Wall clock time and date at job start Tue Mar 31 2020 07:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.50785 * 2 1 4 4 C 1.53156 * 109.51023 * 120.09239 * 2 1 3 5 5 C 1.53089 * 108.98204 * 190.82391 * 4 2 1 6 6 C 1.51716 * 108.74616 * 309.87667 * 5 4 2 7 7 S 1.70753 * 124.55215 * 196.64312 * 6 5 4 8 8 C 1.75613 * 91.77209 * 179.97438 * 7 6 5 9 9 C 1.46582 * 125.45477 * 180.02562 * 8 7 6 10 10 O 1.21701 * 119.99931 * 179.97438 * 9 8 7 11 11 N 1.34774 * 120.00074 * 359.94597 * 9 8 7 12 12 C 1.46501 * 120.00264 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47472 * 180.02562 * 12 11 9 14 14 C 1.50703 * 109.47415 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99674 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00216 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99906 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00032 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47370 * 90.00296 * 18 16 14 20 20 H 1.48504 * 109.47247 * 210.00427 * 18 16 14 21 21 H 1.48507 * 109.47066 * 330.00116 * 18 16 14 22 22 C 1.36113 * 109.09087 * 359.97438 * 8 7 6 23 23 C 1.35231 * 124.33221 * 16.61877 * 6 5 4 24 24 C 1.52328 * 123.00124 * 359.97438 * 23 6 5 25 25 H 1.09004 * 109.47329 * 299.90277 * 1 2 3 26 26 H 1.08994 * 109.47440 * 59.90849 * 1 2 3 27 27 H 1.09003 * 109.47136 * 179.90896 * 1 2 3 28 28 H 1.08999 * 109.55194 * 70.96960 * 4 2 1 29 29 H 1.08999 * 109.54926 * 310.67453 * 4 2 1 30 30 H 1.09003 * 109.58588 * 190.10096 * 5 4 2 31 31 H 1.09000 * 109.59621 * 69.66275 * 5 4 2 32 32 H 0.96998 * 120.00144 * 0.02562 * 11 9 8 33 33 H 1.09001 * 109.47000 * 300.00348 * 12 11 9 34 34 H 1.08998 * 109.47357 * 59.99741 * 12 11 9 35 35 H 1.09009 * 109.46779 * 299.99669 * 13 12 11 36 36 H 1.08994 * 109.47561 * 59.99806 * 13 12 11 37 37 H 0.97004 * 119.99942 * 180.02562 * 17 16 14 38 38 H 1.07994 * 122.95206 * 180.26539 * 22 8 7 39 39 H 1.08999 * 109.58318 * 137.12994 * 24 23 6 40 40 H 1.08994 * 109.58673 * 257.53831 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0415 -0.7238 1.2490 5 6 3.5481 -0.4859 1.3806 6 6 4.2096 -0.8027 0.0525 7 16 5.8829 -1.0707 -0.1564 8 6 5.6807 -1.3355 -1.8807 9 6 6.7576 -1.6461 -2.8253 10 8 6.5042 -1.8115 -4.0040 11 7 8.0286 -1.7478 -2.3885 12 6 9.1051 -2.0577 -3.3327 13 6 10.4385 -2.1159 -2.5848 14 6 11.5459 -2.4340 -3.5561 15 1 11.3210 -2.5805 -4.6023 16 6 12.8459 -2.5391 -3.1092 17 7 13.8122 -2.8172 -3.9568 18 14 13.2348 -2.2864 -1.2997 19 1 13.1477 -3.5869 -0.5883 20 1 14.6074 -1.7369 -1.1603 21 1 12.2584 -1.3342 -0.7118 22 6 4.3636 -1.2072 -2.1993 23 6 3.5485 -0.9104 -1.1223 24 6 2.0419 -0.7233 -1.2468 25 1 -0.3634 0.5123 0.8909 26 1 -0.3634 0.5152 -0.8891 27 1 -0.3633 -1.0277 -0.0016 28 1 1.8477 -1.7924 1.1565 29 1 1.5323 -0.3343 2.1305 30 1 3.9544 -1.1358 2.1556 31 1 3.7322 0.5564 1.6412 32 1 8.2306 -1.6159 -1.4490 33 1 8.9100 -3.0218 -3.8024 34 1 9.1510 -1.2833 -4.0983 35 1 10.6338 -1.1519 -2.1148 36 1 10.3924 -2.8905 -1.8194 37 1 14.7269 -2.8915 -3.6423 38 1 3.9877 -1.3301 -3.2042 39 1 1.8196 -0.1273 -2.1319 40 1 1.5584 -1.6967 -1.3285 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273037559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:34 Heat of formation + Delta-G solvation = -39.364197 kcal Electronic energy + Delta-G solvation = -20194.312227 eV Core-core repulsion = 17099.057604 eV Total energy + Delta-G solvation = -3095.254622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.84629 -39.06498 -35.86247 -34.95671 -32.83834 -32.29128 -30.58511 -29.43457 -27.07592 -25.54547 -23.77109 -23.19772 -21.10473 -20.78607 -20.06492 -18.51650 -17.92536 -16.88066 -16.26355 -15.49375 -15.19033 -14.93779 -14.78559 -14.53908 -14.18350 -14.00726 -13.62994 -13.41752 -13.16559 -12.93257 -12.62970 -12.58887 -12.45570 -12.16494 -11.59815 -11.50754 -11.33258 -11.20905 -11.00774 -10.86856 -10.67990 -10.41828 -10.32013 -9.98312 -9.69383 -9.33328 -8.82232 -8.65207 -8.58899 -8.42678 -6.11510 -4.11808 0.45766 1.34771 1.79280 2.24694 3.25158 3.32824 3.34089 3.39541 3.48821 4.23918 4.37353 4.37421 4.41023 4.71324 4.75975 5.01291 5.04071 5.09859 5.20927 5.21276 5.30173 5.37233 5.43151 5.47358 5.51013 5.61119 5.71915 5.77158 5.86687 6.01487 6.07482 6.17875 6.18499 6.31122 6.53342 6.65859 7.10328 7.20963 7.64876 7.79563 8.40184 8.46468 8.92571 9.48417 11.01426 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.034590 B = 0.002926 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.291547 B = 9568.661037 C =10311.934777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.073 0.927 4 C -0.110 4.110 5 C -0.049 4.049 6 C -0.202 4.202 7 S 0.194 5.806 8 C -0.255 4.255 9 C 0.582 3.418 10 O -0.535 6.535 11 N -0.721 5.721 12 C 0.130 3.870 13 C -0.023 4.023 14 C -0.523 4.523 15 H 0.076 0.924 16 C 0.069 3.931 17 N -0.898 5.898 18 Si 0.881 3.119 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.266 1.266 22 C -0.056 4.056 23 C -0.117 4.117 24 C -0.050 4.050 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.393 0.607 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.023 0.977 36 H 0.018 0.982 37 H 0.265 0.735 38 H 0.150 0.850 39 H 0.076 0.924 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.188 6.046 13.921 30.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.092 0.908 4 C -0.149 4.149 5 C -0.088 4.088 6 C -0.321 4.321 7 S 0.464 5.536 8 C -0.375 4.375 9 C 0.367 3.633 10 O -0.414 6.414 11 N -0.370 5.370 12 C 0.009 3.991 13 C -0.061 4.061 14 C -0.561 4.561 15 H 0.095 0.905 16 C -0.133 4.133 17 N -0.536 5.536 18 Si 0.709 3.291 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.190 1.190 22 C -0.089 4.089 23 C -0.130 4.130 24 C -0.089 4.089 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.226 0.774 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.041 0.959 36 H 0.036 0.964 37 H 0.075 0.925 38 H 0.168 0.832 39 H 0.095 0.905 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.817 5.876 14.017 29.102 hybrid contribution -0.640 0.137 0.366 0.749 sum -25.457 6.014 14.383 29.851 Atomic orbital electron populations 1.21830 0.94775 1.01983 1.01862 1.21150 0.95568 0.99872 0.94563 0.90821 1.21629 0.94040 1.01236 0.97952 1.20375 0.95092 1.02057 0.91234 1.24602 0.98431 1.09136 0.99968 1.82993 1.03549 1.65310 1.01719 1.24467 0.98542 1.16896 0.97583 1.16967 0.81860 0.77511 0.86967 1.90814 1.83114 1.51024 1.16447 1.46233 1.07072 1.71141 1.12584 1.21580 0.85254 1.00774 0.91531 1.19811 0.92208 0.97082 0.96958 1.20898 0.90345 1.48862 0.95996 0.90547 1.24996 0.96193 0.94376 0.97715 1.69905 1.00490 1.48570 1.34625 0.86760 0.77776 0.78899 0.85713 1.20182 1.21226 1.19046 1.20575 0.90731 0.97211 1.00418 1.19472 0.97141 1.05154 0.91206 1.20585 0.89157 1.00937 0.98243 0.92552 0.92482 0.92534 0.91359 0.91067 0.90286 0.90050 0.77355 0.91604 0.91574 0.95925 0.96359 0.92534 0.83218 0.90498 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.17 37.16 0.34 -0.42 16 2 C -0.09 -0.60 2.68 -90.56 -0.24 -0.85 16 3 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 4 C -0.11 -0.68 5.24 -26.60 -0.14 -0.82 16 5 C -0.05 -0.35 6.22 -27.34 -0.17 -0.52 16 6 C -0.20 -2.03 6.15 -34.88 -0.21 -2.25 16 7 S 0.19 2.19 22.09 -107.50 -2.37 -0.19 16 8 C -0.25 -3.69 6.43 -36.98 -0.24 -3.92 16 9 C 0.58 10.47 7.78 -12.90 -0.10 10.37 16 10 O -0.53 -11.41 16.83 5.19 0.09 -11.32 16 11 N -0.72 -12.81 5.55 -61.65 -0.34 -13.15 16 12 C 0.13 2.73 5.61 -4.04 -0.02 2.71 16 13 C -0.02 -0.53 4.16 -27.88 -0.12 -0.65 16 14 C -0.52 -14.72 9.66 -34.44 -0.33 -15.05 16 15 H 0.08 2.33 7.99 -52.48 -0.42 1.91 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 18 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 22 C -0.06 -0.73 9.80 -40.33 -0.40 -1.13 16 23 C -0.12 -1.24 5.75 -104.87 -0.60 -1.85 16 24 C -0.05 -0.40 5.42 -27.10 -0.15 -0.54 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 29 H 0.07 0.34 8.11 -51.93 -0.42 -0.08 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.39 6.05 7.58 -40.82 -0.31 5.74 16 33 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 35 H 0.02 0.51 7.20 -51.92 -0.37 0.14 16 36 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.15 1.91 8.05 -52.49 -0.42 1.48 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.57 8.13 -51.93 -0.42 0.15 16 LS Contribution 340.47 15.07 5.13 5.13 Total: -1.00 -32.26 340.47 -10.02 -42.28 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.15 Total: 0.44 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -2.48 Total: -13.02 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.43 Total: -39.76 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.37 Total: -0.19 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.26 -10.02 -42.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273037559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.916 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds