Wall clock time and date at job start Tue Mar 31 2020 07:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.68735 * 2 1 4 4 C 1.53526 * 109.57772 * 239.66503 * 2 1 3 5 5 N 1.47304 * 107.56717 * 181.99160 * 4 2 1 6 6 C 1.34779 * 121.17021 * 222.01706 * 5 4 2 7 7 O 1.21297 * 120.00456 * 174.17029 * 6 5 4 8 8 C 1.50704 * 119.99853 * 354.17045 * 6 5 4 9 9 C 1.52997 * 109.47064 * 185.43440 * 8 6 5 10 10 C 1.50702 * 109.46818 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00289 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99598 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00386 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 119.99605 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47159 * 89.99810 * 14 12 10 16 16 H 1.48500 * 109.47306 * 209.99739 * 14 12 10 17 17 H 1.48507 * 109.47511 * 329.99872 * 14 12 10 18 18 C 1.40666 * 117.66974 * 41.99402 * 5 4 2 19 19 C 1.38556 * 120.06887 * 166.37416 * 18 5 4 20 20 C 1.38253 * 119.91091 * 179.69912 * 19 18 5 21 21 C 1.38486 * 120.03237 * 359.96388 * 20 19 18 22 22 F 1.35098 * 119.87870 * 180.11914 * 21 20 19 23 23 C 1.38385 * 120.23989 * 0.12001 * 21 20 19 24 24 C 1.38701 * 120.03768 * 359.94913 * 23 21 20 25 25 O 1.35900 * 119.64498 * 179.85015 * 24 23 21 26 26 H 1.09006 * 109.47191 * 299.66943 * 1 2 3 27 27 H 1.08999 * 109.47404 * 59.67076 * 1 2 3 28 28 H 1.09005 * 109.47151 * 179.67447 * 1 2 3 29 29 H 1.08998 * 109.83982 * 301.50700 * 4 2 1 30 30 H 1.08996 * 109.84165 * 62.48235 * 4 2 1 31 31 H 1.09000 * 109.46831 * 305.43758 * 8 6 5 32 32 H 1.09000 * 109.47085 * 65.43490 * 8 6 5 33 33 H 1.09004 * 109.47107 * 299.99667 * 9 8 6 34 34 H 1.09000 * 109.47129 * 60.00076 * 9 8 6 35 35 H 0.96996 * 120.00109 * 179.97438 * 13 12 10 36 36 H 1.07998 * 120.04571 * 359.67132 * 19 18 5 37 37 H 1.08002 * 119.98237 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.97754 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8972 1.0263 0.0000 4 6 2.0444 -0.7306 -1.2485 5 7 3.5157 -0.7467 -1.1795 6 6 4.2680 -0.5087 -2.2721 7 8 5.4737 -0.4224 -2.1715 8 6 3.6111 -0.3498 -3.6191 9 6 4.6871 -0.2250 -4.6997 10 6 4.0301 -0.0654 -6.0466 11 1 2.9530 -0.0546 -6.1242 12 6 4.8044 0.0656 -7.1799 13 7 6.1160 0.0518 -7.0856 14 14 3.9901 0.2626 -8.8495 15 1 3.7771 1.7054 -9.1292 16 1 4.8641 -0.3211 -9.8986 17 1 2.6816 -0.4397 -8.8482 18 6 4.1083 -1.0188 0.0670 19 6 5.4574 -1.3254 0.1422 20 6 6.0377 -1.5861 1.3696 21 6 5.2716 -1.5402 2.5223 22 9 5.8424 -1.7932 3.7203 23 6 3.9234 -1.2362 2.4514 24 6 3.3342 -0.9749 1.2232 25 8 2.0090 -0.6801 1.1625 26 1 -0.3634 0.5087 0.8930 27 1 -0.3634 0.5189 -0.8870 28 1 -0.3634 -1.0277 -0.0058 29 1 1.6635 -1.7517 -1.2628 30 1 1.7221 -0.2020 -2.1455 31 1 2.9888 -1.2207 -3.8248 32 1 2.9918 0.5472 -3.6178 33 1 5.3094 0.6460 -4.4939 34 1 5.3064 -1.1220 -4.7010 35 1 6.6606 0.1437 -7.8829 36 1 6.0547 -1.3610 -0.7569 37 1 7.0892 -1.8256 1.4295 38 1 3.3298 -1.2019 3.3530 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291440404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:52:44 Heat of formation + Delta-G solvation = -107.765548 kcal Electronic energy + Delta-G solvation = -23225.182707 eV Core-core repulsion = 19560.748804 eV Total energy + Delta-G solvation = -3664.433904 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.95452 -42.52699 -40.36663 -38.62834 -36.62828 -35.64511 -33.56074 -33.21538 -31.53187 -30.08030 -27.95145 -27.34352 -24.94162 -24.21101 -23.41389 -21.93713 -20.48615 -19.67632 -18.95493 -18.43133 -18.04944 -17.46578 -17.04715 -16.83593 -16.67152 -16.47255 -16.02234 -15.72988 -15.32571 -14.95897 -14.79307 -14.58352 -14.20147 -14.03473 -13.89568 -13.40460 -13.30417 -13.12267 -12.97012 -12.82479 -12.59130 -12.48306 -12.32196 -11.96914 -11.80620 -11.62397 -11.30386 -11.18853 -10.61204 -10.56468 -9.73625 -8.90991 -8.18249 -6.32073 -0.09054 0.09293 1.42644 1.43114 1.45893 1.48931 1.56836 1.96078 2.42942 2.48877 3.15818 3.27123 3.28339 3.42089 3.65241 3.87461 3.91484 3.94053 4.05808 4.15290 4.29731 4.38326 4.45427 4.54999 4.57525 4.83737 4.90432 4.91184 4.97545 5.04808 5.14850 5.29448 5.33709 5.49044 5.58811 5.67365 5.83120 6.02914 6.15425 6.19607 6.84531 6.95597 7.38561 8.94314 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.021088 B = 0.003776 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.471959 B = 7413.009181 C = 8667.537796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.071 3.929 3 H 0.078 0.922 4 C 0.061 3.939 5 N -0.562 5.562 6 C 0.514 3.486 7 O -0.552 6.552 8 C -0.112 4.112 9 C 0.042 3.958 10 C -0.541 4.541 11 H 0.080 0.920 12 C -0.005 4.005 13 N -0.937 5.937 14 Si 0.972 3.028 15 H -0.273 1.273 16 H -0.289 1.289 17 H -0.253 1.253 18 C 0.060 3.940 19 C -0.108 4.108 20 C -0.160 4.160 21 C 0.105 3.895 22 F -0.136 7.136 23 C -0.159 4.159 24 C 0.122 3.878 25 O -0.308 6.308 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.135 0.865 31 H 0.111 0.889 32 H 0.114 0.886 33 H -0.014 1.014 34 H -0.016 1.016 35 H 0.262 0.738 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.612 -1.723 17.841 22.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.014 3.986 3 H 0.096 0.904 4 C -0.060 4.060 5 N -0.287 5.287 6 C 0.307 3.693 7 O -0.429 6.429 8 C -0.151 4.151 9 C 0.004 3.996 10 C -0.579 4.579 11 H 0.098 0.902 12 C -0.203 4.203 13 N -0.577 5.577 14 Si 0.796 3.204 15 H -0.198 1.198 16 H -0.215 1.215 17 H -0.177 1.177 18 C -0.034 4.034 19 C -0.128 4.128 20 C -0.179 4.179 21 C 0.085 3.915 22 F -0.114 7.114 23 C -0.179 4.179 24 C 0.074 3.926 25 O -0.222 6.222 26 H 0.097 0.903 27 H 0.125 0.875 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.153 0.847 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.004 0.996 34 H 0.002 0.998 35 H 0.071 0.929 36 H 0.167 0.833 37 H 0.171 0.829 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -13.001 -1.692 17.870 22.164 hybrid contribution 0.811 0.084 -0.915 1.226 sum -12.189 -1.608 16.955 20.944 Atomic orbital electron populations 1.21816 0.87692 1.04773 1.05089 1.23148 0.98382 0.94912 0.82131 0.90441 1.23193 0.76303 1.04519 1.01981 1.46110 1.08696 1.67604 1.06245 1.21779 0.86946 0.74025 0.86597 1.90531 1.16717 1.49753 1.85934 1.21717 1.00153 1.05137 0.88127 1.18716 0.93242 0.94974 0.92682 1.21681 0.94096 1.49972 0.92137 0.90217 1.26101 0.95274 0.94789 1.04119 1.70167 1.05926 1.51150 1.30486 0.85352 0.78687 0.78582 0.77821 1.19808 1.21512 1.17686 1.18313 0.94060 1.05687 0.85374 1.21557 0.93794 0.97784 0.99655 1.21184 1.01826 1.04525 0.90370 1.17246 0.91081 1.02562 0.80628 1.91496 1.84842 1.91788 1.43300 1.20372 0.93268 1.06982 0.97250 1.18126 0.83972 0.99515 0.91003 1.86030 1.18918 1.73650 1.43617 0.90281 0.87465 0.90420 0.87850 0.84703 0.87127 0.86781 0.99585 0.99783 0.92905 0.83345 0.82929 0.81421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.58 71.98 0.69 -0.55 16 2 C 0.07 1.18 3.58 30.77 0.11 1.29 16 3 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 4 C 0.06 1.16 5.70 86.40 0.49 1.65 16 5 N -0.56 -16.60 3.01 -627.64 -1.89 -18.49 16 6 C 0.51 19.33 7.59 87.66 0.67 20.00 16 7 O -0.55 -25.61 12.86 -3.08 -0.04 -25.65 16 8 C -0.11 -4.13 4.12 29.85 0.12 -4.01 16 9 C 0.04 2.19 4.28 29.85 0.13 2.32 16 10 C -0.54 -29.24 9.11 25.60 0.23 -29.00 16 11 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 12 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 13 N -0.94 -57.96 13.29 21.45 0.28 -57.67 16 14 Si 0.97 42.71 29.54 68.60 2.03 44.74 16 15 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 16 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 17 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 18 C 0.06 1.84 6.33 38.03 0.24 2.08 16 19 C -0.11 -3.51 8.93 22.35 0.20 -3.31 16 20 C -0.16 -4.35 10.02 22.33 0.22 -4.12 16 21 C 0.11 2.62 7.29 22.36 0.16 2.78 16 22 F -0.14 -3.26 17.26 44.97 0.78 -2.48 16 23 C -0.16 -3.69 9.95 22.42 0.22 -3.47 16 24 C 0.12 3.13 6.51 22.61 0.15 3.28 16 25 O -0.31 -6.67 9.97 -92.42 -0.92 -7.59 16 26 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.14 1.99 6.43 -2.39 -0.02 1.97 16 31 H 0.11 3.49 8.09 -2.39 -0.02 3.47 16 32 H 0.11 3.54 7.62 -2.39 -0.02 3.52 16 33 H -0.01 -0.86 8.04 -2.39 -0.02 -0.88 16 34 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 35 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.15 5.74 5.17 -4.02 -0.02 5.72 16 37 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 38 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -73.38 322.06 5.41 -67.97 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.07 Total: 10.09 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 4.10 Total: -10.91 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -1.61 Total: -76.17 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -0.96 Total: -33.24 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.48 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -73.38 5.41 -67.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291440404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.797 kcal (2) G-P(sol) polarization free energy of solvation -73.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds