Wall clock time and date at job start Tue Mar 31 2020 06:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47296 * 2 1 4 4 H 1.09004 * 109.46868 * 305.59169 * 3 2 1 5 5 S 1.81401 * 109.47236 * 65.59167 * 3 2 1 6 6 C 1.76196 * 102.99962 * 189.91127 * 5 3 2 7 7 C 1.38974 * 120.08212 * 5.92356 * 6 5 3 8 8 C 1.38086 * 119.92030 * 179.77065 * 7 6 5 9 9 C 1.38308 * 120.07729 * 0.48059 * 8 7 6 10 10 C 1.38300 * 120.15967 * 359.76881 * 9 8 7 11 11 C 1.38076 * 120.08249 * 0.02562 * 10 9 8 12 12 C 1.50693 * 109.47339 * 185.59373 * 3 2 1 13 13 O 1.21286 * 120.00263 * 264.99939 * 12 3 2 14 14 N 1.34775 * 120.00151 * 84.99690 * 12 3 2 15 15 C 1.46503 * 120.00272 * 179.97438 * 14 12 3 16 16 C 1.52992 * 109.47305 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.47416 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99509 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00235 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00094 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99969 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46925 * 59.99720 * 21 19 17 23 23 H 1.48491 * 109.47137 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46915 * 299.99883 * 21 19 17 25 25 H 1.08996 * 109.46936 * 54.64776 * 1 2 3 26 26 H 1.08998 * 109.47043 * 294.64967 * 1 2 3 27 27 H 1.09002 * 109.46889 * 174.64666 * 1 2 3 28 28 H 1.09001 * 109.47135 * 119.99799 * 2 1 3 29 29 H 1.08999 * 109.47470 * 239.99674 * 2 1 3 30 30 H 1.08002 * 120.03888 * 359.97438 * 7 6 5 31 31 H 1.07995 * 119.95978 * 180.22783 * 8 7 6 32 32 H 1.08004 * 119.91798 * 179.74721 * 9 8 7 33 33 H 1.08002 * 119.95881 * 179.97438 * 10 9 8 34 34 H 1.08008 * 120.03906 * 179.97438 * 11 10 9 35 35 H 0.96997 * 120.00279 * 0.02562 * 14 12 3 36 36 H 1.08999 * 109.47354 * 300.00329 * 15 14 12 37 37 H 1.09003 * 109.46994 * 60.00295 * 15 14 12 38 38 H 1.09006 * 109.47528 * 300.00199 * 16 15 14 39 39 H 1.09000 * 109.47317 * 60.00150 * 16 15 14 40 40 H 0.96987 * 119.99954 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5973 1.9844 -0.8357 5 16 1.5754 2.2482 1.5574 6 6 1.9713 3.9395 1.2622 7 6 2.3899 4.3471 0.0012 8 6 2.6948 5.6743 -0.2276 9 6 2.5935 6.5958 0.7988 10 6 2.1822 6.1928 2.0562 11 6 1.8716 4.8682 2.2913 12 6 3.5406 1.4448 -0.1385 13 8 4.2408 1.5032 0.8501 14 7 4.1047 1.3818 -1.3609 15 6 5.5635 1.3846 -1.4956 16 6 5.9391 1.3056 -2.9766 17 6 7.4398 1.3078 -3.1151 18 1 8.0632 1.3599 -2.2347 19 6 8.0168 1.2433 -4.3657 20 7 7.2576 1.1793 -5.4377 21 14 9.8769 1.2453 -4.5373 22 1 10.4414 0.0734 -3.8208 23 1 10.2414 1.1687 -5.9747 24 1 10.4265 2.4948 -3.9526 25 1 -0.3633 0.5946 -0.8382 26 1 -0.3633 0.4286 0.9340 27 1 -0.3633 -1.0232 -0.0959 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 2.4735 3.6273 -0.7996 31 1 3.0167 5.9924 -1.2082 32 1 2.8366 7.6325 0.6179 33 1 2.1047 6.9151 2.8555 34 1 1.5509 4.5542 3.2737 35 1 3.5448 1.3354 -2.1516 36 1 5.9663 2.3021 -1.0667 37 1 5.9786 0.5249 -0.9695 38 1 5.5364 0.3877 -3.4052 39 1 5.5240 2.1650 -3.5031 40 1 7.6635 1.1336 -6.3174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273053810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:01 Heat of formation + Delta-G solvation = -48.455691 kcal Electronic energy + Delta-G solvation = -20681.394219 eV Core-core repulsion = 17585.745360 eV Total energy + Delta-G solvation = -3095.648859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.92679 -39.81424 -36.68302 -35.85075 -34.80073 -32.18450 -31.89981 -31.62929 -29.12965 -26.56148 -23.97118 -23.64661 -23.24481 -22.66442 -21.61946 -18.82269 -18.66225 -18.18618 -17.82167 -16.78116 -16.55166 -16.48442 -16.10235 -15.93181 -15.37678 -15.07042 -14.90537 -14.42361 -14.33432 -14.10618 -13.83167 -13.78462 -13.26618 -13.09275 -12.93155 -12.65432 -12.54620 -12.31366 -12.21860 -12.16125 -11.86919 -11.70417 -11.50304 -11.27531 -10.90073 -10.71395 -10.61834 -10.11127 -9.98189 -8.38072 -8.25681 -6.36323 0.16439 0.36703 0.38520 1.15910 1.40785 1.42522 1.50561 1.55580 2.14332 2.41714 2.73443 3.09103 3.50646 3.58040 3.76455 3.89198 3.97489 4.19806 4.28945 4.36506 4.43802 4.46072 4.46928 4.52875 4.73500 4.76029 4.80430 5.00969 5.03977 5.08837 5.20574 5.25749 5.37094 5.41328 5.43950 5.52347 5.54773 5.75518 5.95233 6.13531 6.47158 6.76033 7.12975 7.33086 8.85677 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.015392 B = 0.003894 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.661602 B = 7189.209850 C = 8392.691699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.098 4.098 4 H 0.130 0.870 5 S -0.063 6.063 6 C -0.106 4.106 7 C -0.151 4.151 8 C -0.111 4.111 9 C -0.129 4.129 10 C -0.101 4.101 11 C -0.116 4.116 12 C 0.506 3.494 13 O -0.564 6.564 14 N -0.710 5.710 15 C 0.144 3.856 16 C 0.025 3.975 17 C -0.549 4.549 18 H 0.056 0.944 19 C 0.011 3.989 20 N -0.925 5.925 21 Si 0.962 3.038 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.269 1.269 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.136 0.864 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.138 0.862 35 H 0.411 0.589 36 H 0.043 0.957 37 H 0.046 0.954 38 H 0.011 0.989 39 H 0.009 0.991 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.776 5.580 11.019 20.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.137 4.137 3 C -0.230 4.230 4 H 0.148 0.852 5 S 0.183 5.817 6 C -0.219 4.219 7 C -0.175 4.175 8 C -0.131 4.131 9 C -0.149 4.149 10 C -0.121 4.121 11 C -0.139 4.139 12 C 0.290 3.710 13 O -0.443 6.443 14 N -0.361 5.361 15 C 0.020 3.980 16 C -0.012 4.012 17 C -0.587 4.587 18 H 0.075 0.925 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.786 3.214 22 H -0.194 1.194 23 H -0.205 1.205 24 H -0.194 1.194 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.112 0.888 30 H 0.132 0.868 31 H 0.154 0.846 32 H 0.169 0.831 33 H 0.175 0.825 34 H 0.156 0.844 35 H 0.247 0.753 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.029 0.971 39 H 0.028 0.972 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.760 4.948 12.500 21.485 hybrid contribution 1.536 0.459 -1.934 2.512 sum -15.223 5.408 10.566 19.304 Atomic orbital electron populations 1.21824 0.92026 1.03473 1.03151 1.21370 0.98815 0.89391 1.04111 1.23955 0.93831 1.04002 1.01249 0.85168 1.85087 1.76658 0.98055 1.21926 1.22054 1.04510 0.97933 0.97382 1.21264 1.02781 0.97775 0.95650 1.21364 0.98479 0.92616 1.00636 1.21551 0.99680 1.00778 0.92925 1.21465 0.97337 0.95306 0.97974 1.21031 1.01638 0.93258 0.98003 1.20860 0.90894 0.76040 0.83244 1.90719 1.64613 1.50571 1.38394 1.46079 1.08338 1.73562 1.08164 1.21228 0.78564 0.99662 0.98575 1.19112 0.95903 0.96448 0.89769 1.21416 0.92748 1.51660 0.92904 0.92528 1.25818 1.03256 0.94325 0.95423 1.70036 1.37223 1.50653 0.98491 0.85545 0.79471 0.79095 0.77243 1.19397 1.20459 1.19432 0.91203 0.91874 0.90404 0.91303 0.88777 0.86827 0.84640 0.83132 0.82502 0.84440 0.75315 0.93901 0.93511 0.97089 0.97246 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.66 71.98 0.70 -1.50 16 2 C -0.10 -1.96 5.38 30.60 0.16 -1.80 16 3 C -0.10 -2.43 1.85 29.85 0.06 -2.38 16 4 H 0.13 2.69 6.85 -2.39 -0.02 2.68 16 5 S -0.06 -1.66 19.56 -56.49 -1.11 -2.76 16 6 C -0.11 -2.93 6.05 22.62 0.14 -2.80 16 7 C -0.15 -4.20 8.86 22.41 0.20 -4.00 16 8 C -0.11 -2.73 10.04 22.25 0.22 -2.50 16 9 C -0.13 -2.64 10.04 22.30 0.22 -2.42 16 10 C -0.10 -2.01 10.04 22.25 0.22 -1.78 16 11 C -0.12 -2.75 9.79 22.41 0.22 -2.53 16 12 C 0.51 17.02 5.52 87.66 0.48 17.51 16 13 O -0.56 -23.90 16.14 -3.05 -0.05 -23.95 16 14 N -0.71 -24.21 5.56 -463.07 -2.57 -26.78 16 15 C 0.14 6.16 5.61 86.38 0.48 6.64 16 16 C 0.03 1.25 5.09 29.85 0.15 1.40 16 17 C -0.55 -30.50 9.11 25.60 0.23 -30.27 16 18 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 19 C 0.01 0.61 5.46 84.65 0.46 1.07 16 20 N -0.92 -53.58 13.29 21.45 0.28 -53.29 16 21 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 23 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 26 H 0.06 0.99 7.35 -2.39 -0.02 0.98 16 27 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.11 3.13 5.14 -2.91 -0.01 3.11 16 31 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 32 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 34 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 35 H 0.41 11.75 8.47 -92.71 -0.79 10.96 16 36 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.27 14.54 8.31 -92.72 -0.77 13.77 16 Total: -1.00 -68.73 349.13 2.78 -65.95 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.24 Total: 20.83 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: 3.96 Total: -25.35 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -2.29 Total: -80.07 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.05 Total: -23.95 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -1.11 Total: -2.76 kcal Total: -68.73 2.78 -65.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273053810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.494 kcal (2) G-P(sol) polarization free energy of solvation -68.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds