Wall clock time and date at job start Tue Mar 31 2020 07:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46337 * 2 1 4 4 S 1.81392 * 109.47385 * 119.99987 * 2 1 3 5 5 C 1.76204 * 103.00054 * 171.74652 * 4 2 1 6 6 C 1.38789 * 120.10329 * 354.77423 * 5 4 2 7 7 C 1.38191 * 119.98934 * 180.02562 * 6 5 4 8 8 C 1.38300 * 120.20120 * 359.97438 * 7 6 5 9 9 C 1.38251 * 120.20680 * 0.02562 * 8 7 6 10 10 C 1.38648 * 120.01234 * 359.97438 * 9 8 7 11 11 N 1.40131 * 120.10060 * 179.97438 * 10 9 8 12 12 C 1.34776 * 120.00080 * 19.58781 * 11 10 9 13 13 O 1.21292 * 120.00286 * 5.67861 * 12 11 10 14 14 C 1.50707 * 120.00020 * 185.67244 * 12 11 10 15 15 C 1.53002 * 109.46987 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.46981 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00123 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99923 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00101 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99832 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47353 * 60.00050 * 20 18 16 22 22 H 1.48502 * 109.47204 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47005 * 299.99533 * 20 18 16 24 24 H 1.08998 * 109.47422 * 299.99279 * 1 2 3 25 25 H 1.08996 * 109.47618 * 60.00271 * 1 2 3 26 26 H 1.09005 * 109.46273 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46938 * 240.00910 * 2 1 3 28 28 H 1.08994 * 109.47425 * 304.68082 * 3 2 1 29 29 H 1.09002 * 109.47222 * 64.68953 * 3 2 1 30 30 H 1.09009 * 109.46612 * 184.68165 * 3 2 1 31 31 H 1.08005 * 120.00242 * 0.02562 * 6 5 4 32 32 H 1.08004 * 119.89881 * 180.02562 * 7 6 5 33 33 H 1.07999 * 119.89844 * 180.02562 * 8 7 6 34 34 H 1.08000 * 119.99067 * 179.72437 * 9 8 7 35 35 H 0.97010 * 120.00278 * 199.58948 * 11 10 9 36 36 H 1.08996 * 109.46925 * 300.00240 * 14 12 11 37 37 H 1.09001 * 109.46958 * 60.00420 * 14 12 11 38 38 H 1.08999 * 109.46982 * 300.00194 * 15 14 12 39 39 H 1.09001 * 109.47173 * 60.00253 * 15 14 12 40 40 H 0.97002 * 120.00260 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 2.1348 -0.8551 1.4810 5 6 3.8688 -0.9722 1.1909 6 6 4.4016 -0.5546 -0.0207 7 6 5.7619 -0.6480 -0.2459 8 6 6.5959 -1.1563 0.7332 9 6 6.0739 -1.5746 1.9431 10 6 4.7105 -1.4849 2.1784 11 7 4.1794 -1.9088 3.4039 12 6 4.9811 -2.0280 4.4807 13 8 6.1386 -1.6710 4.4175 14 6 4.4394 -2.6046 5.7634 15 6 5.5461 -2.6277 6.8196 16 6 5.0046 -3.2049 8.1020 17 1 3.9742 -3.5238 8.1580 18 6 5.8248 -3.3269 9.2035 19 7 7.0798 -2.9400 9.1349 20 14 5.1536 -4.0431 10.7929 21 1 4.6732 -5.4268 10.5484 22 1 6.2277 -4.0655 11.8182 23 1 4.0264 -3.2057 11.2760 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3632 -1.0278 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.6097 1.9800 -0.8450 29 1 1.7467 1.9316 0.9290 30 1 3.1267 1.4438 -0.0839 31 1 3.7532 -0.1568 -0.7874 32 1 6.1750 -0.3223 -1.1892 33 1 7.6583 -1.2267 0.5521 34 1 6.7278 -1.9751 2.7036 35 1 3.2346 -2.1166 3.4772 36 1 3.6123 -1.9893 6.1175 37 1 4.0861 -3.6202 5.5845 38 1 6.3734 -3.2428 6.4655 39 1 5.8990 -1.6121 6.9984 40 1 7.6570 -3.0262 9.9097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291284745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:42:54 Heat of formation + Delta-G solvation = -24.241500 kcal Electronic energy + Delta-G solvation = -20444.460335 eV Core-core repulsion = 17349.861482 eV Total energy + Delta-G solvation = -3094.598853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.31412 -38.27276 -35.39174 -34.47015 -33.53665 -31.26937 -31.04309 -29.36254 -27.59705 -25.78715 -23.38373 -22.98040 -22.09878 -21.12648 -19.71201 -17.99072 -17.12056 -16.86046 -16.24748 -15.82116 -15.24939 -15.09243 -14.64265 -14.43213 -14.30189 -13.94233 -13.57732 -13.31308 -13.11505 -12.66165 -12.52426 -12.32194 -12.19069 -11.89681 -11.74271 -11.69569 -11.21471 -11.08671 -10.92968 -10.64082 -10.42040 -10.20551 -10.00616 -9.74859 -9.66225 -9.19635 -9.05574 -8.34551 -8.22033 -7.34134 -5.97950 -4.02650 1.15839 1.31296 1.36928 2.21621 3.01810 3.30143 3.34204 3.39076 3.41281 3.81143 4.35588 4.43858 4.46228 4.72863 4.83146 4.99310 5.16846 5.18175 5.29361 5.34479 5.37162 5.37261 5.43325 5.50330 5.56334 5.71156 5.81426 5.88785 6.10879 6.13327 6.22846 6.28279 6.50099 6.61581 6.80992 7.06980 7.63767 7.71043 7.80685 8.03154 8.33427 8.52888 9.04807 9.61105 11.12942 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.022060 B = 0.003257 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.966329 B = 8595.573833 C = 9645.094723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.076 4.076 3 C -0.156 4.156 4 S -0.126 6.126 5 C -0.127 4.127 6 C -0.114 4.114 7 C -0.135 4.135 8 C -0.099 4.099 9 C -0.128 4.128 10 C 0.185 3.815 11 N -0.676 5.676 12 C 0.511 3.489 13 O -0.508 6.508 14 C -0.130 4.130 15 C 0.037 3.963 16 C -0.529 4.529 17 H 0.056 0.944 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.162 0.838 35 H 0.410 0.590 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.058 5.996 -22.487 25.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.205 4.205 3 C -0.215 4.215 4 S 0.116 5.884 5 C -0.242 4.242 6 C -0.138 4.138 7 C -0.156 4.156 8 C -0.119 4.119 9 C -0.150 4.150 10 C 0.083 3.917 11 N -0.320 5.320 12 C 0.301 3.699 13 O -0.382 6.382 14 C -0.169 4.169 15 C 0.000 4.000 16 C -0.567 4.567 17 H 0.074 0.926 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.111 0.889 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.179 0.821 35 H 0.246 0.754 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.820 5.856 -21.382 24.669 hybrid contribution -0.015 -0.025 -0.231 0.233 sum -10.835 5.831 -21.614 24.871 Atomic orbital electron populations 1.21619 0.91354 1.03193 1.03072 1.23317 0.99921 0.99137 0.98081 1.22232 1.02121 0.93917 1.03186 1.85241 0.99504 1.73938 1.29723 1.21277 0.96499 1.08260 0.98211 1.20940 0.96025 1.01575 0.95238 1.20952 0.92979 1.02082 0.99540 1.21154 0.99922 0.98007 0.92859 1.21780 0.93819 1.00882 0.98535 1.17478 0.92536 0.96615 0.85060 1.44058 1.13261 1.66621 1.08071 1.21886 0.86095 0.76862 0.85020 1.90580 1.17841 1.46537 1.83270 1.21944 1.02923 1.00656 0.91424 1.18916 0.91953 0.98473 0.90667 1.21158 0.97093 1.42093 0.96386 0.92562 1.25016 0.94847 0.95536 0.98910 1.69981 1.05371 1.47038 1.30404 0.86637 0.78514 0.79634 0.83063 1.20216 1.21274 1.20212 0.91445 0.90839 0.91457 0.88950 0.91599 0.91123 0.91502 0.85664 0.86056 0.85591 0.82065 0.75390 0.89721 0.89632 0.95679 0.95659 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 9.20 37.16 0.34 -0.50 16 2 C -0.08 -0.60 2.60 -26.73 -0.07 -0.67 16 3 C -0.16 -1.17 8.76 37.16 0.33 -0.85 16 4 S -0.13 -1.40 19.96 -107.50 -2.15 -3.55 16 5 C -0.13 -1.68 6.06 -38.90 -0.24 -1.92 16 6 C -0.11 -1.29 8.03 -39.39 -0.32 -1.61 16 7 C -0.13 -1.50 10.04 -39.58 -0.40 -1.90 16 8 C -0.10 -1.27 10.04 -39.55 -0.40 -1.67 16 9 C -0.13 -2.05 8.78 -39.42 -0.35 -2.40 16 10 C 0.18 2.89 6.51 -83.44 -0.54 2.35 16 11 N -0.68 -10.75 5.24 -9.71 -0.05 -10.80 16 12 C 0.51 9.91 7.68 -10.98 -0.08 9.82 16 13 O -0.51 -11.52 12.89 5.55 0.07 -11.45 16 14 C -0.13 -2.61 5.64 -27.88 -0.16 -2.77 16 15 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 16 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 20 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.67 7.00 -51.93 -0.36 0.31 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.56 5.74 -51.92 -0.30 0.26 16 31 H 0.13 1.12 4.75 -52.48 -0.25 0.87 16 32 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.16 2.95 5.43 -52.49 -0.28 2.66 16 35 H 0.41 5.57 7.51 -40.82 -0.31 5.26 16 36 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 39 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 340.19 15.07 5.13 5.13 Total: -1.00 -32.68 340.19 -9.38 -42.06 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.69 Total: 3.38 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -2.41 Total: -14.83 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.69 Total: -37.32 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.07 Total: -11.45 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.15 Total: -3.55 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.68 -9.38 -42.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291284745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.815 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds