Wall clock time and date at job start Tue Mar 31 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47296 * 2 1 4 4 H 1.09004 * 109.46868 * 305.59169 * 3 2 1 5 5 S 1.81401 * 109.47236 * 65.59167 * 3 2 1 6 6 C 1.76196 * 102.99962 * 189.91127 * 5 3 2 7 7 C 1.38974 * 120.08212 * 5.92356 * 6 5 3 8 8 C 1.38086 * 119.92030 * 179.77065 * 7 6 5 9 9 C 1.38308 * 120.07729 * 0.48059 * 8 7 6 10 10 C 1.38300 * 120.15967 * 359.76881 * 9 8 7 11 11 C 1.38076 * 120.08249 * 0.02562 * 10 9 8 12 12 C 1.50693 * 109.47339 * 185.59373 * 3 2 1 13 13 O 1.21286 * 120.00263 * 264.99939 * 12 3 2 14 14 N 1.34775 * 120.00151 * 84.99690 * 12 3 2 15 15 C 1.46503 * 120.00272 * 179.97438 * 14 12 3 16 16 C 1.52992 * 109.47305 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.47416 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99509 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00235 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00094 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99969 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46925 * 59.99720 * 21 19 17 23 23 H 1.48491 * 109.47137 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46915 * 299.99883 * 21 19 17 25 25 H 1.08996 * 109.46936 * 54.64776 * 1 2 3 26 26 H 1.08998 * 109.47043 * 294.64967 * 1 2 3 27 27 H 1.09002 * 109.46889 * 174.64666 * 1 2 3 28 28 H 1.09001 * 109.47135 * 119.99799 * 2 1 3 29 29 H 1.08999 * 109.47470 * 239.99674 * 2 1 3 30 30 H 1.08002 * 120.03888 * 359.97438 * 7 6 5 31 31 H 1.07995 * 119.95978 * 180.22783 * 8 7 6 32 32 H 1.08004 * 119.91798 * 179.74721 * 9 8 7 33 33 H 1.08002 * 119.95881 * 179.97438 * 10 9 8 34 34 H 1.08008 * 120.03906 * 179.97438 * 11 10 9 35 35 H 0.96997 * 120.00279 * 0.02562 * 14 12 3 36 36 H 1.08999 * 109.47354 * 300.00329 * 15 14 12 37 37 H 1.09003 * 109.46994 * 60.00295 * 15 14 12 38 38 H 1.09006 * 109.47528 * 300.00199 * 16 15 14 39 39 H 1.09000 * 109.47317 * 60.00150 * 16 15 14 40 40 H 0.96987 * 119.99954 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5973 1.9844 -0.8357 5 16 1.5754 2.2482 1.5574 6 6 1.9713 3.9395 1.2622 7 6 2.3899 4.3471 0.0012 8 6 2.6948 5.6743 -0.2276 9 6 2.5935 6.5958 0.7988 10 6 2.1822 6.1928 2.0562 11 6 1.8716 4.8682 2.2913 12 6 3.5406 1.4448 -0.1385 13 8 4.2408 1.5032 0.8501 14 7 4.1047 1.3818 -1.3609 15 6 5.5635 1.3846 -1.4956 16 6 5.9391 1.3056 -2.9766 17 6 7.4398 1.3078 -3.1151 18 1 8.0632 1.3599 -2.2347 19 6 8.0168 1.2433 -4.3657 20 7 7.2576 1.1793 -5.4377 21 14 9.8769 1.2453 -4.5373 22 1 10.4414 0.0734 -3.8208 23 1 10.2414 1.1687 -5.9747 24 1 10.4265 2.4948 -3.9526 25 1 -0.3633 0.5946 -0.8382 26 1 -0.3633 0.4286 0.9340 27 1 -0.3633 -1.0232 -0.0959 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 2.4735 3.6273 -0.7996 31 1 3.0167 5.9924 -1.2082 32 1 2.8366 7.6325 0.6179 33 1 2.1047 6.9151 2.8555 34 1 1.5509 4.5542 3.2737 35 1 3.5448 1.3354 -2.1516 36 1 5.9663 2.3021 -1.0667 37 1 5.9786 0.5249 -0.9695 38 1 5.5364 0.3877 -3.4052 39 1 5.5240 2.1650 -3.5031 40 1 7.6635 1.1336 -6.3174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273053810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:02 Heat of formation + Delta-G solvation = -30.253262 kcal Electronic energy + Delta-G solvation = -20680.604903 eV Core-core repulsion = 17585.745360 eV Total energy + Delta-G solvation = -3094.859543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.52929 -38.87296 -35.00622 -34.80822 -32.85274 -31.22667 -30.97873 -29.90201 -27.97069 -24.67161 -23.08081 -22.72294 -21.99249 -21.05947 -20.25597 -17.81419 -17.14273 -16.76134 -16.31778 -15.70995 -15.24030 -14.89649 -14.82510 -14.53111 -14.32300 -13.71147 -13.61171 -13.27321 -13.18469 -12.96619 -12.69543 -12.33193 -12.12973 -11.76882 -11.44847 -11.28908 -11.26077 -11.04838 -10.99059 -10.69762 -10.38926 -10.26620 -9.86076 -9.78273 -9.51622 -9.25303 -9.04148 -8.61404 -8.41269 -7.36511 -6.12930 -4.16037 1.13012 1.31055 1.38329 2.21250 2.87670 3.28957 3.32842 3.35485 3.51916 3.66925 4.38301 4.53015 4.60843 4.78890 4.85932 4.88835 5.02102 5.11079 5.21451 5.24209 5.32368 5.44126 5.49414 5.67231 5.74216 5.83142 5.90977 6.04302 6.19565 6.25821 6.28284 6.31032 6.43908 6.67024 6.80705 6.83750 7.45424 7.55674 7.83949 7.87514 8.22630 8.51066 8.89457 9.49078 10.98593 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.015392 B = 0.003894 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.661602 B = 7189.209850 C = 8392.691699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.099 4.099 3 C -0.108 4.108 4 H 0.110 0.890 5 S -0.057 6.057 6 C -0.083 4.083 7 C -0.129 4.129 8 C -0.096 4.096 9 C -0.129 4.129 10 C -0.103 4.103 11 C -0.104 4.104 12 C 0.503 3.497 13 O -0.522 6.522 14 N -0.717 5.717 15 C 0.123 3.877 16 C 0.014 3.986 17 C -0.523 4.523 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.397 0.603 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.316 4.867 10.710 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.138 4.138 3 C -0.241 4.241 4 H 0.128 0.872 5 S 0.189 5.811 6 C -0.195 4.195 7 C -0.153 4.153 8 C -0.116 4.116 9 C -0.149 4.149 10 C -0.123 4.123 11 C -0.127 4.127 12 C 0.284 3.716 13 O -0.398 6.398 14 N -0.368 5.368 15 C 0.001 3.999 16 C -0.024 4.024 17 C -0.562 4.562 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.231 0.769 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.265 4.232 12.199 20.767 hybrid contribution 1.414 0.626 -1.867 2.424 sum -14.851 4.858 10.332 18.732 Atomic orbital electron populations 1.21854 0.94075 1.02280 1.02860 1.21298 0.97118 0.91149 1.04240 1.23961 0.97305 1.02237 1.00547 0.87212 1.85140 1.76840 0.97830 1.21299 1.21841 1.03400 0.97518 0.96790 1.21159 1.01531 0.97052 0.95529 1.21097 0.98257 0.92698 0.99507 1.21168 1.00806 0.99678 0.93271 1.21053 0.98796 0.95321 0.97142 1.20708 1.01630 0.92654 0.97746 1.20220 0.89213 0.77766 0.84379 1.90741 1.63100 1.48805 1.37136 1.46298 1.09870 1.73532 1.07052 1.21762 0.76110 1.00890 1.01186 1.19314 0.97236 0.97794 0.88010 1.21001 0.91094 1.51417 0.92646 0.92317 1.24982 0.98477 0.94898 0.95795 1.69937 1.35273 1.50072 0.98014 0.86574 0.85195 0.78823 0.76978 1.20077 1.21199 1.20083 0.92211 0.91577 0.91914 0.90225 0.89577 0.86292 0.85568 0.85869 0.85671 0.85660 0.76949 0.92509 0.92449 0.95924 0.95978 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.66 37.16 0.36 -0.93 16 2 C -0.10 -1.05 5.38 -26.73 -0.14 -1.19 16 3 C -0.11 -1.37 1.85 -27.89 -0.05 -1.42 16 4 H 0.11 1.19 6.85 -51.92 -0.36 0.84 16 5 S -0.06 -0.76 19.56 -107.50 -2.10 -2.86 16 6 C -0.08 -1.16 6.05 -39.04 -0.24 -1.39 16 7 C -0.13 -1.80 8.86 -39.36 -0.35 -2.15 16 8 C -0.10 -1.21 10.04 -39.61 -0.40 -1.61 16 9 C -0.13 -1.44 10.04 -39.53 -0.40 -1.84 16 10 C -0.10 -1.13 10.04 -39.62 -0.40 -1.53 16 11 C -0.10 -1.29 9.79 -39.37 -0.39 -1.67 16 12 C 0.50 8.42 5.52 -10.99 -0.06 8.36 16 13 O -0.52 -10.86 16.14 5.55 0.09 -10.78 16 14 N -0.72 -12.15 5.56 -60.30 -0.33 -12.48 16 15 C 0.12 2.58 5.61 -4.04 -0.02 2.56 16 16 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 17 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 18 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 21 Si 0.90 21.26 29.54 -169.99 -5.02 16.23 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.57 7.35 -51.93 -0.38 0.19 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.12 1.63 5.14 -52.49 -0.27 1.36 16 31 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 32 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.13 1.35 8.06 -52.48 -0.42 0.92 16 35 H 0.40 5.73 8.47 -40.82 -0.35 5.38 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 349.13 15.07 5.26 5.26 Total: -1.00 -31.95 349.13 -9.98 -41.92 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.97 Total: 3.53 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -2.64 Total: -15.74 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.40 Total: -37.58 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -2.10 Total: -2.86 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.95 -9.98 -41.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273053810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.671 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds