Wall clock time and date at job start Tue Mar 31 2020 07:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46976 * 2 1 4 4 S 1.81401 * 109.47272 * 119.99706 * 2 1 3 5 5 C 1.81397 * 103.00056 * 65.00099 * 4 2 1 6 6 C 1.52996 * 109.47122 * 180.02562 * 5 4 2 7 7 N 1.46503 * 109.47270 * 180.02562 * 6 5 4 8 8 C 1.34770 * 120.00169 * 180.02562 * 7 6 5 9 9 O 1.21542 * 119.99927 * 359.97438 * 8 7 6 10 10 C 1.47896 * 120.00001 * 179.97438 * 8 7 6 11 11 C 1.39913 * 120.02306 * 359.72311 * 10 8 7 12 12 C 1.38328 * 120.36017 * 179.74269 * 11 10 8 13 13 C 1.37756 * 120.40789 * 0.55789 * 12 11 10 14 14 C 1.40751 * 120.03951 * 359.69517 * 13 12 11 15 15 C 1.41433 * 120.18010 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00597 * 150.17615 * 15 14 13 17 17 C 1.39942 * 119.99928 * 330.17939 * 15 14 13 18 18 N 1.30828 * 120.00171 * 161.73111 * 17 15 14 19 19 Si 1.86800 * 119.99948 * 341.73117 * 17 15 14 20 20 H 1.48495 * 109.47170 * 95.41176 * 19 17 15 21 21 H 1.48502 * 109.47218 * 215.41327 * 19 17 15 22 22 H 1.48503 * 109.47144 * 335.41068 * 19 17 15 23 23 C 1.38991 * 120.02555 * 179.97438 * 10 8 7 24 24 H 1.09004 * 109.47118 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47361 * 299.99829 * 1 2 3 26 26 H 1.08997 * 109.47513 * 60.00355 * 1 2 3 27 27 H 1.08991 * 109.47144 * 239.99898 * 2 1 3 28 28 H 1.08993 * 109.47131 * 180.02562 * 3 2 1 29 29 H 1.09011 * 109.46876 * 300.00070 * 3 2 1 30 30 H 1.08999 * 109.47433 * 59.99370 * 3 2 1 31 31 H 1.09000 * 109.46796 * 59.99890 * 5 4 2 32 32 H 1.09000 * 109.47029 * 300.00359 * 5 4 2 33 33 H 1.08998 * 109.47036 * 299.99684 * 6 5 4 34 34 H 1.09000 * 109.47433 * 60.00209 * 6 5 4 35 35 H 0.97008 * 119.99724 * 359.97438 * 7 6 5 36 36 H 1.08001 * 119.82189 * 359.97438 * 11 10 8 37 37 H 1.07996 * 119.80235 * 180.27590 * 12 11 10 38 38 H 1.08001 * 119.98479 * 179.72554 * 13 12 11 39 39 H 0.96998 * 120.00196 * 180.02562 * 18 17 15 40 40 H 1.08004 * 120.19927 * 359.96314 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 2.1347 -0.8550 1.4812 5 6 1.5665 -2.5592 1.2291 6 6 2.0041 -3.4231 2.4136 7 7 1.5457 -4.7996 2.2098 8 6 1.8176 -5.7439 3.1321 9 8 2.4434 -5.4537 4.1328 10 6 1.3544 -7.1333 2.9266 11 6 0.6289 -7.4667 1.7776 12 6 0.1968 -8.7652 1.5758 13 6 0.4657 -9.7424 2.5087 14 6 1.1896 -9.4248 3.6732 15 6 1.4678 -10.4259 4.6327 16 1 2.3616 -10.3626 5.2358 17 6 0.5851 -11.4988 4.8007 18 7 0.9871 -12.5886 5.4025 19 14 -1.1672 -11.3746 4.1655 20 1 -1.2496 -11.9900 2.8166 21 1 -2.0815 -12.0892 5.0923 22 1 -1.5638 -9.9459 4.0829 23 6 1.6349 -8.1078 3.8772 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.1299 1.4425 -0.0005 29 1 1.6765 1.9564 -0.8901 30 1 1.6765 1.9564 0.8899 31 1 2.0002 -2.9547 0.3107 32 1 0.4793 -2.5721 1.1524 33 1 3.0912 -3.4103 2.4907 34 1 1.5700 -3.0275 3.3319 35 1 1.0459 -5.0311 1.4113 36 1 0.4082 -6.7069 1.0425 37 1 -0.3586 -9.0135 0.6835 38 1 0.1213 -10.7531 2.3463 39 1 0.3753 -13.3324 5.5185 40 1 2.1916 -7.8541 4.7673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287208442.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:01 Heat of formation + Delta-G solvation = -54.947749 kcal Electronic energy + Delta-G solvation = -19924.772613 eV Core-core repulsion = 16828.842237 eV Total energy + Delta-G solvation = -3095.930376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.05251 -39.10510 -36.49888 -35.65121 -35.57352 -32.94805 -31.91048 -31.13303 -28.15692 -27.14002 -25.37432 -23.81319 -22.58271 -22.36215 -21.70861 -19.68498 -18.13972 -17.56465 -17.27983 -17.10478 -16.76379 -16.47460 -15.89411 -15.48112 -15.44752 -15.31356 -14.81492 -14.56976 -14.44825 -14.26720 -13.83862 -13.44694 -13.22832 -13.14406 -12.94860 -12.84392 -12.68191 -12.41887 -12.31367 -12.19414 -12.09638 -11.76606 -11.57329 -11.21793 -10.88536 -10.76268 -10.27897 -9.63699 -9.57085 -8.91983 -8.72779 -6.56107 0.15955 0.50488 0.73715 1.25201 1.41767 1.48536 1.55157 1.92395 2.12218 2.27795 2.64193 3.44468 3.60158 3.82794 3.87927 3.89235 3.94600 4.25964 4.32214 4.33956 4.40720 4.56956 4.64598 4.73058 4.76032 4.81927 4.86338 4.88141 4.91471 4.96790 5.14836 5.25146 5.26943 5.29331 5.41428 5.63870 5.70419 5.83983 6.09743 6.29168 6.51950 6.65243 6.73232 7.17891 8.17071 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.038882 B = 0.002609 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.952537 B =10731.253246 C =11173.065119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.050 4.050 3 C -0.133 4.133 4 S -0.292 6.292 5 C -0.085 4.085 6 C 0.139 3.861 7 N -0.706 5.706 8 C 0.562 3.438 9 O -0.586 6.586 10 C -0.112 4.112 11 C -0.181 4.181 12 C -0.082 4.082 13 C -0.224 4.224 14 C 0.064 3.936 15 C -0.489 4.489 16 H 0.048 0.952 17 C 0.043 3.957 18 N -0.849 5.849 19 Si 0.969 3.031 20 H -0.245 1.245 21 H -0.278 1.278 22 H -0.251 1.251 23 C -0.168 4.168 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.418 0.582 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.107 0.893 39 H 0.295 0.705 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.830 21.996 -16.889 28.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C -0.191 4.191 4 S -0.066 6.066 5 C -0.234 4.234 6 C 0.015 3.985 7 N -0.361 5.361 8 C 0.352 3.648 9 O -0.467 6.467 10 C -0.116 4.116 11 C -0.200 4.200 12 C -0.100 4.100 13 C -0.244 4.244 14 C 0.062 3.938 15 C -0.518 4.518 16 H 0.067 0.933 17 C -0.171 4.171 18 N -0.475 5.475 19 Si 0.791 3.209 20 H -0.170 1.170 21 H -0.205 1.205 22 H -0.174 1.174 23 C -0.188 4.188 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.257 0.743 36 H 0.170 0.830 37 H 0.167 0.833 38 H 0.125 0.875 39 H 0.106 0.894 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.787 22.392 -15.218 27.494 hybrid contribution -0.794 -1.219 -0.495 1.537 sum -5.581 21.173 -15.713 26.951 Atomic orbital electron populations 1.22111 0.92333 1.02805 1.03476 1.23206 0.99404 0.99509 0.95766 1.21631 1.01635 0.92393 1.03472 1.87247 1.76390 1.07655 1.35277 1.23397 1.05339 0.93525 1.01105 1.20886 0.99721 0.80184 0.97708 1.45645 1.57982 1.08248 1.24197 1.18634 0.78225 0.85760 0.82229 1.90703 1.42519 1.82862 1.30623 1.19656 1.02658 0.91690 0.97557 1.21019 1.03967 0.97404 0.97617 1.21061 0.98023 0.92451 0.98417 1.21402 1.07689 0.99572 0.95707 1.17783 0.91778 0.91540 0.92715 1.19459 1.08220 1.04913 1.19242 0.93334 1.26942 1.04948 0.92411 0.92826 1.69726 1.39098 1.04000 1.34668 0.85443 0.76061 0.80503 0.78899 1.16976 1.20476 1.17428 1.21204 1.05937 0.92509 0.99183 0.92265 0.91955 0.89993 0.88422 0.92084 0.89025 0.92202 0.87585 0.87557 0.91999 0.91982 0.74343 0.83002 0.83279 0.87543 0.89428 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.10 71.98 0.66 -0.67 16 2 C -0.05 -0.55 3.38 30.59 0.10 -0.45 16 3 C -0.13 -1.25 9.20 71.98 0.66 -0.59 16 4 S -0.29 -5.12 21.15 -56.49 -1.19 -6.32 16 5 C -0.09 -1.29 5.75 71.98 0.41 -0.88 16 6 C 0.14 3.25 5.68 86.38 0.49 3.74 16 7 N -0.71 -18.18 5.51 -465.94 -2.57 -20.75 16 8 C 0.56 21.33 7.77 86.80 0.67 22.01 16 9 O -0.59 -27.29 16.33 -3.85 -0.06 -27.35 16 10 C -0.11 -4.58 5.87 -20.13 -0.12 -4.70 16 11 C -0.18 -5.89 9.55 22.70 0.22 -5.67 16 12 C -0.08 -2.85 10.01 22.18 0.22 -2.63 16 13 C -0.22 -9.91 7.17 22.77 0.16 -9.75 16 14 C 0.06 3.33 5.10 -21.32 -0.11 3.22 16 15 C -0.49 -28.27 9.57 23.47 0.22 -28.04 16 16 H 0.05 3.09 8.06 -2.91 -0.02 3.06 16 17 C 0.04 2.33 5.40 85.26 0.46 2.79 16 18 N -0.85 -47.04 13.93 21.83 0.30 -46.73 16 19 Si 0.97 41.52 24.52 68.60 1.68 43.20 16 20 H -0.25 -9.47 6.71 99.48 0.67 -8.80 16 21 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.25 -10.88 6.86 99.48 0.68 -10.20 16 23 C -0.17 -8.39 9.34 23.01 0.21 -8.17 16 24 H 0.06 0.52 6.92 -2.39 -0.02 0.50 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.10 0.90 8.14 -2.40 -0.02 0.88 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.11 1.28 7.14 -2.39 -0.02 1.26 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.42 7.63 6.49 -92.70 -0.60 7.02 16 36 H 0.15 3.27 6.38 -2.91 -0.02 3.25 16 37 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 38 H 0.11 4.62 4.72 -2.91 -0.01 4.60 16 39 H 0.30 14.55 8.30 -92.71 -0.77 13.78 16 40 H 0.09 4.74 7.64 -2.91 -0.02 4.72 16 Total: -1.00 -69.89 341.98 2.81 -67.07 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.38 Total: 20.66 kcal Atomic # 6 Polarization: -34.06 SS G_CDS: 4.28 Total: -29.79 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: -2.26 Total: -67.48 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.06 Total: -27.35 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 1.68 Total: 43.20 kcal Atomic # 16 Polarization: -5.12 SS G_CDS: -1.19 Total: -6.32 kcal Total: -69.89 2.81 -67.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287208442.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.125 kcal (2) G-P(sol) polarization free energy of solvation -69.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds