Wall clock time and date at job start Tue Mar 31 2020 07:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 108.83044 * 2 1 4 4 C 1.54266 * 108.75038 * 241.54240 * 2 1 3 5 5 S 1.83954 * 102.58026 * 214.72758 * 4 2 1 6 6 C 1.83966 * 94.80662 * 34.49375 * 5 4 2 7 7 C 1.52327 * 108.87028 * 118.53880 * 2 1 3 8 8 H 1.09005 * 108.86506 * 241.34741 * 7 2 1 9 9 N 1.46899 * 108.86997 * 359.84970 * 7 2 1 10 10 C 1.46907 * 110.99867 * 189.81641 * 9 7 2 11 11 C 1.50702 * 109.46683 * 180.02562 * 10 9 7 12 12 C 1.38299 * 119.92884 * 269.72639 * 11 10 9 13 13 C 1.38098 * 120.06621 * 179.72729 * 12 11 10 14 14 C 1.38883 * 119.93157 * 0.57236 * 13 12 11 15 15 O 1.35753 * 120.07080 * 179.67986 * 14 13 12 16 16 C 1.34829 * 117.00005 * 183.00897 * 15 14 13 17 17 H 1.07997 * 119.99803 * 5.52535 * 16 15 14 18 18 C 1.38650 * 119.99966 * 185.52677 * 16 15 14 19 19 N 1.31552 * 119.99765 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99953 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46802 * 89.99916 * 20 18 16 22 22 H 1.48500 * 109.47077 * 209.99955 * 20 18 16 23 23 H 1.48498 * 109.47151 * 330.00125 * 20 18 16 24 24 C 1.38879 * 119.85880 * 359.70025 * 14 13 12 25 25 C 1.38100 * 119.93302 * 0.02562 * 24 14 13 26 26 H 1.08997 * 109.46809 * 310.27514 * 1 2 3 27 27 H 1.09001 * 109.47520 * 70.27937 * 1 2 3 28 28 H 1.09006 * 109.47094 * 190.28457 * 1 2 3 29 29 H 1.09003 * 110.78758 * 332.99965 * 4 2 1 30 30 H 1.08996 * 110.78863 * 96.45152 * 4 2 1 31 31 H 1.08994 * 110.78579 * 207.23154 * 6 5 4 32 32 H 1.08999 * 110.78539 * 83.77734 * 6 5 4 33 33 H 1.00889 * 110.99945 * 313.77214 * 9 7 2 34 34 H 1.08994 * 109.46959 * 60.00626 * 10 9 7 35 35 H 1.08999 * 109.47233 * 300.00401 * 10 9 7 36 36 H 1.08001 * 119.97002 * 359.97438 * 12 11 10 37 37 H 1.08006 * 120.03473 * 180.26823 * 13 12 11 38 38 H 0.97004 * 119.99846 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.03285 * 180.02562 * 24 14 13 40 40 H 1.07999 * 119.96458 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8818 1.0317 0.0000 4 6 2.0259 -0.6961 -1.2843 5 16 3.5519 -1.5500 -0.7135 6 6 2.9019 -1.9204 0.9672 7 6 2.0227 -0.6886 1.2663 8 1 2.6047 0.0237 1.8512 9 7 0.8610 -1.1150 2.0579 10 6 1.2725 -1.5739 3.3914 11 6 0.0569 -2.0027 4.1722 12 6 -0.6190 -1.0852 4.9557 13 6 -1.7365 -1.4737 5.6680 14 6 -2.1745 -2.7902 5.6062 15 8 -3.2689 -3.1768 6.3103 16 6 -3.6028 -4.4819 6.2549 17 1 -2.9598 -5.1825 5.7431 18 6 -4.7717 -4.9244 6.8551 19 7 -5.5547 -4.0710 7.4789 20 14 -5.2340 -6.7327 6.7790 21 1 -4.6580 -7.4405 7.9506 22 1 -6.7128 -6.8668 6.7975 23 1 -4.6985 -7.3284 5.5286 24 6 -1.4902 -3.7105 4.8229 25 6 -0.3767 -3.3144 4.1085 26 1 -0.3633 0.6643 0.7840 27 1 -0.3634 0.3468 -0.9674 28 1 -0.3633 -1.0112 0.1835 29 1 1.2904 -1.4165 -1.6425 30 1 2.2587 0.0371 -2.0565 31 1 3.7157 -1.9990 1.6880 32 1 2.3023 -2.8306 0.9581 33 1 0.1780 -0.3755 2.1248 34 1 1.7739 -0.7610 3.9166 35 1 1.9555 -2.4173 3.2907 36 1 -0.2748 -0.0628 5.0076 37 1 -2.2665 -0.7557 6.2763 38 1 -6.3723 -4.3806 7.8991 39 1 -1.8286 -4.7349 4.7724 40 1 0.1556 -4.0296 3.4989 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286024127.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:53 Heat of formation + Delta-G solvation = -14.797702 kcal Electronic energy + Delta-G solvation = -20611.564807 eV Core-core repulsion = 17517.375468 eV Total energy + Delta-G solvation = -3094.189339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.80853 -39.56156 -38.19586 -34.86319 -34.14694 -31.77372 -31.47250 -30.21236 -27.99809 -27.34627 -25.68338 -24.07512 -23.59127 -21.94173 -20.10467 -19.82630 -18.83183 -17.94289 -17.27107 -16.53202 -16.41207 -16.10630 -15.92906 -15.49803 -15.44748 -14.97130 -14.80469 -14.38255 -14.27134 -14.21268 -13.67043 -13.50084 -13.15375 -13.00406 -12.83283 -12.81021 -12.44998 -12.42296 -12.25634 -12.12683 -11.94316 -11.80438 -11.66112 -11.17128 -10.89890 -10.78638 -9.75370 -9.34272 -8.88398 -8.75425 -8.47341 -6.15132 0.62670 0.69323 0.94416 1.35104 1.35272 1.44158 1.52429 2.17893 2.79066 3.10972 3.42131 3.48206 3.53382 3.82975 3.92771 4.08685 4.08726 4.22439 4.24766 4.26167 4.49718 4.54706 4.62788 4.67067 4.69041 4.75590 4.78539 4.84639 4.85956 5.10895 5.11532 5.16170 5.17019 5.32664 5.52059 5.58912 5.74215 5.83956 6.03658 6.07310 6.26731 6.46119 6.97909 7.79268 8.76081 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.027988 B = 0.002841 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.204819 B = 9852.015476 C =10131.334920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.093 0.907 4 C -0.045 4.045 5 S -0.351 6.351 6 C -0.047 4.047 7 C 0.091 3.909 8 H 0.058 0.942 9 N -0.682 5.682 10 C 0.117 3.883 11 C -0.155 4.155 12 C -0.059 4.059 13 C -0.205 4.205 14 C 0.113 3.887 15 O -0.233 6.233 16 C -0.413 4.413 17 H 0.100 0.900 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.017 2.983 21 H -0.263 1.263 22 H -0.271 1.271 23 H -0.253 1.253 24 C -0.245 4.245 25 C -0.049 4.049 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.352 0.648 34 H 0.049 0.951 35 H 0.082 0.918 36 H 0.147 0.853 37 H 0.111 0.889 38 H 0.273 0.727 39 H 0.114 0.886 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.968 7.456 -15.117 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.111 0.889 4 C -0.192 4.192 5 S -0.125 6.125 6 C -0.195 4.195 7 C -0.020 4.020 8 H 0.075 0.925 9 N -0.318 5.318 10 C -0.011 4.011 11 C -0.156 4.156 12 C -0.077 4.077 13 C -0.225 4.225 14 C 0.063 3.937 15 O -0.140 6.140 16 C -0.489 4.489 17 H 0.118 0.882 18 C -0.220 4.220 19 N -0.560 5.560 20 Si 0.836 3.164 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.177 1.177 24 C -0.265 4.265 25 C -0.068 4.068 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.135 0.865 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.174 0.826 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.165 0.835 37 H 0.130 0.870 38 H 0.082 0.918 39 H 0.132 0.868 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 16.713 6.727 -15.688 23.889 hybrid contribution -1.494 0.138 1.322 2.000 sum 15.219 6.864 -14.366 22.026 Atomic orbital electron populations 1.21858 0.93265 1.03056 1.02046 1.21680 0.97711 1.00281 0.91315 0.88862 1.24300 0.93802 1.00998 1.00144 1.88156 1.27533 1.77319 1.19492 1.24252 1.00880 1.01317 0.93051 1.22041 0.90891 0.93984 0.95119 0.92455 1.60970 1.12941 1.43344 1.14561 1.20685 0.92929 0.99974 0.87555 1.19577 1.00403 0.93374 1.02272 1.20888 0.92670 0.99786 0.94390 1.20435 1.01438 0.93308 1.07276 1.19971 0.87807 0.94696 0.91216 1.83946 1.39921 1.28400 1.61730 1.21793 1.07860 0.81558 1.37661 0.88247 1.26568 0.94439 1.05569 0.95426 1.70180 1.13591 1.37253 1.34928 0.84607 0.78006 0.73978 0.79763 1.18811 1.19560 1.17688 1.21254 1.00791 1.00075 1.04339 1.20887 0.93812 0.96385 0.95708 0.92064 0.91676 0.91665 0.88974 0.86450 0.87410 0.88862 0.82552 0.93337 0.90011 0.83514 0.87038 0.91844 0.86773 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 7.71 71.98 0.55 -1.37 16 2 C -0.09 -1.15 3.17 -10.59 -0.03 -1.19 16 3 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.04 -0.61 6.88 72.41 0.50 -0.11 16 5 S -0.35 -6.60 23.27 -56.49 -1.31 -7.92 16 6 C -0.05 -0.77 5.90 72.41 0.43 -0.34 16 7 C 0.09 1.36 2.96 45.12 0.13 1.49 16 8 H 0.06 0.81 8.07 -2.38 -0.02 0.79 16 9 N -0.68 -12.19 4.87 -494.50 -2.41 -14.59 16 10 C 0.12 2.33 5.57 85.56 0.48 2.80 16 11 C -0.16 -4.44 5.40 -19.83 -0.11 -4.54 16 12 C -0.06 -1.82 9.69 22.25 0.22 -1.61 16 13 C -0.21 -8.48 9.99 22.39 0.22 -8.25 16 14 C 0.11 5.60 6.65 22.58 0.15 5.75 16 15 O -0.23 -14.07 9.76 -22.76 -0.22 -14.29 16 16 C -0.41 -24.13 9.46 67.92 0.64 -23.49 16 17 H 0.10 5.36 5.24 -2.91 -0.02 5.34 16 18 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 19 N -0.92 -56.70 13.67 21.61 0.30 -56.41 16 20 Si 1.02 42.97 29.55 68.60 2.03 45.00 16 21 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 23 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 24 C -0.25 -10.62 9.15 22.39 0.20 -10.41 16 25 C -0.05 -1.66 9.69 22.25 0.22 -1.44 16 26 H 0.06 0.79 7.02 -2.39 -0.02 0.77 16 27 H 0.06 0.74 8.08 -2.39 -0.02 0.72 16 28 H 0.06 1.15 7.23 -2.38 -0.02 1.13 16 29 H 0.09 1.30 7.85 -2.39 -0.02 1.28 16 30 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.09 1.74 8.05 -2.39 -0.02 1.72 16 33 H 0.35 6.19 6.25 -89.70 -0.56 5.63 16 34 H 0.05 0.84 8.06 -2.39 -0.02 0.82 16 35 H 0.08 1.54 7.22 -2.39 -0.02 1.52 16 36 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 37 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 38 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.11 5.11 5.67 -2.91 -0.02 5.09 16 40 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -69.22 335.81 2.93 -66.29 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.48 Total: 25.47 kcal Atomic # 6 Polarization: -47.61 SS G_CDS: 4.07 Total: -43.54 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: -2.11 Total: -71.00 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.22 Total: -14.29 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: -6.60 SS G_CDS: -1.31 Total: -7.92 kcal Total: -69.22 2.93 -66.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286024127.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.490 kcal (2) G-P(sol) polarization free energy of solvation -69.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds