Wall clock time and date at job start Tue Mar 31 2020 07:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46976 * 2 1 4 4 S 1.81401 * 109.47272 * 119.99706 * 2 1 3 5 5 C 1.81397 * 103.00056 * 65.00099 * 4 2 1 6 6 C 1.52996 * 109.47122 * 180.02562 * 5 4 2 7 7 N 1.46503 * 109.47270 * 180.02562 * 6 5 4 8 8 C 1.34770 * 120.00169 * 180.02562 * 7 6 5 9 9 O 1.21542 * 119.99927 * 359.97438 * 8 7 6 10 10 C 1.47896 * 120.00001 * 179.97438 * 8 7 6 11 11 C 1.39913 * 120.02306 * 359.72311 * 10 8 7 12 12 C 1.38328 * 120.36017 * 179.74269 * 11 10 8 13 13 C 1.37756 * 120.40789 * 0.55789 * 12 11 10 14 14 C 1.40751 * 120.03951 * 359.69517 * 13 12 11 15 15 C 1.41433 * 120.18010 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00597 * 150.17615 * 15 14 13 17 17 C 1.39942 * 119.99928 * 330.17939 * 15 14 13 18 18 N 1.30828 * 120.00171 * 161.73111 * 17 15 14 19 19 Si 1.86800 * 119.99948 * 341.73117 * 17 15 14 20 20 H 1.48495 * 109.47170 * 95.41176 * 19 17 15 21 21 H 1.48502 * 109.47218 * 215.41327 * 19 17 15 22 22 H 1.48503 * 109.47144 * 335.41068 * 19 17 15 23 23 C 1.38991 * 120.02555 * 179.97438 * 10 8 7 24 24 H 1.09004 * 109.47118 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47361 * 299.99829 * 1 2 3 26 26 H 1.08997 * 109.47513 * 60.00355 * 1 2 3 27 27 H 1.08991 * 109.47144 * 239.99898 * 2 1 3 28 28 H 1.08993 * 109.47131 * 180.02562 * 3 2 1 29 29 H 1.09011 * 109.46876 * 300.00070 * 3 2 1 30 30 H 1.08999 * 109.47433 * 59.99370 * 3 2 1 31 31 H 1.09000 * 109.46796 * 59.99890 * 5 4 2 32 32 H 1.09000 * 109.47029 * 300.00359 * 5 4 2 33 33 H 1.08998 * 109.47036 * 299.99684 * 6 5 4 34 34 H 1.09000 * 109.47433 * 60.00209 * 6 5 4 35 35 H 0.97008 * 119.99724 * 359.97438 * 7 6 5 36 36 H 1.08001 * 119.82189 * 359.97438 * 11 10 8 37 37 H 1.07996 * 119.80235 * 180.27590 * 12 11 10 38 38 H 1.08001 * 119.98479 * 179.72554 * 13 12 11 39 39 H 0.96998 * 120.00196 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.19927 * 359.96314 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8550 1.4812 5 6 1.5665 -2.5592 1.2291 6 6 2.0041 -3.4231 2.4136 7 7 1.5457 -4.7996 2.2098 8 6 1.8176 -5.7439 3.1321 9 8 2.4434 -5.4537 4.1328 10 6 1.3544 -7.1333 2.9266 11 6 0.6289 -7.4667 1.7776 12 6 0.1968 -8.7652 1.5758 13 6 0.4657 -9.7424 2.5087 14 6 1.1896 -9.4248 3.6732 15 6 1.4678 -10.4259 4.6327 16 1 2.3616 -10.3626 5.2358 17 6 0.5851 -11.4988 4.8007 18 7 0.9871 -12.5886 5.4025 19 14 -1.1672 -11.3746 4.1655 20 1 -1.2496 -11.9900 2.8166 21 1 -2.0815 -12.0892 5.0923 22 1 -1.5638 -9.9459 4.0829 23 6 1.6349 -8.1078 3.8772 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4425 -0.0005 29 1 1.6765 1.9564 -0.8901 30 1 1.6765 1.9564 0.8899 31 1 2.0002 -2.9547 0.3107 32 1 0.4793 -2.5721 1.1524 33 1 3.0912 -3.4103 2.4907 34 1 1.5700 -3.0275 3.3319 35 1 1.0459 -5.0311 1.4113 36 1 0.4082 -6.7069 1.0425 37 1 -0.3586 -9.0135 0.6835 38 1 0.1213 -10.7531 2.3463 39 1 0.3753 -13.3324 5.5185 40 1 2.1916 -7.8541 4.7673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287208442.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:01 Heat of formation + Delta-G solvation = -37.264012 kcal Electronic energy + Delta-G solvation = -19924.005789 eV Core-core repulsion = 16828.842237 eV Total energy + Delta-G solvation = -3095.163551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.48135 -37.38869 -35.22246 -35.11675 -33.72038 -31.39954 -30.23678 -29.72711 -27.67241 -25.31926 -24.06128 -22.59229 -21.82517 -20.69386 -20.11600 -17.99684 -16.69025 -16.39412 -16.16077 -15.68796 -15.50597 -15.16243 -14.72479 -14.49146 -14.08873 -13.77843 -13.65603 -13.55195 -12.79925 -12.76626 -12.71890 -12.36723 -12.15904 -11.95639 -11.85098 -11.69963 -11.58989 -11.52485 -11.07006 -10.80886 -10.57083 -10.14806 -10.03461 -9.75059 -9.46711 -9.17776 -8.92538 -7.99024 -7.89999 -7.78887 -7.02735 -4.57594 1.21234 1.88152 2.20118 2.48813 3.03445 3.15739 3.23926 3.57549 3.58784 3.91122 4.33366 4.40852 4.45719 4.51172 4.62206 4.80585 5.08556 5.13745 5.25535 5.28995 5.30275 5.37952 5.40134 5.63176 5.69215 5.71415 5.77653 5.86314 5.98626 6.36096 6.55921 6.63446 6.66747 6.94900 7.17962 7.37243 7.46497 7.71217 7.74833 7.96885 8.25954 8.50508 8.64029 8.69586 9.99307 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.038882 B = 0.002609 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.952537 B =10731.253246 C =11173.065119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.063 4.063 3 C -0.133 4.133 4 S -0.240 6.240 5 C -0.102 4.102 6 C 0.138 3.862 7 N -0.733 5.733 8 C 0.565 3.435 9 O -0.544 6.544 10 C -0.108 4.108 11 C -0.218 4.218 12 C -0.083 4.083 13 C -0.222 4.222 14 C 0.081 3.919 15 C -0.441 4.441 16 H 0.094 0.906 17 C 0.083 3.917 18 N -0.802 5.802 19 Si 0.911 3.089 20 H -0.269 1.269 21 H -0.289 1.289 22 H -0.244 1.244 23 C -0.135 4.135 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.400 0.600 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.287 0.713 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.102 19.784 -12.332 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.192 4.192 3 C -0.191 4.191 4 S -0.014 6.014 5 C -0.251 4.251 6 C 0.014 3.986 7 N -0.388 5.388 8 C 0.355 3.645 9 O -0.422 6.422 10 C -0.111 4.111 11 C -0.238 4.238 12 C -0.101 4.101 13 C -0.241 4.241 14 C 0.078 3.922 15 C -0.469 4.469 16 H 0.112 0.888 17 C -0.137 4.137 18 N -0.426 5.426 19 Si 0.737 3.263 20 H -0.196 1.196 21 H -0.216 1.216 22 H -0.167 1.167 23 C -0.155 4.155 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.236 0.764 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.052 20.157 -10.610 22.871 hybrid contribution -1.715 -0.831 -1.748 2.586 sum -3.766 19.325 -12.358 23.246 Atomic orbital electron populations 1.22117 0.93177 1.02566 1.03009 1.23116 0.98871 0.99592 0.97592 1.21605 1.01910 0.92820 1.02808 1.86980 1.75551 1.06453 1.32377 1.23556 1.04310 0.94825 1.02416 1.20847 1.00505 0.80994 0.96300 1.45913 1.59438 1.08380 1.25104 1.18792 0.78351 0.85503 0.81877 1.90711 1.40549 1.82344 1.28600 1.19395 1.02893 0.91370 0.97417 1.20361 1.08392 0.96333 0.98683 1.20506 0.98699 0.93092 0.97812 1.21178 1.08636 0.98286 0.96044 1.17704 0.90625 0.91770 0.92069 1.19528 1.08044 1.02206 1.17154 0.88793 1.26181 1.01583 0.93232 0.92683 1.69690 1.37511 1.03065 1.32314 0.86304 0.80939 0.80935 0.78077 1.19552 1.21631 1.16680 1.21284 1.04240 0.91549 0.98441 0.92405 0.91208 0.91694 0.89462 0.91559 0.91079 0.91575 0.89396 0.89311 0.90726 0.90714 0.76401 0.88692 0.88285 0.87864 0.90283 0.86600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.10 37.16 0.34 -0.59 16 2 C -0.06 -0.44 3.38 -26.73 -0.09 -0.53 16 3 C -0.13 -0.78 9.20 37.16 0.34 -0.44 16 4 S -0.24 -2.33 21.15 -107.50 -2.27 -4.60 16 5 C -0.10 -0.95 5.75 37.16 0.21 -0.74 16 6 C 0.14 1.76 5.68 -4.04 -0.02 1.73 16 7 N -0.73 -10.67 5.51 -61.24 -0.34 -11.01 16 8 C 0.56 11.08 7.77 -12.31 -0.10 10.98 16 9 O -0.54 -12.40 16.33 5.33 0.09 -12.31 16 10 C -0.11 -2.28 5.87 -105.04 -0.62 -2.90 16 11 C -0.22 -4.13 9.55 -38.92 -0.37 -4.50 16 12 C -0.08 -1.66 10.01 -39.72 -0.40 -2.06 16 13 C -0.22 -5.13 7.17 -38.81 -0.28 -5.41 16 14 C 0.08 2.04 5.10 -106.87 -0.55 1.50 16 15 C -0.44 -11.83 9.57 -37.73 -0.36 -12.19 16 16 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 17 C 0.08 2.13 5.40 -17.34 -0.09 2.04 16 18 N -0.80 -21.05 13.93 55.55 0.77 -20.27 16 19 Si 0.91 20.23 24.52 -169.99 -4.17 16.06 16 20 H -0.27 -5.73 6.71 56.52 0.38 -5.35 16 21 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 22 H -0.24 -5.54 6.86 56.52 0.39 -5.15 16 23 C -0.13 -3.24 9.34 -38.44 -0.36 -3.60 16 24 H 0.06 0.37 6.92 -51.93 -0.36 0.01 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.09 0.74 7.14 -51.92 -0.37 0.37 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.40 4.81 6.49 -40.82 -0.26 4.54 16 36 H 0.10 1.42 6.38 -52.49 -0.33 1.09 16 37 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.10 2.36 4.72 -52.49 -0.25 2.12 16 39 H 0.29 6.78 8.30 -40.82 -0.34 6.44 16 40 H 0.12 2.85 7.64 -52.48 -0.40 2.45 16 LS Contribution 341.98 15.07 5.15 5.15 Total: -1.00 -29.14 341.98 -8.90 -38.04 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.80 Total: 5.64 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -2.34 Total: -16.70 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.44 Total: -31.28 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.31 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.17 Total: 16.06 kcal Atomic # 16 Polarization: -2.33 SS G_CDS: -2.27 Total: -4.60 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.14 -8.90 -38.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287208442.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.777 kcal (2) G-P(sol) polarization free energy of solvation -29.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds