0.10 5.42 5.57 -21.28 -0.12 5.30 16 15 C -0.48 -24.67 9.04 23.46 0.21 -24.46 16 16 H 0.08 4.15 7.91 -2.92 -0.02 4.12 16 17 C 0.04 1.86 5.13 85.35 0.44 2.30 16 18 N -0.80 -38.72 10.97 21.87 0.24 -38.48 16 19 Si 0.99 35.33 29.60 68.60 2.03 37.36 16 20 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 21 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 22 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 23 C -0.25 -12.95 9.73 22.47 0.22 -12.73 16 24 C -0.03 -1.67 9.52 22.25 0.21 -1.46 16 25 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.04 1.37 7.84 -2.39 -0.02 1.35 16 27 H 0.03 1.07 5.64 -2.38 -0.01 1.06 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 0.97 8.14 -2.40 -0.02 0.95 16 35 H 0.40 11.88 6.60 -92.71 -0.61 11.27 16 36 H 0.12 4.48 6.37 -2.91 -0.02 4.46 16 37 H 0.11 5.73 6.17 -2.91 -0.02 5.71 16 38 H 0.30 12.71 8.29 -92.71 -0.77 11.94 16 39 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 40 H 0.10 4.86 7.63 -2.91 -0.02 4.84 16 Total: -1.00 -63.36 341.07 3.70 -59.66 By element: Atomic # 1 Polarization: 37.29 SS G_CDS: 0.43 Total: 37.71 kcal Atomic # 6 Polarization: -39.21 SS G_CDS: 4.30 Total: -34.90 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -1.77 Total: -63.42 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.05 Total: -27.61 kcal Atomic # 14 Polarization: 35.33 SS G_CDS: 2.03 Total: 37.36 kcal Atomic # 16 Polarization: -7.55 SS G_CDS: -1.24 Total: -8.79 kcal Total: -63.36 3.70 -59.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271788029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.559 kcal (2) G-P(sol) polarization free energy of solvation -63.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds