Wall clock time and date at job start Tue Mar 31 2020 06:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46932 * 2 1 4 4 H 1.09000 * 109.83760 * 179.30879 * 3 2 1 5 5 C 1.52441 * 109.81081 * 58.47789 * 3 2 1 6 6 C 1.39126 * 123.57026 * 49.00717 * 5 3 2 7 7 C 1.32927 * 115.64829 * 179.36694 * 6 5 3 8 8 S 1.75710 * 109.58960 * 0.09784 * 7 6 5 9 9 C 1.34638 * 122.62022 * 228.70038 * 5 3 2 10 10 C 1.51401 * 125.09904 * 0.68151 * 9 5 3 11 11 C 1.53184 * 109.06911 * 341.81907 * 10 9 5 12 12 N 1.46970 * 109.79782 * 300.13983 * 3 2 1 13 13 C 1.34782 * 120.87271 * 344.96615 * 12 3 2 14 14 O 1.21279 * 119.99539 * 353.77330 * 13 12 3 15 15 C 1.50698 * 119.99987 * 173.77337 * 13 12 3 16 16 C 1.52996 * 109.46842 * 179.97438 * 15 13 12 17 17 C 1.50708 * 109.46981 * 180.02562 * 16 15 13 18 18 H 1.07993 * 119.99712 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99587 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00693 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99700 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46984 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47216 * 119.99451 * 21 19 17 24 24 H 1.48492 * 109.46959 * 239.99687 * 21 19 17 25 25 H 1.09001 * 109.47285 * 172.25046 * 1 2 3 26 26 H 1.09004 * 109.47168 * 292.24462 * 1 2 3 27 27 H 1.08996 * 109.47656 * 52.24699 * 1 2 3 28 28 H 1.08999 * 109.47205 * 240.00166 * 2 1 3 29 29 H 1.09002 * 109.47460 * 119.99734 * 2 1 3 30 30 H 1.07995 * 122.17850 * 359.33932 * 6 5 3 31 31 H 1.07995 * 125.20642 * 180.11465 * 7 6 5 32 32 H 1.09001 * 109.53705 * 221.93808 * 10 9 5 33 33 H 1.09006 * 109.53393 * 101.69359 * 10 9 5 34 34 H 1.09003 * 109.61968 * 285.80716 * 11 10 9 35 35 H 1.09000 * 109.76951 * 165.35241 * 11 10 9 36 36 H 1.08994 * 109.47300 * 300.00353 * 15 13 12 37 37 H 1.09002 * 109.46682 * 60.00278 * 15 13 12 38 38 H 1.09002 * 109.47498 * 300.00036 * 16 15 13 39 39 H 1.08993 * 109.47288 * 60.00479 * 16 15 13 40 40 H 0.96996 * 120.00425 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1298 1.4496 0.0124 5 6 1.5051 2.1796 1.2226 6 6 1.5730 1.6734 2.5167 7 6 1.0696 2.4544 3.4672 8 16 0.4534 3.9346 2.7483 9 6 0.9256 3.3922 1.1430 10 6 0.7123 4.1729 -0.1366 11 6 1.6328 3.6115 -1.2247 12 7 1.5512 2.1433 -1.1959 13 6 1.0364 1.4588 -2.2366 14 8 1.0746 0.2466 -2.2434 15 6 0.4133 2.1997 -3.3915 16 6 -0.0888 1.1950 -4.4304 17 6 -0.7114 1.9359 -5.5857 18 1 -0.7458 3.0153 -5.5793 19 6 -1.2379 1.2356 -6.6503 20 7 -1.1965 -0.0788 -6.6579 21 14 -2.0102 2.1539 -8.0821 22 1 -1.9322 3.6157 -7.8324 23 1 -1.2799 1.8253 -9.3326 24 1 -3.4328 1.7508 -8.2190 25 1 -0.3634 -1.0183 -0.1386 26 1 -0.3634 0.3890 0.9512 27 1 -0.3634 0.6292 -0.8125 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0061 0.7084 2.7348 31 1 1.0436 2.2159 4.5201 32 1 0.9477 5.2235 0.0338 33 1 -0.3265 4.0775 -0.4529 34 1 2.6592 3.9248 -1.0333 35 1 1.3148 3.9767 -2.2012 36 1 -0.4229 2.7983 -3.0305 37 1 1.1572 2.8526 -3.8480 38 1 0.7477 0.5968 -4.7914 39 1 -0.8326 0.5418 -3.9743 40 1 -1.5665 -0.5715 -7.4070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291732668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:00 Heat of formation + Delta-G solvation = 7.136450 kcal Electronic energy + Delta-G solvation = -21837.566400 eV Core-core repulsion = 18744.328197 eV Total energy + Delta-G solvation = -3093.238203 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.63148 -38.13768 -35.46580 -34.12166 -33.12525 -31.54251 -30.52303 -28.69209 -26.39959 -25.25257 -24.17247 -22.59471 -21.76641 -20.91088 -18.80768 -17.88637 -17.36696 -16.61075 -16.15081 -15.60379 -15.43796 -14.80507 -14.64350 -14.39329 -13.80578 -13.44713 -13.26026 -13.21083 -12.91959 -12.58930 -12.18035 -12.11507 -11.89333 -11.81712 -11.42593 -11.15615 -11.12363 -10.95620 -10.88249 -10.67545 -10.57364 -10.51851 -9.94257 -9.55824 -9.09035 -8.66820 -8.57741 -8.45275 -8.32696 -8.27825 -5.96372 -4.00617 0.90253 1.51132 1.87992 2.58629 3.15340 3.25449 3.32289 3.39772 3.42679 4.46624 4.55540 4.64292 4.87128 5.04712 5.08515 5.17889 5.29775 5.35145 5.38879 5.51042 5.56555 5.59611 5.64868 5.82459 5.88808 6.07369 6.10610 6.14435 6.19822 6.21134 6.34638 6.41836 6.59437 6.73269 6.88156 6.96942 7.74514 7.76936 7.86272 8.06819 8.38798 8.77847 9.07997 9.63099 11.14505 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.026801 B = 0.003850 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.469205 B = 7270.687126 C = 7831.300023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.129 4.129 3 C 0.212 3.788 4 H 0.078 0.922 5 C -0.110 4.110 6 C -0.116 4.116 7 C -0.218 4.218 8 S 0.081 5.919 9 C -0.167 4.167 10 C -0.067 4.067 11 C 0.115 3.885 12 N -0.622 5.622 13 C 0.518 3.482 14 O -0.518 6.518 15 C -0.130 4.130 16 C 0.038 3.962 17 C -0.526 4.526 18 H 0.056 0.944 19 C 0.059 3.941 20 N -0.889 5.889 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.049 0.951 26 H 0.034 0.966 27 H 0.059 0.941 28 H 0.117 0.883 29 H 0.051 0.949 30 H 0.138 0.862 31 H 0.162 0.838 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.024 0.976 39 H 0.023 0.977 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.693 8.430 19.619 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C 0.106 3.894 4 H 0.095 0.905 5 C -0.123 4.123 6 C -0.147 4.147 7 C -0.353 4.353 8 S 0.347 5.653 9 C -0.284 4.284 10 C -0.107 4.107 11 C -0.010 4.010 12 N -0.358 5.358 13 C 0.309 3.691 14 O -0.393 6.393 15 C -0.170 4.170 16 C 0.001 3.999 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.069 0.931 30 H 0.156 0.844 31 H 0.180 0.820 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.939 8.909 20.114 22.786 hybrid contribution 0.140 -0.666 -0.993 1.204 sum 6.079 8.243 19.121 21.691 Atomic orbital electron populations 1.21738 0.95304 1.01667 1.00308 1.22142 0.97445 0.93512 1.03477 1.20087 0.96812 0.91982 0.80521 0.90456 1.19922 1.02343 0.94564 0.95457 1.19920 1.02286 1.01192 0.91257 1.25280 1.08367 0.98479 1.03190 1.84116 1.61669 1.20479 0.99061 1.24644 1.06678 0.99318 0.97742 1.20714 1.01706 0.98178 0.90086 1.21673 0.99469 0.80207 0.99651 1.48300 1.64017 1.06453 1.17002 1.21403 0.76443 0.88355 0.82886 1.90593 1.56174 1.14172 1.78373 1.21930 0.99813 1.00933 0.94355 1.18899 0.96801 0.93038 0.91207 1.21250 1.38516 0.92978 1.03705 0.92623 1.25012 0.96134 0.94797 0.98369 1.70001 1.45696 1.05776 1.31298 0.86563 0.79034 0.79963 0.82568 1.19755 1.21022 1.21042 0.93195 0.94663 0.92191 0.86555 0.93096 0.84405 0.82002 0.89591 0.89521 0.90973 0.88060 0.90411 0.90342 0.95798 0.95829 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.48 37.15 0.32 -1.86 16 2 C -0.13 -1.90 4.88 -26.73 -0.13 -2.03 16 3 C 0.21 2.86 3.46 -67.96 -0.24 2.63 16 4 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 5 C -0.11 -1.35 4.32 -104.70 -0.45 -1.81 16 6 C -0.12 -1.26 9.23 -41.09 -0.38 -1.64 16 7 C -0.22 -2.14 11.20 28.90 0.32 -1.81 16 8 S 0.08 0.82 23.31 -107.50 -2.51 -1.68 16 9 C -0.17 -1.94 6.39 -35.24 -0.23 -2.17 16 10 C -0.07 -0.69 6.43 -27.44 -0.18 -0.87 16 11 C 0.12 1.29 6.30 -3.64 -0.02 1.26 16 12 N -0.62 -9.07 2.76 -165.51 -0.46 -9.52 16 13 C 0.52 9.62 5.84 -10.98 -0.06 9.56 16 14 O -0.52 -11.19 10.79 5.56 0.06 -11.13 16 15 C -0.13 -2.58 4.06 -27.89 -0.11 -2.69 16 16 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 17 C -0.53 -14.71 9.11 -34.44 -0.31 -15.02 16 18 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 21 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.03 0.53 7.27 -51.93 -0.38 0.15 16 27 H 0.06 1.13 5.22 -51.93 -0.27 0.86 16 28 H 0.12 2.04 5.62 -52.58 -0.30 1.74 16 29 H 0.05 0.64 7.42 -51.93 -0.39 0.25 16 30 H 0.14 1.30 7.50 -52.49 -0.39 0.91 16 31 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 1.08 5.99 -51.93 -0.31 0.77 16 36 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 37 H 0.08 1.41 7.48 -51.93 -0.39 1.02 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 39 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 326.05 15.07 4.91 4.91 Total: -1.00 -32.19 326.05 -9.73 -41.92 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -5.76 Total: -0.56 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -1.69 Total: -13.98 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: 0.28 Total: -35.95 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.06 Total: -11.13 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.19 -9.73 -41.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291732668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.055 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds