Wall clock time and date at job start Tue Mar 31 2020 07:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47640 * 2 1 4 4 S 1.81407 * 109.47031 * 120.00005 * 2 1 3 5 5 C 1.76199 * 103.00011 * 169.22360 * 4 2 1 6 6 C 1.39046 * 120.18561 * 354.25962 * 5 4 2 7 7 C 1.37901 * 120.05842 * 180.02562 * 6 5 4 8 8 C 1.38646 * 120.43653 * 359.97438 * 7 6 5 9 9 C 1.37734 * 120.37000 * 359.97362 * 8 7 6 10 10 C 1.39745 * 119.93226 * 0.02562 * 9 8 7 11 11 C 1.47384 * 120.21334 * 179.97438 * 10 9 8 12 12 O 1.21612 * 119.99808 * 179.97438 * 11 10 9 13 13 N 1.34779 * 120.00169 * 0.02562 * 11 10 9 14 14 C 1.46491 * 120.00051 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47255 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47368 * 179.97438 * 15 14 13 17 17 H 1.08007 * 120.00000 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00359 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00192 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99695 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47080 * 89.99656 * 20 18 16 22 22 H 1.48495 * 109.47020 * 209.99763 * 20 18 16 23 23 H 1.48504 * 109.47409 * 330.00157 * 20 18 16 24 24 H 1.09002 * 109.47160 * 300.00149 * 1 2 3 25 25 H 1.08996 * 109.47061 * 60.00018 * 1 2 3 26 26 H 1.09002 * 109.47406 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46978 * 239.99470 * 2 1 3 28 28 H 1.08999 * 109.47527 * 174.45958 * 3 2 1 29 29 H 1.09006 * 109.47040 * 294.46041 * 3 2 1 30 30 H 1.09000 * 109.47514 * 54.45495 * 3 2 1 31 31 H 1.08002 * 119.96594 * 0.02562 * 6 5 4 32 32 H 1.08005 * 119.77890 * 180.02562 * 7 6 5 33 33 H 1.08009 * 119.81332 * 179.97438 * 8 7 6 34 34 H 1.08003 * 120.03225 * 179.74909 * 9 8 7 35 35 H 0.96995 * 119.99680 * 0.02562 * 13 11 10 36 36 H 1.09009 * 109.47074 * 299.99811 * 14 13 11 37 37 H 1.09003 * 109.47148 * 59.99779 * 14 13 11 38 38 H 1.09009 * 109.46685 * 299.99754 * 15 14 13 39 39 H 1.09003 * 109.47464 * 59.99678 * 15 14 13 40 40 H 0.97004 * 119.99608 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 16 2.1346 -0.8552 1.4812 5 6 3.8569 -1.0389 1.1575 6 6 4.3798 -0.6681 -0.0764 7 6 5.7280 -0.8135 -0.3271 8 6 6.5717 -1.3285 0.6452 9 6 6.0729 -1.7005 1.8739 10 6 4.7091 -1.5597 2.1446 11 6 4.1687 -1.9564 3.4571 12 8 2.9813 -1.8318 3.6886 13 7 4.9905 -2.4563 4.4012 14 6 4.4534 -2.8500 5.7060 15 6 5.5874 -3.3804 6.5854 16 6 5.0350 -3.7849 7.9279 17 1 3.9805 -3.6743 8.1335 18 6 5.8757 -4.2962 8.8938 19 7 5.3937 -4.6486 10.0654 20 14 7.6997 -4.4868 8.5384 21 1 8.4126 -3.2440 8.9289 22 1 8.2384 -5.6316 9.3158 23 1 7.8981 -4.7362 7.0880 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 3.1255 1.4440 0.0992 29 1 1.7600 1.9268 -0.9355 30 1 1.5980 1.9842 0.8361 31 1 3.7294 -0.2658 -0.8390 32 1 6.1294 -0.5236 -1.2870 33 1 7.6259 -1.4384 0.4379 34 1 6.7343 -2.1048 2.6259 35 1 5.9377 -2.5546 4.2169 36 1 3.9956 -1.9852 6.1864 37 1 3.7035 -3.6294 5.5701 38 1 6.0456 -4.2451 6.1051 39 1 6.3370 -2.6008 6.7213 40 1 5.9853 -5.0080 10.7450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273089810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:28 Heat of formation + Delta-G solvation = -42.881088 kcal Electronic energy + Delta-G solvation = -20452.409915 eV Core-core repulsion = 17357.002789 eV Total energy + Delta-G solvation = -3095.407126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.18340 -39.27438 -36.71898 -35.78386 -34.86215 -32.85877 -32.06390 -31.39128 -28.14910 -27.10702 -24.83043 -23.70880 -22.95615 -22.56284 -21.37888 -19.28543 -19.00668 -17.93349 -17.01949 -16.84539 -16.55765 -16.25707 -15.95033 -15.69030 -15.56721 -15.12353 -15.01443 -14.69734 -14.47714 -14.06046 -13.65611 -13.35347 -13.30622 -13.14583 -13.03758 -12.59864 -12.36157 -12.28512 -12.21033 -12.17909 -11.83961 -11.76498 -11.57526 -11.44224 -10.79721 -10.74246 -10.22618 -10.11058 -9.94068 -8.39648 -8.30744 -6.38429 -0.22547 0.24043 0.59847 1.38614 1.41707 1.52972 1.58961 1.85056 2.21798 2.36605 2.78071 3.04176 3.68987 3.73564 3.84004 3.91250 4.08462 4.22423 4.31935 4.39399 4.39795 4.43407 4.57843 4.68823 4.71964 4.75594 4.81980 4.85283 4.92497 5.08112 5.14070 5.20615 5.22956 5.29442 5.37651 5.39245 5.43664 5.62157 5.85033 6.21002 6.54346 6.69565 7.19481 7.26192 8.86213 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.023267 B = 0.003410 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.110218 B = 8208.931610 C = 9264.973507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.118 4.118 3 C -0.144 4.144 4 S -0.084 6.084 5 C -0.053 4.053 6 C -0.149 4.149 7 C -0.065 4.065 8 C -0.131 4.131 9 C -0.069 4.069 10 C -0.154 4.154 11 C 0.538 3.462 12 O -0.557 6.557 13 N -0.711 5.711 14 C 0.147 3.853 15 C -0.011 4.011 16 C -0.541 4.541 17 H 0.027 0.973 18 C 0.004 3.996 19 N -0.951 5.951 20 Si 0.960 3.040 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.235 1.235 24 H 0.054 0.946 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.149 0.851 32 H 0.167 0.833 33 H 0.165 0.835 34 H 0.147 0.853 35 H 0.411 0.589 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.038 0.962 39 H 0.036 0.964 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.762 11.190 -29.327 31.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.246 4.246 3 C -0.202 4.202 4 S 0.164 5.836 5 C -0.168 4.168 6 C -0.173 4.173 7 C -0.085 4.085 8 C -0.152 4.152 9 C -0.089 4.089 10 C -0.164 4.164 11 C 0.326 3.674 12 O -0.438 6.438 13 N -0.363 5.363 14 C 0.023 3.977 15 C -0.049 4.049 16 C -0.579 4.579 17 H 0.046 0.954 18 C -0.193 4.193 19 N -0.591 5.591 20 Si 0.782 3.218 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.158 1.158 24 H 0.073 0.927 25 H 0.114 0.886 26 H 0.077 0.923 27 H 0.120 0.880 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.166 0.834 32 H 0.184 0.816 33 H 0.183 0.817 34 H 0.165 0.835 35 H 0.248 0.752 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.124 10.889 -28.024 30.086 hybrid contribution 1.253 -0.106 -0.082 1.260 sum 2.377 10.783 -28.106 30.197 Atomic orbital electron populations 1.21559 0.90903 1.02847 1.03413 1.23830 1.00905 1.00074 0.99798 1.22066 1.01156 0.93547 1.03440 1.87467 1.00106 1.70820 1.25247 1.22226 0.97496 1.00269 0.96822 1.21461 0.97683 1.03420 0.94717 1.21703 0.92014 0.94335 1.00461 1.21518 1.02011 0.99352 0.92303 1.21571 0.92132 0.96376 0.98838 1.19567 0.95398 1.08433 0.92993 1.18744 0.86032 0.77531 0.85047 1.90696 1.16903 1.55643 1.80536 1.45919 1.12266 1.64099 1.14006 1.21040 0.97025 0.98027 0.81566 1.19646 0.94805 0.97063 0.93391 1.21244 0.95346 1.42908 0.98404 0.95424 1.26102 1.05059 0.93960 0.94212 1.70079 1.38158 1.44519 1.06334 0.85525 0.77721 0.78283 0.80280 1.18882 1.21180 1.15837 0.92680 0.88612 0.92277 0.88044 0.92525 0.89491 0.92521 0.83369 0.81563 0.81719 0.83518 0.75154 0.93800 0.93807 0.94388 0.94528 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.20 71.98 0.66 -1.37 16 2 C -0.12 -2.11 2.59 30.59 0.08 -2.03 16 3 C -0.14 -2.17 8.72 71.98 0.63 -1.54 16 4 S -0.08 -2.45 18.20 -56.49 -1.03 -3.48 16 5 C -0.05 -1.40 6.03 23.00 0.14 -1.26 16 6 C -0.15 -2.66 8.07 22.38 0.18 -2.48 16 7 C -0.07 -0.84 10.02 22.29 0.22 -0.61 16 8 C -0.13 -1.80 10.02 22.25 0.22 -1.58 16 9 C -0.07 -1.38 9.53 22.51 0.21 -1.16 16 10 C -0.15 -4.36 5.89 -19.97 -0.12 -4.47 16 11 C 0.54 19.52 7.75 86.65 0.67 20.19 16 12 O -0.56 -24.43 13.77 -4.07 -0.06 -24.49 16 13 N -0.71 -24.46 5.51 -466.41 -2.57 -27.03 16 14 C 0.15 6.32 5.61 86.38 0.48 6.81 16 15 C -0.01 -0.52 4.16 29.85 0.12 -0.39 16 16 C -0.54 -31.47 9.66 25.60 0.25 -31.22 16 17 H 0.03 1.81 7.99 -2.91 -0.02 1.78 16 18 C 0.00 0.22 5.47 84.66 0.46 0.68 16 19 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 20 Si 0.96 42.52 27.47 68.60 1.88 44.41 16 21 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.24 -9.21 6.54 99.48 0.65 -8.56 16 24 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.10 1.49 6.81 -2.39 -0.02 1.48 16 28 H 0.06 0.90 6.20 -2.39 -0.01 0.89 16 29 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.15 2.01 5.01 -2.91 -0.01 2.00 16 32 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 33 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.15 2.32 6.40 -2.91 -0.02 2.31 16 35 H 0.41 11.07 6.50 -92.71 -0.60 10.47 16 36 H 0.04 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.04 1.62 7.20 -2.38 -0.02 1.60 16 39 H 0.04 1.54 7.57 -2.39 -0.02 1.52 16 40 H 0.27 15.67 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -77.08 337.49 3.14 -73.94 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.39 Total: 16.77 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: 4.22 Total: -20.44 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -2.27 Total: -86.71 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.06 Total: -24.49 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.88 Total: 44.41 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -1.03 Total: -3.48 kcal Total: -77.08 3.14 -73.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273089810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.057 kcal (2) G-P(sol) polarization free energy of solvation -77.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds