Wall clock time and date at job start Tue Mar 31 2020 07:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.69054 * 2 1 4 4 C 1.53533 * 109.58426 * 120.33990 * 2 1 3 5 5 N 1.47303 * 107.57489 * 178.02305 * 4 2 1 6 6 C 1.34773 * 121.16516 * 138.03948 * 5 4 2 7 7 O 1.21297 * 120.00003 * 175.79565 * 6 5 4 8 8 C 1.50700 * 119.99981 * 355.80130 * 6 5 4 9 9 C 1.53000 * 109.47191 * 184.98283 * 8 6 5 10 10 C 1.50701 * 109.47297 * 179.97438 * 9 8 6 11 11 H 1.07995 * 119.99961 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99809 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00546 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99677 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47201 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47054 * 119.99972 * 14 12 10 17 17 H 1.48500 * 109.47283 * 240.00163 * 14 12 10 18 18 C 1.40673 * 117.67374 * 318.06521 * 5 4 2 19 19 C 1.38562 * 120.06492 * 193.56990 * 18 5 4 20 20 C 1.38253 * 119.90941 * 180.17054 * 19 18 5 21 21 C 1.38480 * 120.02995 * 0.04044 * 20 19 18 22 22 F 1.35103 * 119.87401 * 179.67684 * 21 20 19 23 23 C 1.38386 * 120.24474 * 359.94994 * 21 20 19 24 24 C 1.38702 * 120.03643 * 359.97438 * 23 21 20 25 25 O 1.35899 * 119.64614 * 180.20564 * 24 23 21 26 26 H 1.09000 * 109.46923 * 299.65557 * 1 2 3 27 27 H 1.09000 * 109.47126 * 59.65929 * 1 2 3 28 28 H 1.08999 * 109.46829 * 179.66054 * 1 2 3 29 29 H 1.08998 * 109.84093 * 58.50515 * 4 2 1 30 30 H 1.09000 * 109.84154 * 297.54154 * 4 2 1 31 31 H 1.09000 * 109.46927 * 304.97799 * 8 6 5 32 32 H 1.08993 * 109.47525 * 64.98414 * 8 6 5 33 33 H 1.09004 * 109.47488 * 300.00185 * 9 8 6 34 34 H 1.09007 * 109.47291 * 59.99431 * 9 8 6 35 35 H 0.97004 * 120.00579 * 180.02562 * 13 12 10 36 36 H 1.07997 * 120.04154 * 0.19268 * 19 18 5 37 37 H 1.08000 * 119.98405 * 180.02562 * 20 19 18 38 38 H 1.08005 * 119.98243 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8972 1.0263 0.0000 4 6 2.0446 -0.7307 1.2484 5 7 3.5159 -0.7465 1.1796 6 6 4.2679 -0.5096 2.2727 7 8 5.4756 -0.6029 2.2099 8 6 3.6081 -0.1291 3.5731 9 6 4.6815 0.2029 4.6116 10 6 4.0218 0.5841 5.9118 11 1 2.9447 0.5887 5.9898 12 6 4.7934 0.9259 7.0020 13 7 6.1051 0.9199 6.9073 14 14 3.9756 1.3977 8.6139 15 1 2.5004 1.3255 8.4603 16 1 4.4081 0.4603 9.6814 17 1 4.3682 2.7819 8.9817 18 6 4.1088 -1.0170 -0.0671 19 6 5.4583 -1.3221 -0.1424 20 6 6.0384 -1.5840 -1.3697 21 6 5.2717 -1.5405 -2.5221 22 9 5.8433 -1.7905 -3.7204 23 6 3.9236 -1.2364 -2.4512 24 6 3.3346 -0.9742 -1.2232 25 8 2.0091 -0.6805 -1.1624 26 1 -0.3633 0.5085 0.8931 27 1 -0.3633 0.5191 -0.8869 28 1 -0.3633 -1.0277 -0.0061 29 1 1.6640 -1.7519 1.2626 30 1 1.7219 -0.2024 2.1456 31 1 2.9723 0.7423 3.4165 32 1 3.0021 -0.9616 3.9304 33 1 5.3175 -0.6684 4.7682 34 1 5.2877 1.0355 4.2543 35 1 6.6480 1.1600 7.6745 36 1 6.0560 -1.3557 0.7565 37 1 7.0901 -1.8223 -1.4297 38 1 3.3297 -1.2033 -3.3527 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291440399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:41 Heat of formation + Delta-G solvation = -86.531775 kcal Electronic energy + Delta-G solvation = -23235.459418 eV Core-core repulsion = 19571.946279 eV Total energy + Delta-G solvation = -3663.513138 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.90085 -41.42447 -39.09554 -37.59915 -35.42733 -33.68464 -32.72603 -31.45061 -30.34931 -28.90637 -26.81829 -25.78870 -23.67603 -23.20442 -21.86580 -20.80074 -19.20044 -18.67820 -17.52461 -17.25223 -16.53802 -16.29383 -15.80299 -15.68524 -15.45094 -14.99938 -14.77298 -14.53541 -14.04517 -13.63294 -13.60353 -13.46502 -12.99671 -12.85730 -12.55041 -12.31121 -12.26762 -12.05989 -11.70010 -11.40350 -11.22137 -11.03252 -10.91382 -10.66485 -10.13604 -10.06312 -9.73883 -9.24928 -9.09221 -8.67613 -8.42636 -7.78305 -6.05851 -4.11122 1.04517 1.18126 2.59498 2.80546 2.90450 3.26498 3.34135 3.36504 3.59929 4.15595 4.32373 4.38568 4.49483 4.59986 4.64718 4.87519 4.96429 5.04004 5.14584 5.28646 5.29699 5.30760 5.37080 5.52628 5.59107 5.77169 5.88667 5.97470 5.98077 6.11683 6.32830 6.44041 6.64695 6.77431 7.18453 7.30915 7.61924 7.69782 7.93782 8.21430 8.36366 8.96312 9.53347 11.05003 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021145 B = 0.003785 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.882329 B = 7394.974717 C = 8632.780926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.081 0.919 4 C 0.069 3.931 5 N -0.566 5.566 6 C 0.517 3.483 7 O -0.504 6.504 8 C -0.127 4.127 9 C 0.036 3.964 10 C -0.530 4.530 11 H 0.057 0.943 12 C 0.060 3.940 13 N -0.888 5.888 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.080 3.920 19 C -0.095 4.095 20 C -0.160 4.160 21 C 0.101 3.899 22 F -0.140 7.140 23 C -0.166 4.166 24 C 0.117 3.883 25 O -0.308 6.308 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.027 0.973 34 H 0.024 0.976 35 H 0.262 0.738 36 H 0.185 0.815 37 H 0.139 0.861 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.069 -3.619 -16.769 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 H 0.099 0.901 4 C -0.053 4.053 5 N -0.292 5.292 6 C 0.309 3.691 7 O -0.378 6.378 8 C -0.166 4.166 9 C -0.002 4.002 10 C -0.568 4.568 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.526 5.526 14 Si 0.721 3.279 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.015 4.015 19 C -0.115 4.115 20 C -0.179 4.179 21 C 0.081 3.919 22 F -0.119 7.119 23 C -0.186 4.186 24 C 0.069 3.931 25 O -0.222 6.222 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.134 0.866 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.046 0.954 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.201 0.799 37 H 0.157 0.843 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.399 -3.654 -16.747 19.549 hybrid contribution -0.289 0.289 0.772 0.873 sum -9.688 -3.366 -15.975 18.984 Atomic orbital electron populations 1.21771 0.90694 1.03879 1.03748 1.22877 0.96329 0.95637 0.83545 0.90073 1.22796 0.79094 1.02946 1.00496 1.46171 1.07078 1.68750 1.07200 1.21917 0.87381 0.74792 0.84987 1.90439 1.14628 1.49291 1.83487 1.21968 1.02047 1.01760 0.90843 1.18951 0.92271 0.98067 0.90862 1.21187 0.92966 1.46732 0.95894 0.92474 1.25015 0.94796 0.95472 0.98979 1.69993 1.03944 1.47975 1.30692 0.86525 0.79531 0.78185 0.83661 1.19721 1.20946 1.20956 1.18193 0.93849 1.04768 0.84656 1.22103 0.93354 0.95840 1.00206 1.21135 1.00985 1.04921 0.90869 1.17271 0.90843 1.02980 0.80817 1.91484 1.84783 1.91942 1.43652 1.20110 0.93403 1.08426 0.96673 1.18100 0.83346 1.00126 0.91535 1.86008 1.20099 1.73627 1.42486 0.89580 0.90883 0.91065 0.89378 0.86610 0.89855 0.89496 0.95445 0.95748 0.92871 0.79858 0.84286 0.83912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.58 37.16 0.36 -0.59 16 2 C 0.07 0.72 3.58 -26.46 -0.09 0.62 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.07 0.75 5.81 -3.33 -0.02 0.73 16 5 N -0.57 -8.52 3.02 -112.31 -0.34 -8.86 16 6 C 0.52 9.47 7.64 -10.99 -0.08 9.39 16 7 O -0.50 -10.86 12.69 5.54 0.07 -10.79 16 8 C -0.13 -2.36 4.13 -27.88 -0.12 -2.47 16 9 C 0.04 0.91 4.28 -27.88 -0.12 0.79 16 10 C -0.53 -14.27 9.11 -34.44 -0.31 -14.59 16 11 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 14 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 C 0.08 1.23 6.34 -83.32 -0.53 0.70 16 19 C -0.10 -1.49 9.03 -39.46 -0.36 -1.85 16 20 C -0.16 -2.16 10.02 -39.49 -0.40 -2.56 16 21 C 0.10 1.33 7.29 -39.44 -0.29 1.04 16 22 F -0.14 -1.81 17.26 2.25 0.04 -1.77 16 23 C -0.17 -2.11 9.95 -39.36 -0.39 -2.50 16 24 C 0.12 1.60 6.51 -39.05 -0.25 1.34 16 25 O -0.31 -3.75 9.97 -19.42 -0.19 -3.95 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.12 1.07 6.20 -51.93 -0.32 0.75 16 31 H 0.08 1.37 7.47 -51.93 -0.39 0.99 16 32 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.03 0.76 8.05 -51.93 -0.42 0.34 16 34 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.18 3.25 4.91 -53.58 -0.26 2.98 16 37 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 321.59 15.07 4.85 4.85 Total: -1.00 -32.01 321.59 -7.30 -39.31 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -4.74 Total: -0.58 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -2.70 Total: -8.36 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.40 Total: -34.58 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.12 Total: -14.74 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.01 -7.30 -39.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291440399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.221 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds