Wall clock time and date at job start Tue Mar 31 2020 08:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76195 * 103.00516 * 2 1 4 4 C 1.38976 * 120.08229 * 179.97438 * 3 2 1 5 5 C 1.38084 * 119.91573 * 179.97438 * 4 3 2 6 6 C 1.38302 * 120.08239 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.91579 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47374 * 340.00083 * 7 6 5 9 9 C 1.53006 * 109.47239 * 100.00221 * 7 6 5 10 10 N 1.46500 * 109.46896 * 220.00003 * 7 6 5 11 11 C 1.34779 * 119.99741 * 155.00439 * 10 7 6 12 12 O 1.21279 * 120.00369 * 359.97438 * 11 10 7 13 13 C 1.50708 * 119.99762 * 179.97438 * 11 10 7 14 14 C 1.52992 * 109.46960 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.46945 * 180.02562 * 14 13 11 16 16 H 1.07996 * 120.00136 * 0.02562 * 15 14 13 17 17 C 1.37883 * 120.00193 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99943 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00376 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47045 * 59.99671 * 19 17 15 21 21 H 1.48496 * 109.47270 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46917 * 300.00015 * 19 17 15 23 23 C 1.38296 * 120.16027 * 0.27647 * 6 5 4 24 24 C 1.38083 * 120.08248 * 359.49009 * 23 6 5 25 25 H 1.09009 * 109.46836 * 59.99684 * 1 2 3 26 26 H 1.08995 * 109.47757 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47104 * 300.00426 * 1 2 3 28 28 H 1.08000 * 120.04124 * 359.95494 * 4 3 2 29 29 H 1.07998 * 119.95693 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47050 * 59.99664 * 9 7 6 31 31 H 1.09001 * 109.46801 * 179.97438 * 9 7 6 32 32 H 1.09001 * 109.46998 * 299.99373 * 9 7 6 33 33 H 0.96997 * 120.00110 * 334.99708 * 10 7 6 34 34 H 1.08994 * 109.47136 * 300.00021 * 13 11 10 35 35 H 1.09002 * 109.46457 * 59.99935 * 13 11 10 36 36 H 1.08994 * 109.47599 * 300.00210 * 14 13 11 37 37 H 1.09002 * 109.47005 * 60.00348 * 14 13 11 38 38 H 0.96994 * 120.00153 * 180.02562 * 18 17 15 39 39 H 1.08001 * 119.95592 * 179.72481 * 23 6 5 40 40 H 1.07997 * 120.03951 * 180.27245 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 3.5390 2.1249 0.0005 5 6 3.8458 3.4712 0.0000 6 6 2.8330 4.4130 -0.0016 7 6 3.1721 5.8813 -0.0028 8 1 4.1946 6.0184 0.3493 9 6 3.0438 6.4333 -1.4240 10 7 2.2504 6.5960 0.8837 11 6 2.6230 7.7646 1.4424 12 8 3.7213 8.2243 1.2117 13 6 1.6746 8.5002 2.3540 14 6 2.3383 9.7864 2.8497 15 6 1.3902 10.5216 3.7616 16 1 0.4123 10.1121 3.9674 17 6 1.7712 11.7171 4.3333 18 7 2.9622 12.2155 4.0832 19 14 0.5963 12.6281 5.4643 20 1 0.2592 11.7663 6.6257 21 1 1.2404 13.8766 5.9454 22 1 -0.6445 12.9651 4.7214 23 6 1.5099 4.0106 0.0031 24 6 1.1954 2.6660 -0.0012 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 4.3303 1.3899 0.0017 29 1 4.8779 3.7891 0.0000 30 1 2.0213 6.2962 -1.7761 31 1 3.2887 7.4955 -1.4247 32 1 3.7296 5.9016 -2.0836 33 1 1.3721 6.2283 1.0685 34 1 0.7643 8.7477 1.8079 35 1 1.4264 7.8679 3.2065 36 1 3.2483 9.5386 3.3958 37 1 2.5868 10.4188 1.9973 38 1 3.2305 13.0563 4.4856 39 1 0.7217 4.7489 0.0063 40 1 0.1619 2.3525 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291928243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:22 Heat of formation + Delta-G solvation = -30.502152 kcal Electronic energy + Delta-G solvation = -20146.054473 eV Core-core repulsion = 17051.184138 eV Total energy + Delta-G solvation = -3094.870335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.06883 -38.78753 -35.45558 -33.43657 -32.02573 -31.41326 -30.71893 -29.60446 -28.97233 -25.77720 -24.13508 -23.08829 -21.95321 -20.59230 -19.65605 -18.13459 -17.04794 -16.49928 -15.93463 -15.34599 -15.16585 -14.89132 -14.80988 -14.41125 -14.27546 -14.08121 -13.79140 -13.59684 -13.18886 -12.98083 -12.78761 -12.47603 -12.21933 -12.02466 -11.73960 -11.59218 -11.15515 -11.01362 -10.90322 -10.62878 -10.59160 -9.94419 -9.92066 -9.65785 -9.28997 -9.17547 -9.00564 -8.82961 -8.31044 -7.71926 -5.95270 -3.99716 0.85561 1.06858 1.14908 2.01750 3.24149 3.31752 3.34717 3.39411 3.41022 3.61283 4.45412 4.47986 4.49089 4.60256 4.61475 4.62445 5.04199 5.11567 5.20594 5.23191 5.31421 5.39479 5.45080 5.53603 5.66997 5.69655 5.90957 5.93287 6.00523 6.17858 6.22972 6.25654 6.31419 6.57378 6.76441 6.90166 7.74811 7.87389 7.87947 8.08145 8.39542 8.78420 9.08733 9.63635 11.15645 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.026194 B = 0.002585 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.676624 B =10828.318105 C =11493.146175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.124 6.124 3 C -0.088 4.088 4 C -0.096 4.096 5 C -0.089 4.089 6 C -0.086 4.086 7 C 0.181 3.819 8 H 0.095 0.905 9 C -0.157 4.157 10 N -0.739 5.739 11 C 0.512 3.488 12 O -0.533 6.533 13 C -0.130 4.130 14 C 0.038 3.962 15 C -0.528 4.528 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.094 4.094 24 C -0.129 4.129 25 H 0.084 0.916 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.395 0.605 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.261 0.739 39 H 0.127 0.873 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.596 -24.971 -11.305 27.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.118 5.882 3 C -0.200 4.200 4 C -0.119 4.119 5 C -0.110 4.110 6 C -0.089 4.089 7 C 0.076 3.924 8 H 0.113 0.887 9 C -0.215 4.215 10 N -0.394 5.394 11 C 0.300 3.700 12 O -0.408 6.408 13 C -0.170 4.170 14 C 0.000 4.000 15 C -0.566 4.566 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.114 4.114 24 C -0.152 4.152 25 H 0.103 0.897 26 H 0.126 0.874 27 H 0.104 0.896 28 H 0.147 0.853 29 H 0.150 0.850 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.230 0.770 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.145 0.855 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.026 -25.526 -11.422 28.128 hybrid contribution -1.943 1.398 0.707 2.496 sum -4.969 -24.127 -10.715 26.863 Atomic orbital electron populations 1.23674 0.94645 1.07124 1.05806 1.85484 1.06590 1.03387 1.92722 1.21714 0.96771 0.96299 1.05227 1.20729 0.94231 0.96008 1.00936 1.20985 0.99399 0.91912 0.98672 1.20080 0.93553 0.95244 1.00041 1.19713 0.95646 0.86092 0.90972 0.88658 1.22163 1.01952 1.02292 0.95119 1.46383 1.18860 1.24103 1.50074 1.21569 0.88776 0.79776 0.79865 1.90665 1.22678 1.66330 1.61129 1.21872 0.98010 0.99949 0.97187 1.18887 0.95702 0.89033 0.96374 1.21187 1.00972 1.06003 1.28448 0.92690 1.25026 0.95193 0.97448 0.96711 1.69985 1.18920 1.19924 1.44000 0.86653 0.81036 0.79142 0.81099 1.20264 1.21280 1.20261 1.20846 0.96071 0.95276 0.99164 1.21113 0.98176 0.92981 1.02976 0.89687 0.87406 0.89601 0.85337 0.85047 0.92502 0.91259 0.91839 0.77012 0.90273 0.90284 0.95822 0.95816 0.92893 0.85546 0.85769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.15 101.05 0.92 0.18 16 2 S -0.12 -1.02 22.56 -107.50 -2.43 -3.44 16 3 C -0.09 -0.84 6.11 -39.03 -0.24 -1.08 16 4 C -0.10 -0.92 9.79 -39.36 -0.39 -1.30 16 5 C -0.09 -0.89 9.66 -39.61 -0.38 -1.27 16 6 C -0.09 -0.92 4.96 -104.58 -0.52 -1.44 16 7 C 0.18 2.27 2.78 -69.08 -0.19 2.08 16 8 H 0.10 1.36 7.43 -51.93 -0.39 0.98 16 9 C -0.16 -1.84 9.46 37.16 0.35 -1.48 16 10 N -0.74 -10.34 5.03 -54.93 -0.28 -10.62 16 11 C 0.51 9.75 7.79 -10.98 -0.09 9.67 16 12 O -0.53 -12.39 15.64 5.56 0.09 -12.30 16 13 C -0.13 -2.64 5.64 -27.88 -0.16 -2.79 16 14 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 15 C -0.53 -15.02 9.11 -34.44 -0.31 -15.33 16 16 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.52 13.29 55.43 0.74 -26.79 16 19 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.09 -0.89 9.05 -39.62 -0.36 -1.25 16 24 C -0.13 -1.16 9.36 -39.36 -0.37 -1.52 16 25 H 0.08 0.39 7.75 -51.92 -0.40 -0.01 16 26 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.09 0.42 7.75 -51.93 -0.40 0.01 16 28 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.13 1.12 8.03 -52.49 -0.42 0.70 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.40 4.45 6.85 -40.82 -0.28 4.17 16 34 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.13 1.01 6.89 -52.49 -0.36 0.65 16 40 H 0.12 0.86 5.88 -52.49 -0.31 0.55 16 LS Contribution 349.71 15.07 5.27 5.27 Total: -1.00 -34.11 349.71 -9.47 -43.58 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.90 Total: 0.66 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.94 Total: -13.06 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.46 Total: -37.41 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.09 Total: -12.30 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.02 SS G_CDS: -2.43 Total: -3.44 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.11 -9.47 -43.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291928243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.077 kcal (2) G-P(sol) polarization free energy of solvation -34.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds