Wall clock time and date at job start Tue Mar 31 2020 08:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76196 * 102.99900 * 2 1 4 4 C 1.38991 * 120.08238 * 359.97438 * 3 2 1 5 5 C 1.38068 * 119.91899 * 180.02562 * 4 3 2 6 6 C 1.38316 * 120.08105 * 0.02562 * 5 4 3 7 7 C 1.38288 * 120.16309 * 359.97438 * 6 5 4 8 8 C 1.38105 * 120.07563 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.03683 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.46989 * 145.00038 * 9 8 7 11 11 C 1.52999 * 109.46971 * 265.00285 * 9 8 7 12 12 N 1.46501 * 109.46939 * 25.00114 * 9 8 7 13 13 C 1.34780 * 119.99862 * 154.99832 * 12 9 8 14 14 O 1.21286 * 119.99954 * 359.97438 * 13 12 9 15 15 C 1.50701 * 120.00030 * 179.97438 * 13 12 9 16 16 C 1.52993 * 109.46977 * 179.97438 * 15 13 12 17 17 C 1.50705 * 109.47074 * 180.02562 * 16 15 13 18 18 H 1.07996 * 119.99833 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99978 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00238 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00015 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46978 * 90.00429 * 21 19 17 23 23 H 1.48501 * 109.46866 * 210.00087 * 21 19 17 24 24 H 1.48493 * 109.47232 * 330.00430 * 21 19 17 25 25 H 1.09001 * 109.46868 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46441 * 299.99974 * 1 2 3 27 27 H 1.08993 * 109.47015 * 60.00002 * 1 2 3 28 28 H 1.08003 * 120.03899 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.95580 * 179.97438 * 5 4 3 30 30 H 1.07996 * 119.92040 * 179.97438 * 6 5 4 31 31 H 1.08001 * 119.95968 * 180.28458 * 7 6 5 32 32 H 1.09006 * 109.46768 * 180.02562 * 11 9 8 33 33 H 1.09000 * 109.47146 * 299.99362 * 11 9 8 34 34 H 1.09000 * 109.47467 * 60.00045 * 11 9 8 35 35 H 0.97003 * 120.00175 * 334.99870 * 12 9 8 36 36 H 1.08996 * 109.46863 * 299.99980 * 15 13 12 37 37 H 1.09004 * 109.46588 * 60.00418 * 15 13 12 38 38 H 1.09001 * 109.47554 * 300.00111 * 16 15 13 39 39 H 1.09003 * 109.47658 * 60.00257 * 16 15 13 40 40 H 0.96992 * 120.00563 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1952 2.6662 -0.0005 5 6 1.5096 4.0106 -0.0011 6 6 2.8329 4.4131 -0.0016 7 6 3.8456 3.4714 -0.0011 8 6 3.5386 2.1249 -0.0005 9 6 4.6430 1.0994 0.0006 10 1 4.3360 0.2356 0.5903 11 6 4.9320 0.6596 -1.4360 12 7 5.8523 1.6848 0.5848 13 6 6.7799 0.8886 1.1523 14 8 6.6133 -0.3125 1.1798 15 6 8.0241 1.4906 1.7527 16 6 8.9036 0.3778 2.3260 17 6 10.1476 0.9799 2.9270 18 1 10.2962 2.0493 2.9020 19 6 11.0965 0.1653 3.5076 20 7 12.1823 0.6907 4.0316 21 14 10.8398 -1.6845 3.5501 22 1 11.4243 -2.2935 2.3284 23 1 11.5052 -2.2491 4.7516 24 1 9.3858 -1.9814 3.6040 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 0.1617 2.3526 -0.0005 29 1 0.7212 4.7488 -0.0019 30 1 3.0758 5.4654 -0.0024 31 1 4.8777 3.7894 0.0032 32 1 5.7304 -0.0825 -1.4351 33 1 4.0322 0.2240 -1.8706 34 1 5.2389 1.5234 -2.0257 35 1 5.9854 2.6454 0.5631 36 1 8.5754 2.0293 0.9820 37 1 7.7459 2.1803 2.5497 38 1 8.3521 -0.1606 3.0968 39 1 9.1819 -0.3123 1.5294 40 1 12.8500 0.1177 4.4398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291884110.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:15 Heat of formation + Delta-G solvation = -22.495244 kcal Electronic energy + Delta-G solvation = -20581.460663 eV Core-core repulsion = 17486.937533 eV Total energy + Delta-G solvation = -3094.523130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.13225 -38.85015 -35.55870 -33.44132 -32.00915 -31.58252 -30.99772 -29.38717 -29.08310 -26.12720 -24.02417 -23.27032 -21.72553 -20.45787 -19.75428 -18.07622 -17.14366 -16.67244 -16.15186 -15.53072 -15.16539 -15.01665 -14.60159 -14.38425 -14.29841 -14.06625 -13.78482 -13.53909 -13.17941 -12.90619 -12.78291 -12.52904 -12.43316 -12.15377 -11.87042 -11.40992 -11.37949 -11.29954 -10.92728 -10.33323 -10.12517 -10.02985 -10.00475 -9.75174 -9.26011 -9.16915 -9.11048 -8.86089 -8.47762 -7.67860 -6.00274 -3.98843 0.89179 1.00582 1.21754 2.10670 3.16169 3.32527 3.40723 3.46655 3.48196 3.58837 4.34986 4.48157 4.53948 4.67423 4.67563 4.71134 5.02263 5.04826 5.18714 5.27174 5.28691 5.35393 5.40356 5.47512 5.62294 5.71744 5.84195 5.93432 6.08837 6.12864 6.14962 6.18686 6.21486 6.55728 6.69715 6.73432 7.40356 7.47538 7.77913 7.83247 8.53119 8.69423 9.02899 9.62969 11.12592 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.024189 B = 0.003293 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.249929 B = 8499.775308 C = 9227.379224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S -0.099 6.099 3 C -0.080 4.080 4 C -0.131 4.131 5 C -0.105 4.105 6 C -0.118 4.118 7 C -0.098 4.098 8 C -0.066 4.066 9 C 0.179 3.821 10 H 0.101 0.899 11 C -0.156 4.156 12 N -0.738 5.738 13 C 0.511 3.489 14 O -0.537 6.537 15 C -0.122 4.122 16 C 0.002 3.998 17 C -0.524 4.524 18 H 0.072 0.928 19 C 0.069 3.931 20 N -0.905 5.905 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.261 1.261 25 H 0.108 0.892 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.396 0.604 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.024 0.976 39 H 0.019 0.981 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.354 6.283 -11.523 29.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 S 0.144 5.856 3 C -0.193 4.193 4 C -0.154 4.154 5 C -0.125 4.125 6 C -0.139 4.139 7 C -0.118 4.118 8 C -0.072 4.072 9 C 0.074 3.926 10 H 0.119 0.881 11 C -0.215 4.215 12 N -0.393 5.393 13 C 0.300 3.700 14 O -0.412 6.412 15 C -0.162 4.162 16 C -0.036 4.036 17 C -0.562 4.562 18 H 0.090 0.910 19 C -0.133 4.133 20 N -0.543 5.543 21 Si 0.704 3.296 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.185 1.185 25 H 0.127 0.873 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.233 0.767 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.042 0.958 39 H 0.038 0.962 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.670 4.253 -11.395 28.406 hybrid contribution -0.870 0.780 0.067 1.171 sum -26.540 5.033 -11.328 29.292 Atomic orbital electron populations 1.23744 0.95784 1.07153 1.05481 1.85897 1.05360 1.02374 1.91919 1.21563 0.95675 0.97018 1.05090 1.21122 0.97982 0.93203 1.03136 1.21042 0.96712 0.95202 0.99497 1.21169 0.92638 0.99688 1.00375 1.20902 0.99699 0.91783 0.99450 1.19647 0.92268 0.94725 1.00607 1.19704 0.82826 0.94469 0.95618 0.88082 1.22138 1.02709 1.01883 0.94761 1.46376 1.20861 1.10617 1.61470 1.21552 0.84752 0.87225 0.76468 1.90656 1.77990 1.15221 1.57380 1.21672 0.92306 1.01538 1.00678 1.19368 0.94458 0.93486 0.96325 1.21119 1.02228 0.95578 1.37276 0.90955 1.24972 0.94837 0.98813 0.94640 1.69910 1.09575 1.35656 1.39204 0.86796 0.79371 0.85879 0.77530 1.20242 1.21469 1.18478 0.87346 0.89807 0.89815 0.85796 0.85706 0.85495 0.85367 0.91199 0.91298 0.92418 0.76737 0.89610 0.89613 0.95792 0.96237 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.15 101.05 0.92 -0.03 16 2 S -0.10 -1.02 20.47 -107.50 -2.20 -3.22 16 3 C -0.08 -0.87 6.11 -39.04 -0.24 -1.10 16 4 C -0.13 -1.15 9.36 -39.36 -0.37 -1.52 16 5 C -0.10 -0.83 10.04 -39.62 -0.40 -1.23 16 6 C -0.12 -0.98 10.04 -39.53 -0.40 -1.38 16 7 C -0.10 -0.96 9.24 -39.61 -0.37 -1.32 16 8 C -0.07 -0.76 5.08 -104.40 -0.53 -1.29 16 9 C 0.18 2.42 2.25 -69.08 -0.16 2.26 16 10 H 0.10 1.61 6.45 -51.93 -0.33 1.28 16 11 C -0.16 -1.96 9.47 37.16 0.35 -1.61 16 12 N -0.74 -10.46 5.00 -54.93 -0.27 -10.74 16 13 C 0.51 9.56 7.79 -10.98 -0.09 9.48 16 14 O -0.54 -12.13 15.64 5.55 0.09 -12.05 16 15 C -0.12 -2.40 5.64 -27.89 -0.16 -2.56 16 16 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 17 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 18 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 20 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 21 Si 0.88 22.87 27.47 -169.99 -4.67 18.20 16 22 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 25 H 0.11 0.54 8.14 -51.92 -0.42 0.12 16 26 H 0.08 0.47 7.75 -51.92 -0.40 0.06 16 27 H 0.08 0.43 7.75 -51.93 -0.40 0.03 16 28 H 0.12 0.83 5.88 -52.48 -0.31 0.52 16 29 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 30 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.13 1.05 6.07 -52.49 -0.32 0.73 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.79 7.73 -51.93 -0.40 0.39 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.40 4.45 6.21 -40.82 -0.25 4.19 16 36 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 37 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.02 0.63 7.16 -51.93 -0.37 0.26 16 39 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 341.57 15.07 5.15 5.15 Total: -1.00 -34.83 341.57 -8.81 -43.64 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.73 Total: 0.43 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -1.94 Total: -13.90 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.50 Total: -38.25 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.67 Total: 18.20 kcal Atomic # 16 Polarization: -1.02 SS G_CDS: -2.20 Total: -3.22 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.83 -8.81 -43.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291884110.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.141 kcal (2) G-P(sol) polarization free energy of solvation -34.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds