Wall clock time and date at job start Tue Mar 31 2020 07:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 108.83044 * 2 1 4 4 C 1.54266 * 108.75038 * 241.54240 * 2 1 3 5 5 S 1.83954 * 102.58026 * 214.72758 * 4 2 1 6 6 C 1.83966 * 94.80662 * 34.49375 * 5 4 2 7 7 C 1.52327 * 108.87028 * 118.53880 * 2 1 3 8 8 H 1.09005 * 108.86506 * 241.34741 * 7 2 1 9 9 N 1.46899 * 108.86997 * 359.84970 * 7 2 1 10 10 C 1.46907 * 110.99867 * 189.81641 * 9 7 2 11 11 C 1.50702 * 109.46683 * 180.02562 * 10 9 7 12 12 C 1.38299 * 119.92884 * 269.72639 * 11 10 9 13 13 C 1.38098 * 120.06621 * 179.72729 * 12 11 10 14 14 C 1.38883 * 119.93157 * 0.57236 * 13 12 11 15 15 O 1.35753 * 120.07080 * 179.67986 * 14 13 12 16 16 C 1.34829 * 117.00005 * 183.00897 * 15 14 13 17 17 H 1.07997 * 119.99803 * 5.52535 * 16 15 14 18 18 C 1.38650 * 119.99966 * 185.52677 * 16 15 14 19 19 N 1.31552 * 119.99765 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99953 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46802 * 89.99916 * 20 18 16 22 22 H 1.48500 * 109.47077 * 209.99955 * 20 18 16 23 23 H 1.48498 * 109.47151 * 330.00125 * 20 18 16 24 24 C 1.38879 * 119.85880 * 359.70025 * 14 13 12 25 25 C 1.38100 * 119.93302 * 0.02562 * 24 14 13 26 26 H 1.08997 * 109.46809 * 310.27514 * 1 2 3 27 27 H 1.09001 * 109.47520 * 70.27937 * 1 2 3 28 28 H 1.09006 * 109.47094 * 190.28457 * 1 2 3 29 29 H 1.09003 * 110.78758 * 332.99965 * 4 2 1 30 30 H 1.08996 * 110.78863 * 96.45152 * 4 2 1 31 31 H 1.08994 * 110.78579 * 207.23154 * 6 5 4 32 32 H 1.08999 * 110.78539 * 83.77734 * 6 5 4 33 33 H 1.00889 * 110.99945 * 313.77214 * 9 7 2 34 34 H 1.08994 * 109.46959 * 60.00626 * 10 9 7 35 35 H 1.08999 * 109.47233 * 300.00401 * 10 9 7 36 36 H 1.08001 * 119.97002 * 359.97438 * 12 11 10 37 37 H 1.08006 * 120.03473 * 180.26823 * 13 12 11 38 38 H 0.97004 * 119.99846 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.03285 * 180.02562 * 24 14 13 40 40 H 1.07999 * 119.96458 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8818 1.0317 0.0000 4 6 2.0259 -0.6961 -1.2843 5 16 3.5519 -1.5500 -0.7135 6 6 2.9019 -1.9204 0.9672 7 6 2.0227 -0.6886 1.2663 8 1 2.6047 0.0237 1.8512 9 7 0.8610 -1.1150 2.0579 10 6 1.2725 -1.5739 3.3914 11 6 0.0569 -2.0027 4.1722 12 6 -0.6190 -1.0852 4.9557 13 6 -1.7365 -1.4737 5.6680 14 6 -2.1745 -2.7902 5.6062 15 8 -3.2689 -3.1768 6.3103 16 6 -3.6028 -4.4819 6.2549 17 1 -2.9598 -5.1825 5.7431 18 6 -4.7717 -4.9244 6.8551 19 7 -5.5547 -4.0710 7.4789 20 14 -5.2340 -6.7327 6.7790 21 1 -4.6580 -7.4405 7.9506 22 1 -6.7128 -6.8668 6.7975 23 1 -4.6985 -7.3284 5.5286 24 6 -1.4902 -3.7105 4.8229 25 6 -0.3767 -3.3144 4.1085 26 1 -0.3633 0.6643 0.7840 27 1 -0.3634 0.3468 -0.9674 28 1 -0.3633 -1.0112 0.1835 29 1 1.2904 -1.4165 -1.6425 30 1 2.2587 0.0371 -2.0565 31 1 3.7157 -1.9990 1.6880 32 1 2.3023 -2.8306 0.9581 33 1 0.1780 -0.3755 2.1248 34 1 1.7739 -0.7610 3.9166 35 1 1.9555 -2.4173 3.2907 36 1 -0.2748 -0.0628 5.0076 37 1 -2.2665 -0.7557 6.2763 38 1 -6.3723 -4.3806 7.8991 39 1 -1.8286 -4.7349 4.7724 40 1 0.1556 -4.0296 3.4989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286024127.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:53 Heat of formation + Delta-G solvation = 2.217749 kcal Electronic energy + Delta-G solvation = -20610.826962 eV Core-core repulsion = 17517.375468 eV Total energy + Delta-G solvation = -3093.451494 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.26310 -38.54468 -36.64218 -33.78722 -32.28201 -30.45814 -30.19735 -29.13423 -27.06983 -25.61502 -24.55248 -23.16021 -21.98527 -20.45463 -19.37904 -18.00851 -17.21072 -16.90250 -16.50810 -15.48465 -14.99681 -14.71569 -14.50247 -14.34785 -13.92448 -13.65278 -13.47391 -13.39208 -13.08713 -12.71965 -12.48130 -12.37553 -12.15823 -11.94725 -11.65035 -11.52526 -11.29165 -11.18626 -11.07529 -10.80168 -10.68349 -10.52823 -10.44669 -10.14631 -9.36795 -8.85849 -8.47724 -8.19624 -7.95184 -7.21057 -6.47631 -4.06360 1.66203 2.06137 2.19528 2.26842 3.11450 3.12512 3.17318 3.94950 4.06974 4.16754 4.48095 4.59844 4.64067 4.92045 4.96047 5.08722 5.18377 5.21601 5.28221 5.31125 5.35778 5.41009 5.47893 5.54026 5.71419 5.75993 5.78033 5.83605 5.86169 6.18735 6.19287 6.40529 6.67125 6.87436 6.93226 7.06565 7.16948 7.32935 7.39549 7.43106 7.80495 7.97642 8.98241 9.68052 10.70388 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.027988 B = 0.002841 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.204819 B = 9852.015476 C =10131.334920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.079 0.921 4 C -0.054 4.054 5 S -0.311 6.311 6 C -0.053 4.053 7 C 0.087 3.913 8 H 0.048 0.952 9 N -0.678 5.678 10 C 0.113 3.887 11 C -0.186 4.186 12 C -0.069 4.069 13 C -0.194 4.194 14 C 0.156 3.844 15 O -0.177 6.177 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.235 4.235 25 C -0.048 4.048 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.349 0.651 34 H 0.028 0.972 35 H 0.070 0.930 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.270 0.730 39 H 0.126 0.874 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.575 6.826 -13.226 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 H 0.098 0.902 4 C -0.203 4.203 5 S -0.084 6.084 6 C -0.202 4.202 7 C -0.025 4.025 8 H 0.066 0.934 9 N -0.313 5.313 10 C -0.015 4.015 11 C -0.187 4.187 12 C -0.088 4.088 13 C -0.213 4.213 14 C 0.102 3.898 15 O -0.080 6.080 16 C -0.468 4.468 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.255 4.255 25 C -0.067 4.067 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.171 0.829 34 H 0.047 0.953 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.133 0.867 38 H 0.080 0.920 39 H 0.144 0.856 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.263 6.073 -13.760 20.728 hybrid contribution -1.058 0.121 0.937 1.418 sum 13.205 6.195 -12.823 19.421 Atomic orbital electron populations 1.21920 0.93279 1.04162 1.01260 1.21689 0.97900 0.99778 0.91993 0.90231 1.24225 0.95381 1.01014 0.99638 1.87975 1.25597 1.76648 1.18225 1.24271 1.00762 1.01553 0.93564 1.22016 0.91643 0.94051 0.94805 0.93366 1.61056 1.12113 1.42725 1.15445 1.20696 0.94967 0.98705 0.87131 1.19063 1.00618 0.94546 1.04501 1.20466 0.94509 0.97678 0.96103 1.20155 1.00127 0.94457 1.06608 1.19412 0.87820 0.92804 0.89771 1.83988 1.37285 1.28078 1.58684 1.21329 1.07210 0.80971 1.37293 0.89038 1.25294 0.94833 1.00309 0.96058 1.70037 1.12562 1.34626 1.32501 0.85715 0.78188 0.80481 0.79082 1.19859 1.20236 1.19144 1.21174 0.99609 1.00841 1.03857 1.20559 0.95009 0.94774 0.96356 0.92413 0.92730 0.89784 0.88842 0.88032 0.88239 0.87893 0.82855 0.95334 0.91111 0.87570 0.86654 0.91991 0.85594 0.87549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 7.71 37.16 0.29 -0.93 16 2 C -0.09 -0.77 3.17 -90.30 -0.29 -1.05 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 4 C -0.05 -0.45 6.88 37.82 0.26 -0.19 16 5 S -0.31 -3.26 23.27 -107.50 -2.50 -5.76 16 6 C -0.05 -0.52 5.90 37.82 0.22 -0.30 16 7 C 0.09 0.81 2.96 -67.40 -0.20 0.61 16 8 H 0.05 0.45 8.07 -51.93 -0.42 0.03 16 9 N -0.68 -7.41 4.87 -107.65 -0.52 -7.93 16 10 C 0.11 1.39 5.57 -4.97 -0.03 1.36 16 11 C -0.19 -2.98 5.40 -104.58 -0.56 -3.54 16 12 C -0.07 -1.16 9.69 -39.61 -0.38 -1.55 16 13 C -0.19 -3.99 9.99 -39.39 -0.39 -4.39 16 14 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 15 O -0.18 -5.02 9.76 0.04 0.00 -5.02 16 16 C -0.39 -10.87 9.46 30.88 0.29 -10.58 16 17 H 0.09 2.35 5.24 -52.49 -0.28 2.08 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.15 13.67 55.48 0.76 -24.39 16 20 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 24 C -0.24 -5.03 9.15 -39.39 -0.36 -5.39 16 25 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 26 H 0.06 0.47 7.02 -51.93 -0.36 0.10 16 27 H 0.05 0.39 8.08 -51.93 -0.42 -0.03 16 28 H 0.08 0.85 7.23 -51.93 -0.38 0.47 16 29 H 0.09 0.77 7.85 -51.93 -0.41 0.37 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.10 1.10 8.05 -51.93 -0.42 0.69 16 33 H 0.35 3.79 6.25 -39.30 -0.25 3.54 16 34 H 0.03 0.33 8.06 -51.93 -0.42 -0.09 16 35 H 0.07 0.84 7.22 -51.93 -0.37 0.46 16 36 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 37 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 38 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.13 2.72 5.67 -52.49 -0.30 2.43 16 40 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 335.81 15.07 5.06 5.06 Total: -1.00 -29.58 335.81 -9.81 -39.39 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.69 Total: 6.05 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -1.89 Total: -22.75 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.23 Total: -32.32 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: 0.00 Total: -5.02 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -2.50 Total: -5.76 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.58 -9.81 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286024127.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.611 kcal (2) G-P(sol) polarization free energy of solvation -29.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds