Wall clock time and date at job start Tue Mar 31 2020 06:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46932 * 2 1 4 4 H 1.09000 * 109.83760 * 179.30879 * 3 2 1 5 5 C 1.52441 * 109.81081 * 58.47789 * 3 2 1 6 6 C 1.39126 * 123.57026 * 49.00717 * 5 3 2 7 7 C 1.32927 * 115.64829 * 179.36694 * 6 5 3 8 8 S 1.75710 * 109.58960 * 0.09784 * 7 6 5 9 9 C 1.34638 * 122.62022 * 228.70038 * 5 3 2 10 10 C 1.51401 * 125.09904 * 0.68151 * 9 5 3 11 11 C 1.53184 * 109.06911 * 341.81907 * 10 9 5 12 12 N 1.46970 * 109.79782 * 300.13983 * 3 2 1 13 13 C 1.34782 * 120.87271 * 344.96615 * 12 3 2 14 14 O 1.21279 * 119.99539 * 353.77330 * 13 12 3 15 15 C 1.50698 * 119.99987 * 173.77337 * 13 12 3 16 16 C 1.52996 * 109.46842 * 179.97438 * 15 13 12 17 17 C 1.50708 * 109.46981 * 180.02562 * 16 15 13 18 18 H 1.07993 * 119.99712 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99587 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00693 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99700 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46984 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47216 * 119.99451 * 21 19 17 24 24 H 1.48492 * 109.46959 * 239.99687 * 21 19 17 25 25 H 1.09001 * 109.47285 * 172.25046 * 1 2 3 26 26 H 1.09004 * 109.47168 * 292.24462 * 1 2 3 27 27 H 1.08996 * 109.47656 * 52.24699 * 1 2 3 28 28 H 1.08999 * 109.47205 * 240.00166 * 2 1 3 29 29 H 1.09002 * 109.47460 * 119.99734 * 2 1 3 30 30 H 1.07995 * 122.17850 * 359.33932 * 6 5 3 31 31 H 1.07995 * 125.20642 * 180.11465 * 7 6 5 32 32 H 1.09001 * 109.53705 * 221.93808 * 10 9 5 33 33 H 1.09006 * 109.53393 * 101.69359 * 10 9 5 34 34 H 1.09003 * 109.61968 * 285.80716 * 11 10 9 35 35 H 1.09000 * 109.76951 * 165.35241 * 11 10 9 36 36 H 1.08994 * 109.47300 * 300.00353 * 15 13 12 37 37 H 1.09002 * 109.46682 * 60.00278 * 15 13 12 38 38 H 1.09002 * 109.47498 * 300.00036 * 16 15 13 39 39 H 1.08993 * 109.47288 * 60.00479 * 16 15 13 40 40 H 0.96996 * 120.00425 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1298 1.4496 0.0124 5 6 1.5051 2.1796 1.2226 6 6 1.5730 1.6734 2.5167 7 6 1.0696 2.4544 3.4672 8 16 0.4534 3.9346 2.7483 9 6 0.9256 3.3922 1.1430 10 6 0.7123 4.1729 -0.1366 11 6 1.6328 3.6115 -1.2247 12 7 1.5512 2.1433 -1.1959 13 6 1.0364 1.4588 -2.2366 14 8 1.0746 0.2466 -2.2434 15 6 0.4133 2.1997 -3.3915 16 6 -0.0888 1.1950 -4.4304 17 6 -0.7114 1.9359 -5.5857 18 1 -0.7458 3.0153 -5.5793 19 6 -1.2379 1.2356 -6.6503 20 7 -1.1965 -0.0788 -6.6579 21 14 -2.0102 2.1539 -8.0821 22 1 -1.9322 3.6157 -7.8324 23 1 -1.2799 1.8253 -9.3326 24 1 -3.4328 1.7508 -8.2190 25 1 -0.3634 -1.0183 -0.1386 26 1 -0.3634 0.3890 0.9512 27 1 -0.3634 0.6292 -0.8125 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0061 0.7084 2.7348 31 1 1.0436 2.2159 4.5201 32 1 0.9477 5.2235 0.0338 33 1 -0.3265 4.0775 -0.4529 34 1 2.6592 3.9248 -1.0333 35 1 1.3148 3.9767 -2.2012 36 1 -0.4229 2.7983 -3.0305 37 1 1.1572 2.8526 -3.8480 38 1 0.7477 0.5968 -4.7914 39 1 -0.8326 0.5418 -3.9743 40 1 -1.5665 -0.5715 -7.4070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291732668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:59 Heat of formation + Delta-G solvation = -11.239638 kcal Electronic energy + Delta-G solvation = -21838.363247 eV Core-core repulsion = 18744.328197 eV Total energy + Delta-G solvation = -3094.035050 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.84106 -39.27513 -36.52483 -35.78853 -34.72538 -32.99282 -32.04443 -29.73368 -27.97334 -26.72654 -25.14933 -24.06982 -22.87522 -22.34391 -20.11684 -18.92263 -18.72015 -17.99679 -17.50274 -16.94383 -16.71570 -16.34732 -15.95792 -15.64924 -14.98937 -14.83695 -14.46049 -14.23742 -14.14451 -13.99337 -13.63393 -13.46397 -13.18744 -12.88924 -12.84333 -12.73249 -12.43672 -12.39227 -12.20390 -11.99829 -11.92871 -11.73713 -11.66873 -11.50025 -11.22199 -10.55847 -9.93278 -9.64363 -9.44452 -9.19659 -8.16406 -6.29917 0.09124 0.71621 1.08576 1.42945 1.43966 1.57094 1.71260 1.78056 2.04119 2.44123 3.16940 3.62163 3.71531 3.89437 4.06036 4.16128 4.22566 4.30771 4.32280 4.45541 4.48332 4.54292 4.56632 4.70254 4.76524 4.78747 4.89024 5.02272 5.05915 5.11127 5.16896 5.28858 5.36798 5.46628 5.52708 5.55314 5.66615 5.79856 5.88074 6.20195 6.48163 6.89233 7.37185 7.40984 8.96233 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.026801 B = 0.003850 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.469205 B = 7270.687126 C = 7831.300023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 C 0.211 3.789 4 H 0.091 0.909 5 C -0.122 4.122 6 C -0.131 4.131 7 C -0.213 4.213 8 S 0.102 5.898 9 C -0.183 4.183 10 C -0.064 4.064 11 C 0.107 3.893 12 N -0.613 5.613 13 C 0.517 3.483 14 O -0.560 6.560 15 C -0.118 4.118 16 C 0.046 3.954 17 C -0.540 4.540 18 H 0.075 0.925 19 C -0.005 4.005 20 N -0.937 5.937 21 Si 0.970 3.030 22 H -0.252 1.252 23 H -0.281 1.281 24 H -0.282 1.282 25 H 0.036 0.964 26 H 0.047 0.953 27 H 0.030 0.970 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.149 0.851 31 H 0.187 0.813 32 H 0.114 0.886 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.102 0.898 38 H -0.016 1.016 39 H -0.019 1.019 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.961 11.355 20.976 24.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.106 3.894 4 H 0.108 0.892 5 C -0.135 4.135 6 C -0.161 4.161 7 C -0.348 4.348 8 S 0.368 5.632 9 C -0.301 4.301 10 C -0.104 4.104 11 C -0.016 4.016 12 N -0.347 5.347 13 C 0.308 3.692 14 O -0.439 6.439 15 C -0.158 4.158 16 C 0.009 3.991 17 C -0.578 4.578 18 H 0.093 0.907 19 C -0.203 4.203 20 N -0.577 5.577 21 Si 0.795 3.205 22 H -0.176 1.176 23 H -0.207 1.207 24 H -0.208 1.208 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.167 0.833 31 H 0.205 0.795 32 H 0.133 0.867 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.002 0.998 39 H -0.001 1.001 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.226 11.894 21.510 25.356 hybrid contribution 0.068 -1.579 -1.309 2.052 sum 6.294 10.315 20.201 23.539 Atomic orbital electron populations 1.21615 0.96593 1.00213 0.99622 1.21982 0.96138 0.94825 1.03132 1.20116 0.97492 0.91124 0.80709 0.89169 1.19843 1.03435 0.94944 0.95291 1.20040 1.03164 1.02065 0.90855 1.25635 1.07010 0.97904 1.04299 1.84062 1.61019 1.20359 0.97751 1.24893 1.06615 0.99467 0.99084 1.20739 1.00924 0.99585 0.89179 1.21994 1.01272 0.77754 1.00602 1.48220 1.62288 1.08041 1.16107 1.21102 0.76732 0.87762 0.83624 1.90612 1.58072 1.15830 1.79408 1.21672 1.01089 0.99486 0.93564 1.18653 0.94233 0.93525 0.92705 1.21741 1.38065 0.93996 1.04031 0.90719 1.26093 0.96717 0.95619 1.01860 1.70177 1.47050 1.07975 1.32506 0.85322 0.77646 0.79400 0.78178 1.17560 1.20650 1.20801 0.94512 0.93376 0.95070 0.89653 0.90557 0.83309 0.79548 0.86742 0.90336 0.88654 0.87416 0.88666 0.87982 0.99790 1.00097 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.15 8.48 71.98 0.61 -3.54 16 2 C -0.12 -3.70 4.88 30.59 0.15 -3.55 16 3 C 0.21 5.49 3.46 44.72 0.15 5.65 16 4 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 5 C -0.12 -2.76 4.32 -19.92 -0.09 -2.84 16 6 C -0.13 -2.52 9.23 21.31 0.20 -2.32 16 7 C -0.21 -3.52 11.20 66.65 0.75 -2.78 16 8 S 0.10 1.78 23.31 -56.49 -1.32 0.46 16 9 C -0.18 -3.82 6.39 25.08 0.16 -3.66 16 10 C -0.06 -1.16 6.43 30.13 0.19 -0.97 16 11 C 0.11 2.14 6.30 86.33 0.54 2.68 16 12 N -0.61 -17.41 2.76 -795.94 -2.19 -19.60 16 13 C 0.52 19.71 5.84 87.66 0.51 20.22 16 14 O -0.56 -25.78 10.79 -3.03 -0.03 -25.81 16 15 C -0.12 -4.72 4.06 29.85 0.12 -4.60 16 16 C 0.05 2.57 4.26 29.85 0.13 2.69 16 17 C -0.54 -30.57 9.11 25.60 0.23 -30.33 16 18 H 0.07 3.85 7.74 -2.91 -0.02 3.83 16 19 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 20 N -0.94 -59.36 13.29 21.45 0.28 -59.07 16 21 Si 0.97 44.19 29.54 68.60 2.03 46.21 16 22 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 25 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.05 1.45 7.27 -2.38 -0.02 1.43 16 27 H 0.03 1.21 5.22 -2.39 -0.01 1.20 16 28 H 0.09 3.15 5.62 -12.72 -0.07 3.08 16 29 H 0.08 1.85 7.42 -2.39 -0.02 1.83 16 30 H 0.15 2.45 7.50 -2.91 -0.02 2.42 16 31 H 0.19 2.05 8.06 -2.91 -0.02 2.03 16 32 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.11 2.01 5.99 -2.39 -0.01 2.00 16 36 H 0.10 3.44 8.12 -2.39 -0.02 3.42 16 37 H 0.10 3.55 7.48 -2.39 -0.02 3.53 16 38 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 39 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 40 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -73.46 326.05 3.87 -69.59 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.98 Total: 11.42 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 4.12 Total: -23.20 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -1.91 Total: -78.68 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.03 Total: -25.81 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -1.32 Total: 0.46 kcal Total: -73.46 3.87 -69.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291732668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.350 kcal (2) G-P(sol) polarization free energy of solvation -73.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds