Wall clock time and date at job start Tue Mar 31 2020 07:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.50785 * 2 1 4 4 C 1.53156 * 109.51023 * 120.09239 * 2 1 3 5 5 C 1.53089 * 108.98204 * 190.82391 * 4 2 1 6 6 C 1.51716 * 108.74616 * 309.87667 * 5 4 2 7 7 S 1.70753 * 124.55215 * 196.64312 * 6 5 4 8 8 C 1.75613 * 91.77209 * 179.97438 * 7 6 5 9 9 C 1.46582 * 125.45477 * 180.02562 * 8 7 6 10 10 O 1.21701 * 119.99931 * 179.97438 * 9 8 7 11 11 N 1.34774 * 120.00074 * 359.94597 * 9 8 7 12 12 C 1.46501 * 120.00264 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47472 * 180.02562 * 12 11 9 14 14 C 1.50703 * 109.47415 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99674 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00216 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99906 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00032 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47370 * 90.00296 * 18 16 14 20 20 H 1.48504 * 109.47247 * 210.00427 * 18 16 14 21 21 H 1.48507 * 109.47066 * 330.00116 * 18 16 14 22 22 C 1.36113 * 109.09087 * 359.97438 * 8 7 6 23 23 C 1.35231 * 124.33221 * 16.61877 * 6 5 4 24 24 C 1.52328 * 123.00124 * 359.97438 * 23 6 5 25 25 H 1.09004 * 109.47329 * 299.90277 * 1 2 3 26 26 H 1.08994 * 109.47440 * 59.90849 * 1 2 3 27 27 H 1.09003 * 109.47136 * 179.90896 * 1 2 3 28 28 H 1.08999 * 109.55194 * 70.96960 * 4 2 1 29 29 H 1.08999 * 109.54926 * 310.67453 * 4 2 1 30 30 H 1.09003 * 109.58588 * 190.10096 * 5 4 2 31 31 H 1.09000 * 109.59621 * 69.66275 * 5 4 2 32 32 H 0.96998 * 120.00144 * 0.02562 * 11 9 8 33 33 H 1.09001 * 109.47000 * 300.00348 * 12 11 9 34 34 H 1.08998 * 109.47357 * 59.99741 * 12 11 9 35 35 H 1.09009 * 109.46779 * 299.99669 * 13 12 11 36 36 H 1.08994 * 109.47561 * 59.99806 * 13 12 11 37 37 H 0.97004 * 119.99942 * 180.02562 * 17 16 14 38 38 H 1.07994 * 122.95206 * 180.26539 * 22 8 7 39 39 H 1.08999 * 109.58318 * 137.12994 * 24 23 6 40 40 H 1.08994 * 109.58673 * 257.53831 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0415 -0.7238 1.2490 5 6 3.5481 -0.4859 1.3806 6 6 4.2096 -0.8027 0.0525 7 16 5.8829 -1.0707 -0.1564 8 6 5.6807 -1.3355 -1.8807 9 6 6.7576 -1.6461 -2.8253 10 8 6.5042 -1.8115 -4.0040 11 7 8.0286 -1.7478 -2.3885 12 6 9.1051 -2.0577 -3.3327 13 6 10.4385 -2.1159 -2.5848 14 6 11.5459 -2.4340 -3.5561 15 1 11.3210 -2.5805 -4.6023 16 6 12.8459 -2.5391 -3.1092 17 7 13.8122 -2.8172 -3.9568 18 14 13.2348 -2.2864 -1.2997 19 1 13.1477 -3.5869 -0.5883 20 1 14.6074 -1.7369 -1.1603 21 1 12.2584 -1.3342 -0.7118 22 6 4.3636 -1.2072 -2.1993 23 6 3.5485 -0.9104 -1.1223 24 6 2.0419 -0.7233 -1.2468 25 1 -0.3634 0.5123 0.8909 26 1 -0.3634 0.5152 -0.8891 27 1 -0.3633 -1.0277 -0.0016 28 1 1.8477 -1.7924 1.1565 29 1 1.5323 -0.3343 2.1305 30 1 3.9544 -1.1358 2.1556 31 1 3.7322 0.5564 1.6412 32 1 8.2306 -1.6159 -1.4490 33 1 8.9100 -3.0218 -3.8024 34 1 9.1510 -1.2833 -4.0983 35 1 10.6338 -1.1519 -2.1148 36 1 10.3924 -2.8905 -1.8194 37 1 14.7269 -2.8915 -3.6423 38 1 3.9877 -1.3301 -3.2042 39 1 1.8196 -0.1273 -2.1319 40 1 1.5584 -1.6967 -1.3285 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273037559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:34 Heat of formation + Delta-G solvation = -59.062075 kcal Electronic energy + Delta-G solvation = -20195.166391 eV Core-core repulsion = 17099.057604 eV Total energy + Delta-G solvation = -3096.108786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.95882 -40.12558 -36.89556 -36.39499 -34.85691 -32.94483 -32.26788 -30.47101 -27.78546 -27.06757 -25.01335 -23.85027 -22.74851 -22.07076 -20.90224 -19.55277 -19.13250 -18.74225 -17.25891 -16.86583 -16.67018 -16.23285 -15.77784 -15.60128 -15.20494 -15.05988 -15.00214 -14.61242 -14.41937 -14.02159 -13.64585 -13.41728 -13.37730 -13.10546 -12.95305 -12.74841 -12.32816 -12.25267 -12.18267 -12.07968 -11.78362 -11.56547 -11.50097 -11.42119 -11.26643 -11.20102 -10.80499 -10.26914 -9.64525 -9.33139 -8.31451 -6.39174 -0.54227 0.41483 0.88185 1.27253 1.38171 1.40817 1.52116 2.07601 2.08941 2.35728 3.03217 3.58567 3.68401 3.88138 3.92834 4.10407 4.18576 4.27790 4.35790 4.37879 4.57158 4.59343 4.68691 4.72993 4.82234 4.86182 4.95695 5.00204 5.02006 5.06397 5.07855 5.20522 5.31111 5.34462 5.34917 5.46779 5.51433 5.56178 5.58555 6.19113 6.39807 6.67965 7.03524 7.25323 8.85160 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.034590 B = 0.002926 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.291547 B = 9568.661037 C =10311.934777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.071 0.929 4 C -0.108 4.108 5 C -0.052 4.052 6 C -0.186 4.186 7 S 0.227 5.773 8 C -0.298 4.298 9 C 0.582 3.418 10 O -0.580 6.580 11 N -0.713 5.713 12 C 0.144 3.856 13 C -0.013 4.013 14 C -0.540 4.540 15 H 0.030 0.970 16 C 0.005 3.995 17 N -0.949 5.949 18 Si 0.958 3.042 19 H -0.264 1.264 20 H -0.285 1.285 21 H -0.237 1.237 22 C -0.051 4.051 23 C -0.131 4.131 24 C -0.050 4.050 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.407 0.593 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.037 0.963 36 H 0.036 0.964 37 H 0.269 0.731 38 H 0.142 0.858 39 H 0.078 0.922 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.130 7.024 18.115 34.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.089 0.911 4 C -0.146 4.146 5 C -0.091 4.091 6 C -0.306 4.306 7 S 0.498 5.502 8 C -0.418 4.418 9 C 0.370 3.630 10 O -0.463 6.463 11 N -0.364 5.364 12 C 0.021 3.979 13 C -0.051 4.051 14 C -0.578 4.578 15 H 0.049 0.951 16 C -0.193 4.193 17 N -0.589 5.589 18 Si 0.780 3.220 19 H -0.189 1.189 20 H -0.211 1.211 21 H -0.160 1.160 22 C -0.085 4.085 23 C -0.142 4.142 24 C -0.089 4.089 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.243 0.757 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.160 0.840 39 H 0.096 0.904 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -26.784 6.862 18.239 33.123 hybrid contribution -0.124 -0.162 -0.990 1.011 sum -26.908 6.700 17.249 32.656 Atomic orbital electron populations 1.21802 0.93698 1.02297 1.02365 1.21140 0.96425 0.99446 0.93914 0.91084 1.21652 0.93285 1.01191 0.98516 1.20600 0.95615 1.03233 0.89627 1.25138 0.97880 1.06392 1.01202 1.82778 1.04379 1.64582 0.98466 1.24117 0.97798 1.20603 0.99313 1.17413 0.82309 0.76224 0.87017 1.90778 1.83806 1.53051 1.18624 1.45960 1.06435 1.71244 1.12735 1.21137 0.85665 0.99465 0.91616 1.19666 0.91181 0.98067 0.96181 1.21204 0.92443 1.49015 0.95133 0.95147 1.26074 0.95726 0.93759 1.03699 1.70073 1.01166 1.50050 1.37562 0.85557 0.78072 0.79905 0.78497 1.18873 1.21063 1.16039 1.20755 0.90693 0.96060 1.00987 1.19669 0.98448 1.05541 0.90591 1.20669 0.87296 1.01564 0.99366 0.91575 0.92525 0.92314 0.91580 0.89027 0.88821 0.88574 0.75658 0.93244 0.93245 0.94438 0.94566 0.92262 0.84023 0.90356 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.17 71.98 0.66 -0.42 16 2 C -0.09 -0.91 2.68 -10.75 -0.03 -0.94 16 3 H 0.07 0.77 8.10 -2.39 -0.02 0.75 16 4 C -0.11 -0.92 5.24 30.68 0.16 -0.76 16 5 C -0.05 -0.55 6.22 30.20 0.19 -0.36 16 6 C -0.19 -3.24 6.15 25.32 0.16 -3.08 16 7 S 0.23 4.61 22.09 -56.49 -1.25 3.36 16 8 C -0.30 -8.54 6.43 23.95 0.15 -8.38 16 9 C 0.58 21.36 7.78 86.42 0.67 22.04 16 10 O -0.58 -25.90 16.83 -4.35 -0.07 -25.97 16 11 N -0.71 -25.23 5.55 -467.18 -2.59 -27.82 16 12 C 0.14 6.20 5.61 86.38 0.48 6.69 16 13 C -0.01 -0.60 4.16 29.85 0.12 -0.48 16 14 C -0.54 -31.22 9.66 25.60 0.25 -30.97 16 15 H 0.03 1.97 7.99 -2.91 -0.02 1.94 16 16 C 0.00 0.27 5.47 84.65 0.46 0.74 16 17 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 18 Si 0.96 42.55 27.47 68.60 1.88 44.44 16 19 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H -0.24 -9.40 6.54 99.48 0.65 -8.75 16 22 C -0.05 -1.30 9.80 21.79 0.21 -1.09 16 23 C -0.13 -2.56 5.75 -20.02 -0.12 -2.67 16 24 C -0.05 -0.69 5.42 30.36 0.16 -0.53 16 25 H 0.07 0.38 8.14 -2.38 -0.02 0.37 16 26 H 0.06 0.43 8.14 -2.39 -0.02 0.42 16 27 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.07 0.63 8.10 -2.39 -0.02 0.61 16 29 H 0.09 0.47 8.11 -2.39 -0.02 0.45 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.41 11.90 7.58 -92.71 -0.70 11.20 16 33 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.04 1.62 7.20 -2.38 -0.02 1.60 16 36 H 0.04 1.54 7.57 -2.39 -0.02 1.52 16 37 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 38 H 0.14 3.74 8.05 -2.91 -0.02 3.72 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 1.06 8.13 -2.39 -0.02 1.04 16 Total: -1.00 -72.61 340.47 2.09 -70.52 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.28 Total: 14.88 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 3.54 Total: -20.24 kcal Atomic # 7 Polarization: -84.69 SS G_CDS: -2.29 Total: -86.98 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.07 Total: -25.97 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.88 Total: 44.44 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -1.25 Total: 3.36 kcal Total: -72.61 2.09 -70.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273037559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.456 kcal (2) G-P(sol) polarization free energy of solvation -72.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds