Wall clock time and date at job start Tue Mar 31 2020 07:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47640 * 2 1 4 4 S 1.81407 * 109.47031 * 120.00005 * 2 1 3 5 5 C 1.76199 * 103.00011 * 169.22360 * 4 2 1 6 6 C 1.39046 * 120.18561 * 354.25962 * 5 4 2 7 7 C 1.37901 * 120.05842 * 180.02562 * 6 5 4 8 8 C 1.38646 * 120.43653 * 359.97438 * 7 6 5 9 9 C 1.37734 * 120.37000 * 359.97362 * 8 7 6 10 10 C 1.39745 * 119.93226 * 0.02562 * 9 8 7 11 11 C 1.47384 * 120.21334 * 179.97438 * 10 9 8 12 12 O 1.21612 * 119.99808 * 179.97438 * 11 10 9 13 13 N 1.34779 * 120.00169 * 0.02562 * 11 10 9 14 14 C 1.46491 * 120.00051 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47255 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47368 * 179.97438 * 15 14 13 17 17 H 1.08007 * 120.00000 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00359 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00192 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99695 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47080 * 89.99656 * 20 18 16 22 22 H 1.48495 * 109.47020 * 209.99763 * 20 18 16 23 23 H 1.48504 * 109.47409 * 330.00157 * 20 18 16 24 24 H 1.09002 * 109.47160 * 300.00149 * 1 2 3 25 25 H 1.08996 * 109.47061 * 60.00018 * 1 2 3 26 26 H 1.09002 * 109.47406 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46978 * 239.99470 * 2 1 3 28 28 H 1.08999 * 109.47527 * 174.45958 * 3 2 1 29 29 H 1.09006 * 109.47040 * 294.46041 * 3 2 1 30 30 H 1.09000 * 109.47514 * 54.45495 * 3 2 1 31 31 H 1.08002 * 119.96594 * 0.02562 * 6 5 4 32 32 H 1.08005 * 119.77890 * 180.02562 * 7 6 5 33 33 H 1.08009 * 119.81332 * 179.97438 * 8 7 6 34 34 H 1.08003 * 120.03225 * 179.74909 * 9 8 7 35 35 H 0.96995 * 119.99680 * 0.02562 * 13 11 10 36 36 H 1.09009 * 109.47074 * 299.99811 * 14 13 11 37 37 H 1.09003 * 109.47148 * 59.99779 * 14 13 11 38 38 H 1.09009 * 109.46685 * 299.99754 * 15 14 13 39 39 H 1.09003 * 109.47464 * 59.99678 * 15 14 13 40 40 H 0.97004 * 119.99608 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 16 2.1346 -0.8552 1.4812 5 6 3.8569 -1.0389 1.1575 6 6 4.3798 -0.6681 -0.0764 7 6 5.7280 -0.8135 -0.3271 8 6 6.5717 -1.3285 0.6452 9 6 6.0729 -1.7005 1.8739 10 6 4.7091 -1.5597 2.1446 11 6 4.1687 -1.9564 3.4571 12 8 2.9813 -1.8318 3.6886 13 7 4.9905 -2.4563 4.4012 14 6 4.4534 -2.8500 5.7060 15 6 5.5874 -3.3804 6.5854 16 6 5.0350 -3.7849 7.9279 17 1 3.9805 -3.6743 8.1335 18 6 5.8757 -4.2962 8.8938 19 7 5.3937 -4.6486 10.0654 20 14 7.6997 -4.4868 8.5384 21 1 8.4126 -3.2440 8.9289 22 1 8.2384 -5.6316 9.3158 23 1 7.8981 -4.7362 7.0880 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 3.1255 1.4440 0.0992 29 1 1.7600 1.9268 -0.9355 30 1 1.5980 1.9842 0.8361 31 1 3.7294 -0.2658 -0.8390 32 1 6.1294 -0.5236 -1.2870 33 1 7.6259 -1.4384 0.4379 34 1 6.7343 -2.1048 2.6259 35 1 5.9377 -2.5546 4.2169 36 1 3.9956 -1.9852 6.1864 37 1 3.7035 -3.6294 5.5701 38 1 6.0456 -4.2451 6.1051 39 1 6.3370 -2.6008 6.7213 40 1 5.9853 -5.0080 10.7450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273089810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:29 Heat of formation + Delta-G solvation = -22.296427 kcal Electronic energy + Delta-G solvation = -20451.517297 eV Core-core repulsion = 17357.002789 eV Total energy + Delta-G solvation = -3094.514508 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.02409 -38.22593 -35.15585 -34.97968 -32.90386 -31.58632 -31.24288 -29.81939 -27.48145 -25.38426 -23.68090 -22.85284 -22.00961 -20.82998 -20.19039 -18.21248 -17.06965 -16.83069 -16.01175 -15.75413 -15.08533 -15.00255 -14.86297 -14.65024 -14.16883 -14.06730 -13.73109 -13.45183 -13.11883 -12.67767 -12.60433 -12.55427 -12.47790 -11.84973 -11.59877 -11.57247 -11.48534 -11.21464 -11.05929 -10.60219 -10.40531 -10.07778 -9.94885 -9.89554 -9.35876 -9.22065 -9.00276 -8.64890 -8.54722 -7.37754 -6.10842 -4.10942 0.69633 1.03000 1.49341 2.45118 2.94382 3.25218 3.32750 3.33933 3.54505 3.75365 4.37751 4.48208 4.57233 4.61475 4.65774 4.81730 4.95391 5.13605 5.18117 5.22038 5.30060 5.39808 5.44007 5.48168 5.55184 5.62169 5.86983 5.88989 5.91069 6.02402 6.13992 6.19901 6.21000 6.55644 6.57825 6.72454 7.12893 7.22812 7.66366 7.85984 8.42903 8.51321 8.93709 9.49197 11.02233 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.023267 B = 0.003410 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.110218 B = 8208.931610 C = 9264.973507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.142 4.142 3 C -0.147 4.147 4 S 0.010 5.990 5 C -0.045 4.045 6 C -0.148 4.148 7 C -0.079 4.079 8 C -0.139 4.139 9 C -0.066 4.066 10 C -0.123 4.123 11 C 0.543 3.457 12 O -0.516 6.516 13 N -0.719 5.719 14 C 0.131 3.869 15 C -0.022 4.022 16 C -0.523 4.523 17 H 0.076 0.924 18 C 0.069 3.931 19 N -0.898 5.898 20 Si 0.882 3.118 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.395 0.605 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.022 0.978 39 H 0.017 0.983 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.666 10.208 -25.266 27.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.270 4.270 3 C -0.205 4.205 4 S 0.258 5.742 5 C -0.160 4.160 6 C -0.172 4.172 7 C -0.099 4.099 8 C -0.160 4.160 9 C -0.087 4.087 10 C -0.133 4.133 11 C 0.330 3.670 12 O -0.395 6.395 13 N -0.369 5.369 14 C 0.009 3.991 15 C -0.060 4.060 16 C -0.561 4.561 17 H 0.094 0.906 18 C -0.133 4.133 19 N -0.537 5.537 20 Si 0.709 3.291 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.229 0.771 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.040 0.960 39 H 0.036 0.964 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.324 9.896 -23.927 25.997 hybrid contribution 2.424 0.143 -1.258 2.735 sum 0.100 10.040 -25.185 27.112 Atomic orbital electron populations 1.21513 0.91612 1.02941 1.02631 1.23853 1.00606 1.00093 1.02440 1.22090 1.01532 0.94403 1.02519 1.87261 0.97315 1.69102 1.20559 1.22187 0.98890 0.99292 0.95647 1.21167 0.96402 1.03962 0.95697 1.21185 0.93013 0.96620 0.99061 1.21067 1.00189 1.01171 0.93561 1.21321 0.93524 0.96558 0.97254 1.19730 0.93685 1.05526 0.94389 1.18123 0.86523 0.78502 0.83902 1.90695 1.15113 1.54269 1.79428 1.46203 1.11377 1.63868 1.15453 1.21549 0.98054 0.99580 0.79957 1.19802 0.94208 0.96099 0.95892 1.20915 0.97129 1.42546 0.95500 0.90566 1.24999 0.98763 0.94688 0.94822 1.69903 1.35749 1.43164 1.04840 0.86756 0.85628 0.77974 0.78752 1.20212 1.21264 1.19075 0.91633 0.91431 0.91654 0.89559 0.92153 0.92234 0.91380 0.85203 0.85535 0.85291 0.85045 0.77090 0.91722 0.91701 0.95990 0.96428 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 9.20 37.16 0.34 -0.72 16 2 C -0.14 -1.34 2.59 -26.74 -0.07 -1.41 16 3 C -0.15 -1.24 8.72 37.15 0.32 -0.92 16 4 S 0.01 0.13 18.20 -107.50 -1.96 -1.82 16 5 C -0.04 -0.60 6.03 -38.46 -0.23 -0.84 16 6 C -0.15 -1.54 8.07 -39.41 -0.32 -1.86 16 7 C -0.08 -0.70 10.02 -39.55 -0.40 -1.09 16 8 C -0.14 -1.28 10.02 -39.61 -0.40 -1.68 16 9 C -0.07 -0.75 9.53 -39.20 -0.37 -1.12 16 10 C -0.12 -1.77 5.89 -104.79 -0.62 -2.39 16 11 C 0.54 9.53 7.75 -12.54 -0.10 9.43 16 12 O -0.52 -10.57 13.77 5.27 0.07 -10.50 16 13 N -0.72 -12.30 5.51 -61.40 -0.34 -12.64 16 14 C 0.13 2.70 5.61 -4.05 -0.02 2.68 16 15 C -0.02 -0.51 4.16 -27.88 -0.12 -0.63 16 16 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 16 17 H 0.08 2.32 7.99 -52.48 -0.42 1.90 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 19 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 20 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.74 6.81 -51.93 -0.35 0.38 16 28 H 0.06 0.54 6.20 -51.93 -0.32 0.22 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.13 1.11 5.01 -52.49 -0.26 0.84 16 32 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 33 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 34 H 0.13 1.25 6.40 -52.48 -0.34 0.92 16 35 H 0.39 5.62 6.50 -40.82 -0.27 5.36 16 36 H 0.06 1.41 8.14 -51.92 -0.42 0.98 16 37 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.02 0.49 7.20 -51.92 -0.37 0.12 16 39 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 337.49 15.07 5.09 5.09 Total: -1.00 -32.68 337.49 -9.13 -41.81 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -5.70 Total: 2.01 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -2.40 Total: -13.67 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.44 Total: -39.27 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -1.96 Total: -1.82 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.68 -9.13 -41.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273089810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.517 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds