Wall clock time and date at job start Tue Mar 31 2020 07:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 108.83242 * 2 1 4 4 C 1.54269 * 108.86798 * 118.52859 * 2 1 3 5 5 S 1.83951 * 102.58084 * 145.20251 * 4 2 1 6 6 C 1.83956 * 94.80708 * 325.50365 * 5 4 2 7 7 C 1.52337 * 108.75332 * 241.52752 * 2 1 3 8 8 H 1.09000 * 108.86569 * 118.44036 * 7 2 1 9 9 N 1.46894 * 108.86555 * 0.08382 * 7 2 1 10 10 C 1.46903 * 111.00104 * 165.33814 * 9 7 2 11 11 C 1.50699 * 109.47560 * 179.97438 * 10 9 7 12 12 C 1.38295 * 119.93068 * 269.72768 * 11 10 9 13 13 C 1.38104 * 120.07067 * 179.72402 * 12 11 10 14 14 C 1.38881 * 119.92449 * 0.54759 * 13 12 11 15 15 O 1.35750 * 120.06505 * 179.74906 * 14 13 12 16 16 C 1.34829 * 116.99802 * 185.11147 * 15 14 13 17 17 H 1.08001 * 120.00201 * 354.90921 * 16 15 14 18 18 C 1.38656 * 120.00178 * 174.90887 * 16 15 14 19 19 N 1.31555 * 119.99597 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00126 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46967 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.46953 * 119.99694 * 20 18 16 23 23 H 1.48497 * 109.46831 * 239.99520 * 20 18 16 24 24 C 1.38876 * 119.86432 * 359.72306 * 14 13 12 25 25 C 1.38103 * 119.92993 * 0.02562 * 24 14 13 26 26 H 1.09005 * 109.46767 * 292.28287 * 1 2 3 27 27 H 1.08998 * 109.46882 * 52.27674 * 1 2 3 28 28 H 1.08996 * 109.47292 * 172.28080 * 1 2 3 29 29 H 1.09000 * 110.78058 * 263.47623 * 4 2 1 30 30 H 1.08995 * 110.78365 * 26.73733 * 4 2 1 31 31 H 1.09001 * 110.78840 * 152.76763 * 6 5 4 32 32 H 1.09000 * 110.79027 * 276.02974 * 6 5 4 33 33 H 1.00902 * 111.00856 * 41.38298 * 9 7 2 34 34 H 1.09001 * 109.46908 * 299.99993 * 10 9 7 35 35 H 1.09004 * 109.47075 * 59.99522 * 10 9 7 36 36 H 1.07999 * 119.96782 * 0.02562 * 12 11 10 37 37 H 1.07995 * 120.03807 * 180.27260 * 13 12 11 38 38 H 0.97007 * 119.99883 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.03687 * 180.02562 * 24 14 13 40 40 H 1.08000 * 119.96475 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8819 1.0316 0.0000 4 6 2.0289 -0.6972 1.2825 5 16 3.5536 -1.5507 0.7074 6 6 2.8996 -1.9197 -0.9719 7 6 2.0198 -0.6877 -1.2680 8 1 2.5983 0.0258 -1.8550 9 7 0.8563 -1.1134 -2.0572 10 6 1.2496 -1.4623 -3.4289 11 6 0.0328 -1.8937 -4.2062 12 6 -0.3371 -3.2261 -4.2255 13 6 -1.4550 -3.6238 -4.9322 14 6 -2.2014 -2.6857 -5.6333 15 8 -3.2978 -3.0743 -6.3331 16 6 -3.9149 -2.1334 -7.0760 17 1 -3.5830 -1.1067 -7.0314 18 6 -4.9756 -2.4841 -7.8973 19 7 -5.3795 -3.7349 -7.9519 20 14 -5.8301 -1.1807 -8.9271 21 1 -5.1899 0.1377 -8.6876 22 1 -5.7161 -1.5329 -10.3652 23 1 -7.2638 -1.1107 -8.5467 24 6 -1.8242 -1.3493 -5.6165 25 6 -0.7082 -0.9572 -4.9037 26 1 -0.3633 0.3897 0.9510 27 1 -0.3633 0.6288 -0.8129 28 1 -0.3634 -1.0183 -0.1380 29 1 2.2636 0.0355 2.0547 30 1 1.2928 -1.4153 1.6437 31 1 3.7117 -1.9978 -1.6948 32 1 2.3028 -2.8317 -0.9629 33 1 0.1392 -0.4035 -2.0562 34 1 1.6994 -0.5937 -3.9099 35 1 1.9721 -2.2781 -3.4033 36 1 0.2461 -3.9558 -3.6833 37 1 -1.7458 -4.6638 -4.9432 38 1 -6.1219 -3.9802 -8.5262 39 1 -2.4028 -0.6173 -6.1604 40 1 -0.4141 0.0819 -4.8906 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286024130.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:56 Heat of formation + Delta-G solvation = -13.352619 kcal Electronic energy + Delta-G solvation = -20592.398707 eV Core-core repulsion = 17498.272031 eV Total energy + Delta-G solvation = -3094.126676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.81272 -39.57839 -38.20266 -34.85001 -34.13763 -31.79531 -31.45530 -30.25635 -28.01142 -27.32863 -25.65328 -24.11519 -23.59264 -21.93654 -20.12370 -19.82593 -18.87681 -17.89834 -17.25375 -16.53428 -16.35515 -16.19632 -15.89438 -15.48771 -15.42251 -15.19856 -14.70325 -14.36511 -14.26062 -14.10574 -13.76015 -13.48481 -13.18897 -12.99564 -12.85058 -12.81759 -12.44086 -12.40130 -12.27484 -12.10314 -11.94054 -11.80606 -11.66903 -11.15725 -10.90156 -10.79548 -9.75807 -9.35442 -8.88845 -8.74786 -8.46993 -6.15043 0.62494 0.68807 0.95142 1.35140 1.35759 1.43487 1.53444 2.17704 2.79239 3.10949 3.41122 3.48588 3.55454 3.81619 3.91876 4.06820 4.08844 4.20755 4.25158 4.27847 4.48363 4.53482 4.63470 4.65868 4.71062 4.75548 4.79123 4.82585 4.85429 5.09544 5.11428 5.14425 5.16598 5.32983 5.48200 5.59680 5.73281 5.82966 6.03899 6.07001 6.26538 6.45594 6.98063 7.79927 8.76694 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.035928 B = 0.002737 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.149858 B =10226.923243 C =10526.632671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.093 0.907 4 C -0.044 4.044 5 S -0.351 6.351 6 C -0.045 4.045 7 C 0.090 3.910 8 H 0.057 0.943 9 N -0.684 5.684 10 C 0.117 3.883 11 C -0.155 4.155 12 C -0.047 4.047 13 C -0.207 4.207 14 C 0.114 3.886 15 O -0.235 6.235 16 C -0.412 4.412 17 H 0.102 0.898 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.250 1.250 22 H -0.269 1.269 23 H -0.269 1.269 24 C -0.243 4.243 25 C -0.062 4.062 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.352 0.648 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.143 0.857 37 H 0.109 0.891 38 H 0.272 0.728 39 H 0.117 0.883 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.216 10.233 14.885 23.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.111 0.889 4 C -0.192 4.192 5 S -0.125 6.125 6 C -0.194 4.194 7 C -0.021 4.021 8 H 0.075 0.925 9 N -0.320 5.320 10 C -0.011 4.011 11 C -0.156 4.156 12 C -0.065 4.065 13 C -0.227 4.227 14 C 0.064 3.936 15 O -0.141 6.141 16 C -0.488 4.488 17 H 0.119 0.881 18 C -0.222 4.222 19 N -0.561 5.561 20 Si 0.838 3.162 21 H -0.174 1.174 22 H -0.194 1.194 23 H -0.194 1.194 24 C -0.262 4.262 25 C -0.080 4.080 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.135 0.865 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.113 0.887 33 H 0.176 0.824 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.160 0.840 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.135 0.865 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 16.079 9.021 15.546 24.117 hybrid contribution -1.640 1.029 -1.624 2.527 sum 14.439 10.050 13.923 22.435 Atomic orbital electron populations 1.21874 0.93318 1.02994 1.02132 1.21700 0.97656 1.00348 0.91419 0.88871 1.24280 0.93890 1.01022 1.00043 1.88156 1.27447 1.77361 1.19503 1.24240 1.00831 1.01324 0.92973 1.22048 0.91012 0.93987 0.95050 0.92475 1.61001 1.10996 1.48075 1.11977 1.20688 0.93164 1.00204 0.87066 1.19578 1.00087 0.92996 1.02948 1.20830 0.93877 0.96387 0.95435 1.20468 0.98949 0.98284 1.04962 1.19950 0.87289 0.94197 0.92199 1.83945 1.36111 1.39172 1.54907 1.21857 1.14483 0.90306 1.22141 0.88063 1.26598 0.97249 0.99969 0.98340 1.70196 1.27568 1.19110 1.39185 0.84525 0.77783 0.76809 0.77062 1.17363 1.19424 1.19370 1.21224 1.02160 0.95068 1.07765 1.20946 0.92800 0.99722 0.94562 0.91436 0.92071 0.91682 0.86472 0.88877 0.87498 0.88744 0.82446 0.93610 0.89819 0.83955 0.87283 0.91874 0.86529 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 7.65 71.98 0.55 -1.34 16 2 C -0.09 -1.16 3.18 -10.58 -0.03 -1.19 16 3 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.04 -0.60 6.91 72.41 0.50 -0.10 16 5 S -0.35 -6.53 23.27 -56.49 -1.31 -7.84 16 6 C -0.05 -0.74 6.16 72.41 0.45 -0.30 16 7 C 0.09 1.35 2.96 45.12 0.13 1.49 16 8 H 0.06 0.82 7.97 -2.39 -0.02 0.80 16 9 N -0.68 -12.26 5.05 -494.51 -2.50 -14.76 16 10 C 0.12 2.35 5.58 85.56 0.48 2.82 16 11 C -0.16 -4.44 5.40 -19.84 -0.11 -4.55 16 12 C -0.05 -1.52 9.69 22.25 0.22 -1.31 16 13 C -0.21 -8.77 9.99 22.39 0.22 -8.55 16 14 C 0.11 5.63 6.65 22.58 0.15 5.78 16 15 O -0.23 -14.15 9.76 -22.73 -0.22 -14.37 16 16 C -0.41 -23.92 9.49 67.92 0.64 -23.28 16 17 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 18 C -0.02 -1.38 5.49 84.83 0.47 -0.92 16 19 N -0.92 -56.79 13.67 21.61 0.30 -56.50 16 20 Si 1.02 42.65 29.55 68.60 2.03 44.68 16 21 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 24 C -0.24 -10.27 9.17 22.39 0.21 -10.07 16 25 C -0.06 -1.98 9.69 22.25 0.22 -1.76 16 26 H 0.07 0.74 8.12 -2.38 -0.02 0.72 16 27 H 0.06 0.78 6.84 -2.39 -0.02 0.77 16 28 H 0.06 1.10 7.35 -2.39 -0.02 1.08 16 29 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.27 7.85 -2.39 -0.02 1.25 16 31 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.09 1.73 8.06 -2.39 -0.02 1.72 16 33 H 0.35 6.29 5.85 -89.69 -0.52 5.77 16 34 H 0.05 0.82 8.03 -2.39 -0.02 0.80 16 35 H 0.08 1.55 7.40 -2.38 -0.02 1.53 16 36 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 37 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 38 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 39 H 0.12 5.05 5.64 -2.91 -0.02 5.03 16 40 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -69.19 335.83 2.89 -66.30 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.52 Total: 25.77 kcal Atomic # 6 Polarization: -47.37 SS G_CDS: 4.09 Total: -43.28 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -2.20 Total: -71.26 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.22 Total: -14.37 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: -6.53 SS G_CDS: -1.31 Total: -7.84 kcal Total: -69.19 2.89 -66.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286024130.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.948 kcal (2) G-P(sol) polarization free energy of solvation -69.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds