Wall clock time and date at job start Tue Mar 31 2020 08:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.76196 * 102.99900 * 2 1 4 4 C 1.38991 * 120.08238 * 359.97438 * 3 2 1 5 5 C 1.38068 * 119.91899 * 180.02562 * 4 3 2 6 6 C 1.38316 * 120.08105 * 0.02562 * 5 4 3 7 7 C 1.38288 * 120.16309 * 359.97438 * 6 5 4 8 8 C 1.38105 * 120.07563 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.03683 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.46989 * 145.00038 * 9 8 7 11 11 C 1.52999 * 109.46971 * 265.00285 * 9 8 7 12 12 N 1.46501 * 109.46939 * 25.00114 * 9 8 7 13 13 C 1.34780 * 119.99862 * 154.99832 * 12 9 8 14 14 O 1.21286 * 119.99954 * 359.97438 * 13 12 9 15 15 C 1.50701 * 120.00030 * 179.97438 * 13 12 9 16 16 C 1.52993 * 109.46977 * 179.97438 * 15 13 12 17 17 C 1.50705 * 109.47074 * 180.02562 * 16 15 13 18 18 H 1.07996 * 119.99833 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99978 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00238 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00015 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46978 * 90.00429 * 21 19 17 23 23 H 1.48501 * 109.46866 * 210.00087 * 21 19 17 24 24 H 1.48493 * 109.47232 * 330.00430 * 21 19 17 25 25 H 1.09001 * 109.46868 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46441 * 299.99974 * 1 2 3 27 27 H 1.08993 * 109.47015 * 60.00002 * 1 2 3 28 28 H 1.08003 * 120.03899 * 0.02562 * 4 3 2 29 29 H 1.08004 * 119.95580 * 179.97438 * 5 4 3 30 30 H 1.07996 * 119.92040 * 179.97438 * 6 5 4 31 31 H 1.08001 * 119.95968 * 180.28458 * 7 6 5 32 32 H 1.09006 * 109.46768 * 180.02562 * 11 9 8 33 33 H 1.09000 * 109.47146 * 299.99362 * 11 9 8 34 34 H 1.09000 * 109.47467 * 60.00045 * 11 9 8 35 35 H 0.97003 * 120.00175 * 334.99870 * 12 9 8 36 36 H 1.08996 * 109.46863 * 299.99980 * 15 13 12 37 37 H 1.09004 * 109.46588 * 60.00418 * 15 13 12 38 38 H 1.09001 * 109.47554 * 300.00111 * 16 15 13 39 39 H 1.09003 * 109.47658 * 60.00257 * 16 15 13 40 40 H 0.96992 * 120.00563 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1952 2.6662 -0.0005 5 6 1.5096 4.0106 -0.0011 6 6 2.8329 4.4131 -0.0016 7 6 3.8456 3.4714 -0.0011 8 6 3.5386 2.1249 -0.0005 9 6 4.6430 1.0994 0.0006 10 1 4.3360 0.2356 0.5903 11 6 4.9320 0.6596 -1.4360 12 7 5.8523 1.6848 0.5848 13 6 6.7799 0.8886 1.1523 14 8 6.6133 -0.3125 1.1798 15 6 8.0241 1.4906 1.7527 16 6 8.9036 0.3778 2.3260 17 6 10.1476 0.9799 2.9270 18 1 10.2962 2.0493 2.9020 19 6 11.0965 0.1653 3.5076 20 7 12.1823 0.6907 4.0316 21 14 10.8398 -1.6845 3.5501 22 1 11.4243 -2.2935 2.3284 23 1 11.5052 -2.2491 4.7516 24 1 9.3858 -1.9814 3.6040 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 0.1617 2.3526 -0.0005 29 1 0.7212 4.7488 -0.0019 30 1 3.0758 5.4654 -0.0024 31 1 4.8777 3.7894 0.0032 32 1 5.7304 -0.0825 -1.4351 33 1 4.0322 0.2240 -1.8706 34 1 5.2389 1.5234 -2.0257 35 1 5.9854 2.6454 0.5631 36 1 8.5754 2.0293 0.9820 37 1 7.7459 2.1803 2.5497 38 1 8.3521 -0.1606 3.0968 39 1 9.1819 -0.3123 1.5294 40 1 12.8500 0.1177 4.4398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291884110.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:15 Heat of formation + Delta-G solvation = -44.300776 kcal Electronic energy + Delta-G solvation = -20582.406221 eV Core-core repulsion = 17486.937533 eV Total energy + Delta-G solvation = -3095.468688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.21819 -39.96493 -36.71890 -35.52061 -33.54710 -32.61935 -32.21683 -30.26984 -29.66953 -28.00509 -25.06641 -24.02146 -23.23615 -21.69179 -21.17304 -19.36139 -18.68411 -17.63436 -17.61187 -16.55299 -16.44597 -16.25822 -15.98101 -15.41089 -15.14442 -15.00942 -14.88890 -14.68432 -14.56456 -14.35337 -13.97819 -13.51008 -13.41688 -13.33283 -13.16277 -12.91576 -12.72376 -12.23611 -12.13650 -12.03762 -11.96640 -11.76929 -11.39813 -11.03675 -10.79808 -10.77996 -10.70717 -10.22845 -9.81380 -8.43588 -8.31442 -6.34068 0.20170 0.31927 0.55578 1.33085 1.34969 1.48675 1.50561 1.67617 2.17369 2.35219 2.69204 3.04291 3.49542 3.82692 3.95812 4.08950 4.23214 4.23598 4.24771 4.26334 4.37465 4.43712 4.48933 4.50101 4.65812 4.74297 4.81931 4.86289 4.95866 5.00793 5.16247 5.23231 5.31851 5.36550 5.44738 5.50261 5.59466 5.61835 5.92434 6.23697 6.54382 6.72157 7.28453 7.31358 8.84229 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.024189 B = 0.003293 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.249929 B = 8499.775308 C = 9227.379224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.163 6.163 3 C -0.089 4.089 4 C -0.134 4.134 5 C -0.102 4.102 6 C -0.118 4.118 7 C -0.107 4.107 8 C -0.088 4.088 9 C 0.182 3.818 10 H 0.073 0.927 11 C -0.149 4.149 12 N -0.715 5.715 13 C 0.516 3.484 14 O -0.582 6.582 15 C -0.116 4.116 16 C 0.005 3.995 17 C -0.528 4.528 18 H 0.052 0.948 19 C 0.014 3.986 20 N -0.943 5.943 21 Si 0.937 3.063 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.263 1.263 25 H 0.120 0.880 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.145 0.855 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.140 0.860 32 H 0.045 0.955 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.413 0.587 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.008 0.992 39 H 0.009 0.991 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.753 7.661 -12.357 32.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.079 5.921 3 C -0.202 4.202 4 C -0.158 4.158 5 C -0.121 4.121 6 C -0.139 4.139 7 C -0.127 4.127 8 C -0.094 4.094 9 C 0.077 3.923 10 H 0.091 0.909 11 C -0.207 4.207 12 N -0.371 5.371 13 C 0.304 3.696 14 O -0.462 6.462 15 C -0.155 4.155 16 C -0.033 4.033 17 C -0.566 4.566 18 H 0.070 0.930 19 C -0.183 4.183 20 N -0.584 5.584 21 Si 0.762 3.238 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.188 1.188 25 H 0.138 0.862 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.162 0.838 29 H 0.172 0.828 30 H 0.171 0.829 31 H 0.158 0.842 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.252 0.748 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -28.093 5.684 -12.249 31.170 hybrid contribution -0.224 0.474 0.309 0.608 sum -28.317 6.157 -11.941 31.342 Atomic orbital electron populations 1.23795 0.91694 1.08342 1.06645 1.86107 1.09975 1.03791 1.92189 1.21633 0.95929 0.96875 1.05723 1.21441 0.98552 0.93356 1.02455 1.21461 0.97497 0.95394 0.97752 1.21519 0.92460 1.00716 0.99182 1.21108 1.00916 0.91242 0.99445 1.19512 0.91868 0.94876 1.03147 1.19641 0.82885 0.94461 0.95299 0.90925 1.22051 1.02223 1.01789 0.94648 1.46122 1.20115 1.11152 1.59680 1.21263 0.85081 0.86704 0.76547 1.90643 1.78959 1.17098 1.59468 1.21507 0.92328 0.99942 1.01770 1.19219 0.93763 0.94804 0.95495 1.21425 1.03463 0.94831 1.36867 0.93003 1.25783 0.94714 1.03277 0.94567 1.70015 1.10578 1.37378 1.40420 0.85850 0.79070 0.80749 0.78180 1.19326 1.20269 1.18767 0.86170 0.88839 0.88308 0.83764 0.82760 0.82908 0.84242 0.93631 0.90508 0.90876 0.74765 0.87636 0.87920 0.97320 0.97283 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.15 113.37 1.04 -0.41 16 2 S -0.16 -3.37 20.47 -56.49 -1.16 -4.52 16 3 C -0.09 -1.80 6.11 22.62 0.14 -1.67 16 4 C -0.13 -2.01 9.36 22.41 0.21 -1.80 16 5 C -0.10 -1.24 10.04 22.25 0.22 -1.02 16 6 C -0.12 -1.56 10.04 22.30 0.22 -1.33 16 7 C -0.11 -1.84 9.24 22.25 0.21 -1.64 16 8 C -0.09 -1.93 5.08 -19.72 -0.10 -2.03 16 9 C 0.18 4.92 2.25 44.25 0.10 5.02 16 10 H 0.07 2.42 6.45 -2.39 -0.02 2.41 16 11 C -0.15 -3.74 9.47 71.98 0.68 -3.06 16 12 N -0.72 -19.79 5.00 -446.08 -2.23 -22.02 16 13 C 0.52 19.23 7.79 87.66 0.68 19.91 16 14 O -0.58 -26.93 15.64 -3.05 -0.05 -26.98 16 15 C -0.12 -4.48 5.64 29.85 0.17 -4.31 16 16 C 0.01 0.26 3.33 29.85 0.10 0.36 16 17 C -0.53 -30.86 9.66 25.60 0.25 -30.61 16 18 H 0.05 3.17 7.99 -2.91 -0.02 3.14 16 19 C 0.01 0.86 5.47 84.65 0.46 1.32 16 20 N -0.94 -59.61 13.96 21.45 0.30 -59.31 16 21 Si 0.94 47.60 27.47 68.60 1.88 49.49 16 22 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.26 -13.40 6.54 99.48 0.65 -12.75 16 25 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.09 0.82 7.75 -2.39 -0.02 0.80 16 27 H 0.10 0.75 7.75 -2.39 -0.02 0.74 16 28 H 0.14 1.46 5.88 -2.91 -0.02 1.45 16 29 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 30 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 31 H 0.14 1.91 6.07 -2.91 -0.02 1.90 16 32 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.08 1.79 7.73 -2.39 -0.02 1.77 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.41 8.54 6.21 -92.71 -0.58 7.96 16 36 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 37 H 0.10 3.62 8.14 -2.38 -0.02 3.60 16 38 H 0.01 0.45 7.16 -2.39 -0.02 0.44 16 39 H 0.01 0.46 7.53 -2.39 -0.02 0.45 16 40 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -76.88 341.57 3.54 -73.34 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.41 Total: 11.26 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 4.38 Total: -21.25 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -1.93 Total: -81.33 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.05 Total: -26.98 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.88 Total: 49.49 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -1.16 Total: -4.52 kcal Total: -76.88 3.54 -73.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291884110.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.041 kcal (2) G-P(sol) polarization free energy of solvation -76.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds