Wall clock time and date at job start Tue Mar 31 2020 08:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76195 * 103.00516 * 2 1 4 4 C 1.38976 * 120.08229 * 179.97438 * 3 2 1 5 5 C 1.38084 * 119.91573 * 179.97438 * 4 3 2 6 6 C 1.38302 * 120.08239 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.91579 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47374 * 340.00083 * 7 6 5 9 9 C 1.53006 * 109.47239 * 100.00221 * 7 6 5 10 10 N 1.46500 * 109.46896 * 220.00003 * 7 6 5 11 11 C 1.34779 * 119.99741 * 155.00439 * 10 7 6 12 12 O 1.21279 * 120.00369 * 359.97438 * 11 10 7 13 13 C 1.50708 * 119.99762 * 179.97438 * 11 10 7 14 14 C 1.52992 * 109.46960 * 179.97438 * 13 11 10 15 15 C 1.50699 * 109.46945 * 180.02562 * 14 13 11 16 16 H 1.07996 * 120.00136 * 0.02562 * 15 14 13 17 17 C 1.37883 * 120.00193 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99943 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00376 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47045 * 59.99671 * 19 17 15 21 21 H 1.48496 * 109.47270 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46917 * 300.00015 * 19 17 15 23 23 C 1.38296 * 120.16027 * 0.27647 * 6 5 4 24 24 C 1.38083 * 120.08248 * 359.49009 * 23 6 5 25 25 H 1.09009 * 109.46836 * 59.99684 * 1 2 3 26 26 H 1.08995 * 109.47757 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47104 * 300.00426 * 1 2 3 28 28 H 1.08000 * 120.04124 * 359.95494 * 4 3 2 29 29 H 1.07998 * 119.95693 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47050 * 59.99664 * 9 7 6 31 31 H 1.09001 * 109.46801 * 179.97438 * 9 7 6 32 32 H 1.09001 * 109.46998 * 299.99373 * 9 7 6 33 33 H 0.96997 * 120.00110 * 334.99708 * 10 7 6 34 34 H 1.08994 * 109.47136 * 300.00021 * 13 11 10 35 35 H 1.09002 * 109.46457 * 59.99935 * 13 11 10 36 36 H 1.08994 * 109.47599 * 300.00210 * 14 13 11 37 37 H 1.09002 * 109.47005 * 60.00348 * 14 13 11 38 38 H 0.96994 * 120.00153 * 180.02562 * 18 17 15 39 39 H 1.08001 * 119.95592 * 179.72481 * 23 6 5 40 40 H 1.07997 * 120.03951 * 180.27245 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 3.5390 2.1249 0.0005 5 6 3.8458 3.4712 0.0000 6 6 2.8330 4.4130 -0.0016 7 6 3.1721 5.8813 -0.0028 8 1 4.1946 6.0184 0.3493 9 6 3.0438 6.4333 -1.4240 10 7 2.2504 6.5960 0.8837 11 6 2.6230 7.7646 1.4424 12 8 3.7213 8.2243 1.2117 13 6 1.6746 8.5002 2.3540 14 6 2.3383 9.7864 2.8497 15 6 1.3902 10.5216 3.7616 16 1 0.4123 10.1121 3.9674 17 6 1.7712 11.7171 4.3333 18 7 2.9622 12.2155 4.0832 19 14 0.5963 12.6281 5.4643 20 1 0.2592 11.7663 6.6257 21 1 1.2404 13.8766 5.9454 22 1 -0.6445 12.9651 4.7214 23 6 1.5099 4.0106 0.0031 24 6 1.1954 2.6660 -0.0012 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 4.3303 1.3899 0.0017 29 1 4.8779 3.7891 0.0000 30 1 2.0213 6.2962 -1.7761 31 1 3.2887 7.4955 -1.4247 32 1 3.7296 5.9016 -2.0836 33 1 1.3721 6.2283 1.0685 34 1 0.7643 8.7477 1.8079 35 1 1.4264 7.8679 3.2065 36 1 3.2483 9.5386 3.3958 37 1 2.5868 10.4188 1.9973 38 1 3.2305 13.0563 4.4856 39 1 0.7217 4.7489 0.0063 40 1 0.1619 2.3525 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291928243.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:22 Heat of formation + Delta-G solvation = -51.275469 kcal Electronic energy + Delta-G solvation = -20146.955271 eV Core-core repulsion = 17051.184138 eV Total energy + Delta-G solvation = -3095.771134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.16195 -39.96926 -36.64696 -35.52861 -33.38968 -32.51864 -32.01253 -30.42505 -29.56622 -27.71118 -25.20134 -23.98769 -23.46257 -21.75684 -21.11063 -19.00389 -18.67851 -17.70792 -17.42595 -16.51179 -16.41768 -16.31184 -15.93647 -15.54427 -15.00516 -14.91921 -14.65445 -14.61003 -14.35836 -14.20523 -14.03145 -13.56070 -13.41414 -13.22798 -13.15948 -12.78143 -12.66501 -12.51089 -12.34871 -11.91660 -11.86925 -11.62799 -11.31437 -11.20374 -10.80919 -10.57766 -10.55096 -10.10994 -9.99013 -8.37394 -8.17142 -6.31267 0.10089 0.35821 0.57472 1.42346 1.46900 1.47726 1.54603 1.73037 2.21800 2.44822 2.67310 3.15636 3.55854 3.78785 3.94636 4.05017 4.23331 4.27576 4.27685 4.30044 4.38847 4.50290 4.52333 4.57391 4.68542 4.72886 4.85400 4.90517 5.00977 5.10343 5.16911 5.23999 5.27817 5.39933 5.50524 5.64454 5.65072 5.84828 5.86501 6.18526 6.60090 6.87181 7.35159 7.39091 8.95297 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.026194 B = 0.002585 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.676624 B =10828.318105 C =11493.146175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.150 6.150 3 C -0.093 4.093 4 C -0.106 4.106 5 C -0.096 4.096 6 C -0.097 4.097 7 C 0.183 3.817 8 H 0.073 0.927 9 C -0.151 4.151 10 N -0.714 5.714 11 C 0.514 3.486 12 O -0.585 6.585 13 C -0.120 4.120 14 C 0.043 3.957 15 C -0.544 4.544 16 H 0.076 0.924 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.974 3.026 20 H -0.263 1.263 21 H -0.288 1.288 22 H -0.262 1.262 23 C -0.094 4.094 24 C -0.130 4.130 25 H 0.094 0.906 26 H 0.124 0.876 27 H 0.092 0.908 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.413 0.587 34 H 0.106 0.894 35 H 0.103 0.897 36 H -0.019 1.019 37 H -0.017 1.017 38 H 0.263 0.737 39 H 0.144 0.856 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.734 -26.768 -11.166 30.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.092 5.908 3 C -0.206 4.206 4 C -0.129 4.129 5 C -0.117 4.117 6 C -0.100 4.100 7 C 0.078 3.922 8 H 0.091 0.909 9 C -0.210 4.210 10 N -0.369 5.369 11 C 0.302 3.698 12 O -0.465 6.465 13 C -0.160 4.160 14 C 0.005 3.995 15 C -0.582 4.582 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.797 3.203 20 H -0.187 1.187 21 H -0.214 1.214 22 H -0.186 1.186 23 C -0.114 4.114 24 C -0.154 4.154 25 H 0.113 0.887 26 H 0.142 0.858 27 H 0.111 0.889 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.251 0.749 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.000 1.000 37 H 0.001 0.999 38 H 0.071 0.929 39 H 0.161 0.839 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.215 -27.394 -11.301 30.278 hybrid contribution -0.963 1.825 0.615 2.153 sum -7.178 -25.569 -10.686 28.627 Atomic orbital electron populations 1.23787 0.91624 1.08517 1.06620 1.85602 1.09983 1.02687 1.92492 1.21944 0.96950 0.97178 1.04526 1.20897 0.94903 0.95987 1.01101 1.21108 0.99750 0.92169 0.98631 1.19875 0.94509 0.93611 1.02045 1.19718 0.94124 0.87504 0.90849 0.90930 1.22106 1.03436 1.00525 0.94887 1.46087 1.19749 1.22252 1.48784 1.21313 0.87719 0.80893 0.79843 1.90654 1.24709 1.68025 1.63085 1.21644 0.98350 0.97310 0.98646 1.18676 0.94655 0.91747 0.94430 1.21693 1.01839 1.06331 1.28299 0.90592 1.26148 0.97047 0.98702 0.98604 1.70171 1.21475 1.20542 1.45587 0.85376 0.78580 0.77417 0.78887 1.18730 1.21384 1.18621 1.21036 0.95772 0.96076 0.98542 1.21378 0.99200 0.92544 1.02251 0.88687 0.85773 0.88888 0.84488 0.84522 0.90793 0.94098 0.90171 0.74919 0.87621 0.87927 1.00033 0.99882 0.92869 0.83851 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.15 113.37 1.04 0.04 16 2 S -0.15 -2.19 22.56 -56.49 -1.27 -3.46 16 3 C -0.09 -1.61 6.11 22.62 0.14 -1.47 16 4 C -0.11 -1.91 9.79 22.41 0.22 -1.69 16 5 C -0.10 -1.85 9.66 22.25 0.21 -1.63 16 6 C -0.10 -1.94 4.96 -19.84 -0.10 -2.04 16 7 C 0.18 4.51 2.78 44.25 0.12 4.64 16 8 H 0.07 2.16 7.43 -2.39 -0.02 2.14 16 9 C -0.15 -3.45 9.46 71.98 0.68 -2.77 16 10 N -0.71 -19.22 5.03 -446.08 -2.24 -21.47 16 11 C 0.51 19.78 7.79 87.66 0.68 20.47 16 12 O -0.59 -28.62 15.64 -3.03 -0.05 -28.67 16 13 C -0.12 -4.79 5.64 29.85 0.17 -4.62 16 14 C 0.04 2.38 4.26 29.85 0.13 2.51 16 15 C -0.54 -31.03 9.11 25.60 0.23 -30.79 16 16 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 17 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 18 N -0.94 -59.85 13.29 21.45 0.28 -59.56 16 19 Si 0.97 44.35 29.54 68.60 2.03 46.37 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 23 C -0.09 -1.54 9.05 22.25 0.20 -1.34 16 24 C -0.13 -1.97 9.36 22.41 0.21 -1.76 16 25 H 0.09 0.54 7.75 -2.39 -0.02 0.52 16 26 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.09 0.58 7.75 -2.39 -0.02 0.57 16 28 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.14 2.34 8.03 -2.91 -0.02 2.32 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.41 8.20 6.85 -92.71 -0.63 7.56 16 34 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 35 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 36 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 37 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 38 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 39 H 0.14 1.78 6.89 -2.91 -0.02 1.76 16 40 H 0.15 1.49 5.88 -2.91 -0.02 1.47 16 Total: -1.00 -77.40 349.71 3.55 -73.85 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.40 Total: 13.37 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 4.40 Total: -20.45 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -1.96 Total: -81.03 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.05 Total: -28.67 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -2.19 SS G_CDS: -1.27 Total: -3.46 kcal Total: -77.40 3.55 -73.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291928243.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.579 kcal (2) G-P(sol) polarization free energy of solvation -77.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds