Wall clock time and date at job start Tue Mar 31 2020 07:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.69054 * 2 1 4 4 C 1.53533 * 109.58426 * 120.33990 * 2 1 3 5 5 N 1.47303 * 107.57489 * 178.02305 * 4 2 1 6 6 C 1.34773 * 121.16516 * 138.03948 * 5 4 2 7 7 O 1.21297 * 120.00003 * 175.79565 * 6 5 4 8 8 C 1.50700 * 119.99981 * 355.80130 * 6 5 4 9 9 C 1.53000 * 109.47191 * 184.98283 * 8 6 5 10 10 C 1.50701 * 109.47297 * 179.97438 * 9 8 6 11 11 H 1.07995 * 119.99961 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99809 * 179.97438 * 10 9 8 13 13 N 1.31509 * 120.00546 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99677 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47201 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.47054 * 119.99972 * 14 12 10 17 17 H 1.48500 * 109.47283 * 240.00163 * 14 12 10 18 18 C 1.40673 * 117.67374 * 318.06521 * 5 4 2 19 19 C 1.38562 * 120.06492 * 193.56990 * 18 5 4 20 20 C 1.38253 * 119.90941 * 180.17054 * 19 18 5 21 21 C 1.38480 * 120.02995 * 0.04044 * 20 19 18 22 22 F 1.35103 * 119.87401 * 179.67684 * 21 20 19 23 23 C 1.38386 * 120.24474 * 359.94994 * 21 20 19 24 24 C 1.38702 * 120.03643 * 359.97438 * 23 21 20 25 25 O 1.35899 * 119.64614 * 180.20564 * 24 23 21 26 26 H 1.09000 * 109.46923 * 299.65557 * 1 2 3 27 27 H 1.09000 * 109.47126 * 59.65929 * 1 2 3 28 28 H 1.08999 * 109.46829 * 179.66054 * 1 2 3 29 29 H 1.08998 * 109.84093 * 58.50515 * 4 2 1 30 30 H 1.09000 * 109.84154 * 297.54154 * 4 2 1 31 31 H 1.09000 * 109.46927 * 304.97799 * 8 6 5 32 32 H 1.08993 * 109.47525 * 64.98414 * 8 6 5 33 33 H 1.09004 * 109.47488 * 300.00185 * 9 8 6 34 34 H 1.09007 * 109.47291 * 59.99431 * 9 8 6 35 35 H 0.97004 * 120.00579 * 180.02562 * 13 12 10 36 36 H 1.07997 * 120.04154 * 0.19268 * 19 18 5 37 37 H 1.08000 * 119.98405 * 180.02562 * 20 19 18 38 38 H 1.08005 * 119.98243 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8972 1.0263 0.0000 4 6 2.0446 -0.7307 1.2484 5 7 3.5159 -0.7465 1.1796 6 6 4.2679 -0.5096 2.2727 7 8 5.4756 -0.6029 2.2099 8 6 3.6081 -0.1291 3.5731 9 6 4.6815 0.2029 4.6116 10 6 4.0218 0.5841 5.9118 11 1 2.9447 0.5887 5.9898 12 6 4.7934 0.9259 7.0020 13 7 6.1051 0.9199 6.9073 14 14 3.9756 1.3977 8.6139 15 1 2.5004 1.3255 8.4603 16 1 4.4081 0.4603 9.6814 17 1 4.3682 2.7819 8.9817 18 6 4.1088 -1.0170 -0.0671 19 6 5.4583 -1.3221 -0.1424 20 6 6.0384 -1.5840 -1.3697 21 6 5.2717 -1.5405 -2.5221 22 9 5.8433 -1.7905 -3.7204 23 6 3.9236 -1.2364 -2.4512 24 6 3.3346 -0.9742 -1.2232 25 8 2.0091 -0.6805 -1.1624 26 1 -0.3633 0.5085 0.8931 27 1 -0.3633 0.5191 -0.8869 28 1 -0.3633 -1.0277 -0.0061 29 1 1.6640 -1.7519 1.2626 30 1 1.7219 -0.2024 2.1456 31 1 2.9723 0.7423 3.4165 32 1 3.0021 -0.9616 3.9304 33 1 5.3175 -0.6684 4.7682 34 1 5.2877 1.0355 4.2543 35 1 6.6480 1.1600 7.6745 36 1 6.0560 -1.3557 0.7565 37 1 7.0901 -1.8223 -1.4297 38 1 3.3297 -1.2033 -3.3527 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291440399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:40 Heat of formation + Delta-G solvation = -105.654303 kcal Electronic energy + Delta-G solvation = -23236.288633 eV Core-core repulsion = 19571.946279 eV Total energy + Delta-G solvation = -3664.342353 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.95267 -42.53246 -40.37306 -38.62169 -36.63010 -35.64869 -33.55871 -33.22553 -31.51430 -30.07837 -27.94615 -27.34997 -24.93988 -24.20374 -23.43064 -21.92698 -20.50503 -19.69381 -18.95048 -18.45127 -18.04421 -17.43009 -17.07062 -16.84151 -16.65909 -16.47424 -16.02641 -15.72395 -15.31757 -14.93177 -14.82592 -14.55736 -14.20240 -14.02812 -13.93671 -13.42242 -13.28883 -13.10507 -12.96786 -12.85064 -12.59633 -12.44781 -12.33573 -11.98440 -11.80734 -11.61523 -11.28135 -11.16431 -10.57716 -10.52523 -9.74292 -8.91585 -8.18206 -6.31900 -0.08238 0.09973 1.41858 1.44197 1.44896 1.49655 1.57959 1.95901 2.42910 2.48904 3.16039 3.26993 3.27941 3.42979 3.65968 3.87771 3.91266 3.94510 4.06384 4.15533 4.29828 4.38638 4.46234 4.54726 4.57176 4.83947 4.90720 4.91915 4.97903 5.05080 5.17153 5.29668 5.34438 5.49606 5.59137 5.69111 5.83440 6.03141 6.15712 6.20473 6.85260 6.96517 7.38786 8.94535 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021145 B = 0.003785 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.882329 B = 7394.974717 C = 8632.780926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.070 3.930 3 H 0.078 0.922 4 C 0.060 3.940 5 N -0.560 5.560 6 C 0.514 3.486 7 O -0.551 6.551 8 C -0.112 4.112 9 C 0.041 3.959 10 C -0.539 4.539 11 H 0.080 0.920 12 C -0.006 4.006 13 N -0.937 5.937 14 Si 0.971 3.029 15 H -0.250 1.250 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.059 3.941 19 C -0.115 4.115 20 C -0.161 4.161 21 C 0.104 3.896 22 F -0.136 7.136 23 C -0.160 4.160 24 C 0.122 3.878 25 O -0.308 6.308 26 H 0.107 0.893 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.136 0.864 31 H 0.113 0.887 32 H 0.113 0.887 33 H -0.014 1.014 34 H -0.016 1.016 35 H 0.262 0.738 36 H 0.159 0.841 37 H 0.153 0.847 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.577 -3.443 -17.380 22.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.014 3.986 3 H 0.096 0.904 4 C -0.061 4.061 5 N -0.285 5.285 6 C 0.307 3.693 7 O -0.429 6.429 8 C -0.151 4.151 9 C 0.003 3.997 10 C -0.577 4.577 11 H 0.098 0.902 12 C -0.203 4.203 13 N -0.577 5.577 14 Si 0.795 3.205 15 H -0.173 1.173 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.036 4.036 19 C -0.134 4.134 20 C -0.180 4.180 21 C 0.084 3.916 22 F -0.115 7.115 23 C -0.180 4.180 24 C 0.074 3.926 25 O -0.222 6.222 26 H 0.125 0.875 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.154 0.846 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.004 0.996 34 H 0.002 0.998 35 H 0.071 0.929 36 H 0.176 0.824 37 H 0.170 0.830 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -12.974 -3.486 -17.397 21.980 hybrid contribution 0.808 0.214 0.855 1.195 sum -12.167 -3.272 -16.542 20.794 Atomic orbital electron populations 1.21815 0.87712 1.04747 1.05106 1.23159 0.98388 0.94948 0.82144 0.90392 1.23216 0.76286 1.04507 1.02057 1.46075 1.08697 1.67447 1.06258 1.21789 0.86913 0.74761 0.85850 1.90456 1.16590 1.51470 1.84362 1.21717 1.00147 1.03957 0.89327 1.18725 0.93265 0.94784 0.92888 1.21707 0.94122 1.45643 0.96262 0.90189 1.26097 0.95287 0.95474 1.03455 1.70173 1.06008 1.49589 1.31973 0.85308 0.79493 0.77453 0.78204 1.17298 1.20934 1.20869 1.18352 0.94031 1.05916 0.85290 1.21899 0.93898 0.97556 1.00094 1.21223 1.01809 1.04553 0.90432 1.17276 0.91111 1.02553 0.80635 1.91496 1.84810 1.91861 1.43309 1.20369 0.93299 1.07076 0.97251 1.18141 0.83930 0.99486 0.91054 1.86030 1.18900 1.73643 1.43669 0.87453 0.90301 0.90426 0.87831 0.84609 0.86910 0.86913 0.99556 0.99767 0.92918 0.82433 0.82961 0.81477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.58 71.98 0.69 -0.57 16 2 C 0.07 1.18 3.58 30.77 0.11 1.29 16 3 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 4 C 0.06 1.14 5.81 86.41 0.50 1.64 16 5 N -0.56 -16.52 3.02 -627.63 -1.89 -18.41 16 6 C 0.51 19.25 7.64 87.66 0.67 19.92 16 7 O -0.55 -25.40 12.69 -3.08 -0.04 -25.44 16 8 C -0.11 -4.11 4.13 29.85 0.12 -3.99 16 9 C 0.04 2.16 4.28 29.85 0.13 2.28 16 10 C -0.54 -29.04 9.11 25.60 0.23 -28.81 16 11 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 12 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 13 N -0.94 -57.85 13.29 21.45 0.28 -57.56 16 14 Si 0.97 42.64 29.54 68.60 2.03 44.66 16 15 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 16 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 C 0.06 1.79 6.34 38.03 0.24 2.03 16 19 C -0.11 -3.73 9.03 22.35 0.20 -3.53 16 20 C -0.16 -4.39 10.02 22.33 0.22 -4.17 16 21 C 0.10 2.62 7.29 22.36 0.16 2.78 16 22 F -0.14 -3.29 17.26 44.97 0.78 -2.52 16 23 C -0.16 -3.75 9.95 22.42 0.22 -3.53 16 24 C 0.12 3.14 6.51 22.61 0.15 3.29 16 25 O -0.31 -6.71 9.97 -92.41 -0.92 -7.63 16 26 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 1.69 8.14 -2.39 -0.02 1.68 16 30 H 0.14 2.01 6.20 -2.39 -0.01 1.99 16 31 H 0.11 3.46 7.47 -2.39 -0.02 3.44 16 32 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 33 H -0.01 -0.84 8.05 -2.39 -0.02 -0.86 16 34 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 35 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 36 H 0.16 6.08 4.91 -20.20 -0.10 5.98 16 37 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 38 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -73.08 321.59 5.35 -67.73 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.99 Total: 10.36 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 4.12 Total: -11.20 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -1.61 Total: -75.97 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.96 Total: -33.07 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.78 Total: -2.52 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -73.08 5.35 -67.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291440399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.926 kcal (2) G-P(sol) polarization free energy of solvation -73.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds