Wall clock time and date at job start Tue Mar 31 2020 07:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 108.83242 * 2 1 4 4 C 1.54269 * 108.86798 * 118.52859 * 2 1 3 5 5 S 1.83951 * 102.58084 * 145.20251 * 4 2 1 6 6 C 1.83956 * 94.80708 * 325.50365 * 5 4 2 7 7 C 1.52337 * 108.75332 * 241.52752 * 2 1 3 8 8 H 1.09000 * 108.86569 * 118.44036 * 7 2 1 9 9 N 1.46894 * 108.86555 * 0.08382 * 7 2 1 10 10 C 1.46903 * 111.00104 * 165.33814 * 9 7 2 11 11 C 1.50699 * 109.47560 * 179.97438 * 10 9 7 12 12 C 1.38295 * 119.93068 * 269.72768 * 11 10 9 13 13 C 1.38104 * 120.07067 * 179.72402 * 12 11 10 14 14 C 1.38881 * 119.92449 * 0.54759 * 13 12 11 15 15 O 1.35750 * 120.06505 * 179.74906 * 14 13 12 16 16 C 1.34829 * 116.99802 * 185.11147 * 15 14 13 17 17 H 1.08001 * 120.00201 * 354.90921 * 16 15 14 18 18 C 1.38656 * 120.00178 * 174.90887 * 16 15 14 19 19 N 1.31555 * 119.99597 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00126 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46967 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.46953 * 119.99694 * 20 18 16 23 23 H 1.48497 * 109.46831 * 239.99520 * 20 18 16 24 24 C 1.38876 * 119.86432 * 359.72306 * 14 13 12 25 25 C 1.38103 * 119.92993 * 0.02562 * 24 14 13 26 26 H 1.09005 * 109.46767 * 292.28287 * 1 2 3 27 27 H 1.08998 * 109.46882 * 52.27674 * 1 2 3 28 28 H 1.08996 * 109.47292 * 172.28080 * 1 2 3 29 29 H 1.09000 * 110.78058 * 263.47623 * 4 2 1 30 30 H 1.08995 * 110.78365 * 26.73733 * 4 2 1 31 31 H 1.09001 * 110.78840 * 152.76763 * 6 5 4 32 32 H 1.09000 * 110.79027 * 276.02974 * 6 5 4 33 33 H 1.00902 * 111.00856 * 41.38298 * 9 7 2 34 34 H 1.09001 * 109.46908 * 299.99993 * 10 9 7 35 35 H 1.09004 * 109.47075 * 59.99522 * 10 9 7 36 36 H 1.07999 * 119.96782 * 0.02562 * 12 11 10 37 37 H 1.07995 * 120.03807 * 180.27260 * 13 12 11 38 38 H 0.97007 * 119.99883 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.03687 * 180.02562 * 24 14 13 40 40 H 1.08000 * 119.96475 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8819 1.0316 0.0000 4 6 2.0289 -0.6972 1.2825 5 16 3.5536 -1.5507 0.7074 6 6 2.8996 -1.9197 -0.9719 7 6 2.0198 -0.6877 -1.2680 8 1 2.5983 0.0258 -1.8550 9 7 0.8563 -1.1134 -2.0572 10 6 1.2496 -1.4623 -3.4289 11 6 0.0328 -1.8937 -4.2062 12 6 -0.3371 -3.2261 -4.2255 13 6 -1.4550 -3.6238 -4.9322 14 6 -2.2014 -2.6857 -5.6333 15 8 -3.2978 -3.0743 -6.3331 16 6 -3.9149 -2.1334 -7.0760 17 1 -3.5830 -1.1067 -7.0314 18 6 -4.9756 -2.4841 -7.8973 19 7 -5.3795 -3.7349 -7.9519 20 14 -5.8301 -1.1807 -8.9271 21 1 -5.1899 0.1377 -8.6876 22 1 -5.7161 -1.5329 -10.3652 23 1 -7.2638 -1.1107 -8.5467 24 6 -1.8242 -1.3493 -5.6165 25 6 -0.7082 -0.9572 -4.9037 26 1 -0.3633 0.3897 0.9510 27 1 -0.3633 0.6288 -0.8129 28 1 -0.3634 -1.0183 -0.1380 29 1 2.2636 0.0355 2.0547 30 1 1.2928 -1.4153 1.6437 31 1 3.7117 -1.9978 -1.6948 32 1 2.3028 -2.8317 -0.9629 33 1 0.1392 -0.4035 -2.0562 34 1 1.6994 -0.5937 -3.9099 35 1 1.9721 -2.2781 -3.4033 36 1 0.2461 -3.9558 -3.6833 37 1 -1.7458 -4.6638 -4.9432 38 1 -6.1219 -3.9802 -8.5262 39 1 -2.4028 -0.6173 -6.1604 40 1 -0.4141 0.0819 -4.8906 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286024130.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:57 Heat of formation + Delta-G solvation = 3.712007 kcal Electronic energy + Delta-G solvation = -20591.658729 eV Core-core repulsion = 17498.272031 eV Total energy + Delta-G solvation = -3093.386698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.27244 -38.56344 -36.64513 -33.76870 -32.28236 -30.51448 -30.16209 -29.17351 -27.09063 -25.57820 -24.54337 -23.21485 -21.98095 -20.45201 -19.39249 -18.01690 -17.31712 -16.79813 -16.51622 -15.41794 -15.01168 -14.81837 -14.56105 -14.25295 -13.95320 -13.65662 -13.57427 -13.42088 -12.92520 -12.72804 -12.47393 -12.40303 -12.10819 -12.04673 -11.66047 -11.54354 -11.31362 -11.18944 -11.09220 -10.80098 -10.63578 -10.57942 -10.43794 -10.15244 -9.35972 -8.87099 -8.48543 -8.19878 -7.95401 -7.21329 -6.47939 -4.06819 1.66157 2.05874 2.19825 2.25910 3.09755 3.11359 3.16916 3.93939 4.07058 4.16693 4.46186 4.58950 4.63565 4.91211 4.96069 5.07135 5.17007 5.25756 5.26037 5.29891 5.35867 5.39320 5.46926 5.52549 5.68698 5.75862 5.78308 5.78997 5.87979 6.13246 6.18956 6.40116 6.67920 6.85962 6.94680 7.03423 7.23356 7.28248 7.39136 7.42581 7.80336 7.97165 8.97815 9.68053 10.70142 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.035928 B = 0.002737 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.149858 B =10226.923243 C =10526.632671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 H 0.080 0.920 4 C -0.054 4.054 5 S -0.311 6.311 6 C -0.052 4.052 7 C 0.086 3.914 8 H 0.050 0.950 9 N -0.680 5.680 10 C 0.113 3.887 11 C -0.185 4.185 12 C -0.051 4.051 13 C -0.194 4.194 14 C 0.157 3.843 15 O -0.178 6.178 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.235 4.235 25 C -0.066 4.066 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.350 0.650 34 H 0.028 0.972 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.270 0.730 39 H 0.126 0.874 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.135 7.686 13.574 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 H 0.098 0.902 4 C -0.203 4.203 5 S -0.084 6.084 6 C -0.200 4.200 7 C -0.025 4.025 8 H 0.068 0.932 9 N -0.316 5.316 10 C -0.015 4.015 11 C -0.187 4.187 12 C -0.070 4.070 13 C -0.214 4.214 14 C 0.102 3.898 15 O -0.081 6.081 16 C -0.468 4.468 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.254 4.254 25 C -0.085 4.085 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.120 0.880 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.173 0.827 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.080 0.920 39 H 0.143 0.857 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.942 6.455 14.190 20.914 hybrid contribution -1.312 1.806 -1.495 2.687 sum 12.630 8.261 12.695 19.721 Atomic orbital electron populations 1.21932 0.93396 1.04018 1.01348 1.21711 0.97784 0.99888 0.92106 0.90171 1.24207 0.95457 1.01026 0.99578 1.87973 1.25485 1.76687 1.18259 1.24263 1.00731 1.01560 0.93478 1.22021 0.91787 0.94035 0.94706 0.93249 1.61081 1.10186 1.47454 1.12916 1.20696 0.95178 0.98942 0.86657 1.19067 1.00242 0.93949 1.05397 1.20452 0.95215 0.94818 0.96545 1.20230 0.97872 0.98743 1.04519 1.19406 0.87009 0.92240 0.91095 1.83982 1.33558 1.38028 1.52520 1.21371 1.13985 0.89705 1.21754 0.89037 1.25296 0.96659 0.97422 0.97155 1.70049 1.26077 1.16470 1.37079 0.85649 0.79085 0.79507 0.79191 1.19122 1.20119 1.20122 1.21116 1.00852 0.96342 1.07091 1.20579 0.94411 0.97536 0.95965 0.92590 0.92288 0.89958 0.88046 0.88844 0.88283 0.87865 0.82682 0.95362 0.91116 0.87090 0.86566 0.92037 0.85657 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 7.65 37.16 0.28 -0.92 16 2 C -0.09 -0.77 3.18 -90.29 -0.29 -1.06 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.05 -0.44 6.91 37.82 0.26 -0.18 16 5 S -0.31 -3.22 23.27 -107.50 -2.50 -5.72 16 6 C -0.05 -0.50 6.16 37.81 0.23 -0.27 16 7 C 0.09 0.81 2.96 -67.40 -0.20 0.61 16 8 H 0.05 0.47 7.97 -51.93 -0.41 0.05 16 9 N -0.68 -7.45 5.05 -107.65 -0.54 -7.99 16 10 C 0.11 1.40 5.58 -4.97 -0.03 1.37 16 11 C -0.19 -2.97 5.40 -104.58 -0.56 -3.54 16 12 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 13 C -0.19 -4.04 9.99 -39.39 -0.39 -4.44 16 14 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 15 O -0.18 -5.03 9.76 0.05 0.00 -5.03 16 16 C -0.39 -10.84 9.49 30.89 0.29 -10.55 16 17 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 18 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.13 13.67 55.48 0.76 -24.37 16 20 Si 0.94 20.31 29.55 -169.99 -5.02 15.28 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 C -0.23 -4.96 9.17 -39.39 -0.36 -5.32 16 25 C -0.07 -1.15 9.69 -39.61 -0.38 -1.53 16 26 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 27 H 0.06 0.48 6.84 -51.93 -0.36 0.12 16 28 H 0.08 0.80 7.35 -51.93 -0.38 0.42 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.75 7.85 -51.93 -0.41 0.35 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 1.09 8.06 -51.93 -0.42 0.67 16 33 H 0.35 3.83 5.85 -39.29 -0.23 3.60 16 34 H 0.03 0.33 8.03 -51.93 -0.42 -0.08 16 35 H 0.07 0.83 7.40 -51.93 -0.38 0.45 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.12 2.36 8.06 -52.49 -0.42 1.93 16 38 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.13 2.67 5.64 -52.49 -0.30 2.38 16 40 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 335.83 15.07 5.06 5.06 Total: -1.00 -29.61 335.83 -9.80 -39.41 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.67 Total: 6.04 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -1.89 Total: -22.68 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.21 Total: -32.36 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: 0.00 Total: -5.03 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.50 Total: -5.72 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.61 -9.80 -39.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286024130.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.125 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds