Wall clock time and date at job start Tue Mar 31 2020 07:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.68735 * 2 1 4 4 C 1.53526 * 109.57772 * 239.66503 * 2 1 3 5 5 N 1.47304 * 107.56717 * 181.99160 * 4 2 1 6 6 C 1.34779 * 121.17021 * 222.01706 * 5 4 2 7 7 O 1.21297 * 120.00456 * 174.17029 * 6 5 4 8 8 C 1.50704 * 119.99853 * 354.17045 * 6 5 4 9 9 C 1.52997 * 109.47064 * 185.43440 * 8 6 5 10 10 C 1.50702 * 109.46818 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00289 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99598 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00386 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99605 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47159 * 89.99810 * 14 12 10 16 16 H 1.48500 * 109.47306 * 209.99739 * 14 12 10 17 17 H 1.48507 * 109.47511 * 329.99872 * 14 12 10 18 18 C 1.40666 * 117.66974 * 41.99402 * 5 4 2 19 19 C 1.38556 * 120.06887 * 166.37416 * 18 5 4 20 20 C 1.38253 * 119.91091 * 179.69912 * 19 18 5 21 21 C 1.38486 * 120.03237 * 359.96388 * 20 19 18 22 22 F 1.35098 * 119.87870 * 180.11914 * 21 20 19 23 23 C 1.38385 * 120.23989 * 0.12001 * 21 20 19 24 24 C 1.38701 * 120.03768 * 359.94913 * 23 21 20 25 25 O 1.35900 * 119.64498 * 179.85015 * 24 23 21 26 26 H 1.09006 * 109.47191 * 299.66943 * 1 2 3 27 27 H 1.08999 * 109.47404 * 59.67076 * 1 2 3 28 28 H 1.09005 * 109.47151 * 179.67447 * 1 2 3 29 29 H 1.08998 * 109.83982 * 301.50700 * 4 2 1 30 30 H 1.08996 * 109.84165 * 62.48235 * 4 2 1 31 31 H 1.09000 * 109.46831 * 305.43758 * 8 6 5 32 32 H 1.09000 * 109.47085 * 65.43490 * 8 6 5 33 33 H 1.09004 * 109.47107 * 299.99667 * 9 8 6 34 34 H 1.09000 * 109.47129 * 60.00076 * 9 8 6 35 35 H 0.96996 * 120.00109 * 179.97438 * 13 12 10 36 36 H 1.07998 * 120.04571 * 359.67132 * 19 18 5 37 37 H 1.08002 * 119.98237 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.97754 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8972 1.0263 0.0000 4 6 2.0444 -0.7306 -1.2485 5 7 3.5157 -0.7467 -1.1795 6 6 4.2680 -0.5087 -2.2721 7 8 5.4737 -0.4224 -2.1715 8 6 3.6111 -0.3498 -3.6191 9 6 4.6871 -0.2250 -4.6997 10 6 4.0301 -0.0654 -6.0466 11 1 2.9530 -0.0546 -6.1242 12 6 4.8044 0.0656 -7.1799 13 7 6.1160 0.0518 -7.0856 14 14 3.9901 0.2626 -8.8495 15 1 3.7771 1.7054 -9.1292 16 1 4.8641 -0.3211 -9.8986 17 1 2.6816 -0.4397 -8.8482 18 6 4.1083 -1.0188 0.0670 19 6 5.4574 -1.3254 0.1422 20 6 6.0377 -1.5861 1.3696 21 6 5.2716 -1.5402 2.5223 22 9 5.8424 -1.7932 3.7203 23 6 3.9234 -1.2362 2.4514 24 6 3.3342 -0.9749 1.2232 25 8 2.0090 -0.6801 1.1625 26 1 -0.3634 0.5087 0.8930 27 1 -0.3634 0.5189 -0.8870 28 1 -0.3634 -1.0277 -0.0058 29 1 1.6635 -1.7517 -1.2628 30 1 1.7221 -0.2020 -2.1455 31 1 2.9888 -1.2207 -3.8248 32 1 2.9918 0.5472 -3.6178 33 1 5.3094 0.6460 -4.4939 34 1 5.3064 -1.1220 -4.7010 35 1 6.6606 0.1437 -7.8829 36 1 6.0547 -1.3610 -0.7569 37 1 7.0892 -1.8256 1.4295 38 1 3.3298 -1.2019 3.3530 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291440404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:45 Heat of formation + Delta-G solvation = -88.601519 kcal Electronic energy + Delta-G solvation = -23224.351692 eV Core-core repulsion = 19560.748804 eV Total energy + Delta-G solvation = -3663.602889 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.90746 -41.42089 -39.08313 -37.60928 -35.42307 -33.67314 -32.73151 -31.43311 -30.37204 -28.91055 -26.81940 -25.78201 -23.67563 -23.21494 -21.84751 -20.81433 -19.18283 -18.66380 -17.50832 -17.25602 -16.52778 -16.33178 -15.80282 -15.64274 -15.46981 -15.00239 -14.77429 -14.53544 -14.06861 -13.63987 -13.58881 -13.48167 -13.00398 -12.84931 -12.52036 -12.31886 -12.26516 -12.07386 -11.70517 -11.39398 -11.21398 -11.01177 -10.91564 -10.68212 -10.12544 -10.06280 -9.75039 -9.28757 -9.14552 -8.66846 -8.41927 -7.77615 -6.05425 -4.10725 1.03608 1.17048 2.59598 2.79314 2.90509 3.27415 3.34145 3.35978 3.59871 4.16680 4.31962 4.38530 4.48753 4.59207 4.63954 4.86687 4.95635 5.03567 5.13272 5.29268 5.30026 5.30714 5.36424 5.52028 5.58473 5.76634 5.91156 5.96802 5.97066 6.11610 6.30399 6.43250 6.64609 6.75383 7.17705 7.30405 7.61911 7.70183 7.94147 8.21170 8.36257 8.96482 9.53624 11.05423 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021088 B = 0.003776 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.471959 B = 7413.009181 C = 8667.537796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.081 0.919 4 C 0.071 3.929 5 N -0.568 5.568 6 C 0.516 3.484 7 O -0.504 6.504 8 C -0.126 4.126 9 C 0.036 3.964 10 C -0.530 4.530 11 H 0.056 0.944 12 C 0.060 3.940 13 N -0.888 5.888 14 Si 0.894 3.106 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.082 3.918 19 C -0.089 4.089 20 C -0.159 4.159 21 C 0.101 3.899 22 F -0.140 7.140 23 C -0.165 4.165 24 C 0.116 3.884 25 O -0.308 6.308 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.027 0.973 34 H 0.024 0.976 35 H 0.262 0.738 36 H 0.177 0.823 37 H 0.140 0.860 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.097 -1.810 17.243 20.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 H 0.099 0.901 4 C -0.052 4.052 5 N -0.294 5.294 6 C 0.308 3.692 7 O -0.378 6.378 8 C -0.166 4.166 9 C -0.001 4.001 10 C -0.568 4.568 11 H 0.075 0.925 12 C -0.142 4.142 13 N -0.526 5.526 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.013 4.013 19 C -0.108 4.108 20 C -0.178 4.178 21 C 0.081 3.919 22 F -0.118 7.118 23 C -0.185 4.185 24 C 0.069 3.931 25 O -0.222 6.222 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.133 0.867 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.072 0.928 36 H 0.193 0.807 37 H 0.157 0.843 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.418 -1.772 17.232 19.718 hybrid contribution -0.286 0.123 -0.840 0.895 sum -9.703 -1.649 16.393 19.120 Atomic orbital electron populations 1.21772 0.90685 1.03909 1.03723 1.22867 0.96321 0.95598 0.83564 0.90148 1.22765 0.79122 1.02967 1.00353 1.46213 1.07071 1.68922 1.07165 1.21920 0.87445 0.74085 0.85737 1.90524 1.14723 1.47405 1.85162 1.21971 1.02075 1.02612 0.89956 1.18943 0.92238 0.98731 0.90195 1.21154 0.92915 1.51134 0.91643 0.92529 1.25015 0.94797 0.95167 0.99265 1.69984 1.03869 1.49492 1.29278 0.86577 0.79273 0.78286 0.83735 1.20615 1.21156 1.19846 1.18152 0.93877 1.04509 0.84744 1.21747 0.93260 0.96040 0.99794 1.21095 1.01003 1.04894 0.90814 1.17243 0.90817 1.03017 0.80818 1.91483 1.84816 1.91874 1.43653 1.20112 0.93377 1.08361 0.96674 1.18083 0.83392 1.00174 0.91488 1.86007 1.20120 1.73635 1.42435 0.90881 0.89608 0.91032 0.89359 0.86743 0.89758 0.89637 0.95482 0.95750 0.92817 0.80665 0.84251 0.83889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.58 37.16 0.36 -0.58 16 2 C 0.07 0.72 3.58 -26.46 -0.09 0.62 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 4 C 0.07 0.77 5.70 -3.33 -0.02 0.75 16 5 N -0.57 -8.55 3.01 -112.31 -0.34 -8.89 16 6 C 0.52 9.48 7.59 -10.98 -0.08 9.40 16 7 O -0.50 -10.93 12.86 5.54 0.07 -10.86 16 8 C -0.13 -2.37 4.12 -27.88 -0.11 -2.48 16 9 C 0.04 0.92 4.28 -27.88 -0.12 0.81 16 10 C -0.53 -14.33 9.11 -34.44 -0.31 -14.64 16 11 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 14 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 C 0.08 1.25 6.33 -83.32 -0.53 0.73 16 19 C -0.09 -1.38 8.93 -39.46 -0.35 -1.74 16 20 C -0.16 -2.14 10.02 -39.48 -0.40 -2.53 16 21 C 0.10 1.32 7.29 -39.44 -0.29 1.04 16 22 F -0.14 -1.79 17.26 2.25 0.04 -1.75 16 23 C -0.17 -2.08 9.95 -39.36 -0.39 -2.48 16 24 C 0.12 1.58 6.51 -39.05 -0.25 1.33 16 25 O -0.31 -3.73 9.97 -19.43 -0.19 -3.93 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.11 1.05 6.43 -51.93 -0.33 0.72 16 31 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 32 H 0.09 1.42 7.62 -51.93 -0.40 1.03 16 33 H 0.03 0.75 8.04 -51.93 -0.42 0.34 16 34 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.18 3.10 5.17 -52.56 -0.27 2.83 16 37 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 38 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 322.06 15.07 4.85 4.85 Total: -1.00 -32.11 322.06 -7.31 -39.42 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.76 Total: -0.79 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -2.70 Total: -8.20 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.40 Total: -34.66 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.12 Total: -14.79 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.11 -7.31 -39.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291440404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.180 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds